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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269101 (31 seq.)
>W1711793350
MWLO01000115
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
40684
40759
+
Glu
TTC
[ENA]
¡û
>WENV180019453
FTBV01002646
[FTBV] metagenome; soil
116337
116262
-
Glu
TTC
[ENA]
¡û
>WENV180041268
LLBZ010079328
[LLBZ] soil metagenome; soil from tomato rhizosphere
1133
1208
+
Glu
TTC
[ENA]
¡û
>W1911774999
QXMG01000011
Betaproteobacteria
Aquabacterium sp. YIM 730274 [QXMG]
49948
50023
+
Glu
TTC
[ENA]
¡û
>W1911775001
QXMG01000011
Betaproteobacteria
Aquabacterium sp. YIM 730274 [QXMG]
50209
50284
+
Glu
TTC
[ENA]
¡û
>W1810273260
PSNX01000002
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
173503
173428
-
Glu
TTC
[ENA]
¡û
>W2010613202
JABSNM010000004
Betaproteobacteria
Leptothrix sp. C29 [JABSNM]
137983
137908
-
Glu
TTC
[ENA]
¡û
>W2010613204
JABSNM010000004
Betaproteobacteria
Leptothrix sp. C29 [JABSNM]
137753
137678
-
Glu
TTC
[ENA]
¡û
>W2010613207
JABSNM010000004
Betaproteobacteria
Leptothrix sp. C29 [JABSNM]
137408
137333
-
Glu
TTC
[ENA]
¡û
>W2010677933
JACCPY010000003
Betaproteobacteria
Sphaerotilus natans subsp. sulfidivorans D-501 [JACCPY]
78186
78111
-
Glu
TTC
[ENA]
¡û
>W2010677935
JACCPY010000003
Betaproteobacteria
Sphaerotilus natans subsp. sulfidivorans D-501 [JACCPY]
77955
77880
-
Glu
TTC
[ENA]
¡û
>W2010677938
JACCPY010000003
Betaproteobacteria
Sphaerotilus natans subsp. sulfidivorans D-501 [JACCPY]
77608
77533
-
Glu
TTC
[ENA]
¡û
>W2011328556
QXMG01000011
Betaproteobacteria
Aquabacterium sp. YIM 730274 [QXMG]
49948
50023
+
Glu
TTC
[ENA]
¡û
>W2011328558
QXMG01000011
Betaproteobacteria
Aquabacterium sp. YIM 730274 [QXMG]
50209
50284
+
Glu
TTC
[ENA]
¡û
>W2011577831
SGWV01000007
Betaproteobacteria
Leptothrix mobilis DSM 10617 [SGWV]
586336
586261
-
Glu
TTC
[ENA]
¡û
>W2011577833
SGWV01000007
Betaproteobacteria
Leptothrix mobilis DSM 10617 [SGWV]
586026
585951
-
Glu
TTC
[ENA]
¡û
>W2011701381
SWAR01000008
Betaproteobacteria
Rivibacter sp. C1-9 [SWAR]
106023
106098
+
Glu
TTC
[ENA]
¡û
>W2110070495
BPKQ01000006
Betaproteobacteria
Sphaerotilus natans JCM 20382 [BPKQ]
62535
62460
-
Glu
TTC
[ENA]
¡û
>W2110070497
BPKQ01000006
Betaproteobacteria
Sphaerotilus natans JCM 20382 [BPKQ]
62304
62229
-
Glu
TTC
[ENA]
¡û
>W2110070500
BPKQ01000006
Betaproteobacteria
Sphaerotilus natans JCM 20382 [BPKQ]
61957
61882
-
Glu
TTC
[ENA]
¡û
>C201062560
CP035708
Betaproteobacteria
Sphaerotilus natans subsp. sulfidivorans D-507 [CP035708]
1285766
1285841
+
Glu
TTC
-
¡û
>C201062562
CP035708
Betaproteobacteria
Sphaerotilus natans subsp. sulfidivorans D-507 [CP035708]
1285997
1286072
+
Glu
TTC
-
¡û
>C201062565
CP035708
Betaproteobacteria
Sphaerotilus natans subsp. sulfidivorans D-507 [CP035708]
1286344
1286419
+
Glu
TTC
-
¡û
>C231019549
AP025730
Betaproteobacteria
Sphaerotilus sp. FB-5 [AP025730]
2546004
2546079
+
Glu
TTC
-
¡û
>C231019552
AP025730
Betaproteobacteria
Sphaerotilus sp. FB-5 [AP025730]
2546434
2546509
+
Glu
TTC
-
¡û
>W2310018010
BQWE01000057
Betaproteobacteria
Sphaerotilus sp. FB-3 [BQWE]
97568
97493
-
Glu
TTC
[ENA]
¡û
>W2310018012
BQWE01000057
Betaproteobacteria
Sphaerotilus sp. FB-3 [BQWE]
97337
97262
-
Glu
TTC
[ENA]
¡û
>W2310018015
BQWE01000057
Betaproteobacteria
Sphaerotilus sp. FB-3 [BQWE]
96990
96915
-
Glu
TTC
[ENA]
¡û
>W121036351
AHLZ01000002
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
3755188
3755113
-
Glu
TTC
[ENA]
¡û
>W1710597128
FTMZ01000007
Betaproteobacteria
Sphaerotilus natans [FTMZ]
70472
70397
-
Glu
TTC
[ENA]
¡û
>W1710597131
FTMZ01000007
Betaproteobacteria
Sphaerotilus natans [FTMZ]
70125
70050
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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