This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26899 (15 seq.)
>WENV011133
AACY020303288
Marine microbial communities from Global Ocean Sampling (GOS)
2616
2705
+
Ser
CGA
[ENA]
>WENV011258
AACY020306869
Marine microbial communities from Global Ocean Sampling (GOS)
3902
3811
-
Ser
CGA
[ENA]
>WENV180209946
OBAL01047099
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
327
416
+
Ser
CGA
[ENA]
¡û
>WENV180359900
OBNS01062606
[OBNS] marine metagenome; Seawater
163
252
+
Ser
CGA
[ENA]
¡û
>WENV180362134
OBNW01042881
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
380
291
-
Ser
CGA
[ENA]
¡û
>WENV180365350
OBOB01088245
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
245
334
+
Ser
CGA
[ENA]
¡û
>WENV018962
AACY020523260
Marine microbial communities from Global Ocean Sampling (GOS)
1142
1233
+
Ser
CGA
[ENA]
>WENV019816
AACY020539898
Marine microbial communities from Global Ocean Sampling (GOS)
4165
4256
+
Ser
CGA
[ENA]
>ENV08000736
ABMI01033687
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
2
91
+
Ser
CGA
[ENA]
¡û
>SRA1000686
SRR001046.77293
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
2
91
+
Ser
CGA
[SRA]
>WENV030420
AACY021281206
Marine microbial communities from Global Ocean Sampling (GOS)
61
152
+
Ser
CGA
[ENA]
>WENV070410
AACY023807980
Marine microbial communities from Global Ocean Sampling (GOS)
773
864
+
Ser
CGA
[ENA]
>WENV070530
AACY023812592
Marine microbial communities from Global Ocean Sampling (GOS)
730
821
+
Ser
CGA
[ENA]
>WENV070709
AACY023819865
Marine microbial communities from Global Ocean Sampling (GOS)
386
295
-
Ser
CGA
[ENA]
>WENV071121
AACY023835958
Marine microbial communities from Global Ocean Sampling (GOS)
189
98
-
Ser
CGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK