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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269424 (89 seq.)
>W131052953
AMZQ01000004
Campylobacterota
Campylobacter showae CSUNSWCD [AMZQ]
89
14
-
Glu
CTC
[ENA]
¡û
>WENV180004329
FLRR01104144
[FLRR] metagenome; saliva
113
38
-
Glu
CTC
[ENA]
¡û
>WENV180007448
FLSA01027370
[FLSA] metagenome; saliva
219
144
-
Glu
CTC
[ENA]
¡û
>WENV180008533
FLSB01052148
[FLSB] metagenome; saliva
121
46
-
Glu
CTC
[ENA]
¡û
>WENV180721290
ODGK01059938
[ODGK] human metagenome; G_DNA_Palatine Tonsils
10
85
+
Glu
CTC
[ENA]
¡û
>WENV180721799
ODGL01014505
[ODGL] human metagenome; G_DNA_Subgingival plaque
763
688
-
Glu
CTC
[ENA]
¡û
>WENV180729277
ODGU01312334
[ODGU] human metagenome; G_DNA_Supragingival plaque
64
139
+
Glu
CTC
[ENA]
¡û
>WENV180731929
ODGW01038295
[ODGW] human metagenome; G_DNA_Supragingival plaque
213
288
+
Glu
CTC
[ENA]
¡û
>WENV180734836
ODGZ01028052
[ODGZ] human metagenome; G_DNA_Supragingival plaque
544
469
-
Glu
CTC
[ENA]
¡û
>WENV180739312
ODHD01030451
[ODHD] human metagenome; G_DNA_Supragingival plaque
370
445
+
Glu
CTC
[ENA]
¡û
>WENV180751643
ODHS01093737
[ODHS] human metagenome; G_DNA_Supragingival plaque
404
329
-
Glu
CTC
[ENA]
¡û
>WENV180765353
ODIB01106636
[ODIB] human metagenome; G_DNA_Supragingival plaque
126
51
-
Glu
CTC
[ENA]
¡û
>WENV180768990
ODIG01026182
[ODIG] human metagenome; G_DNA_Tongue dorsum
409
334
-
Glu
CTC
[ENA]
¡û
>WENV180780209
ODIN01069981
[ODIN] human metagenome; G_DNA_Throat
257
331
+
Glu
CTC
[ENA]
¡û
>WENV180788052
ODIS01027837
[ODIS] human metagenome; G_DNA_Supragingival plaque
141
216
+
Glu
CTC
[ENA]
¡û
>WENV180797608
ODJB01087190
[ODJB] human metagenome; G_DNA_Supragingival plaque
65
140
+
Glu
CTC
[ENA]
¡û
>WENV180801741
ODJD01137723
[ODJD] human metagenome; G_DNA_Supragingival plaque
125
50
-
Glu
CTC
[ENA]
¡û
>WENV180804348
ODJG01001946
[ODJG] human metagenome; G_DNA_Supragingival plaque
1793
1868
+
Glu
CTC
[ENA]
¡û
>WENV180808167
ODJI01104791
[ODJI] human metagenome; G_DNA_Tongue dorsum
98
23
-
Glu
CTC
[ENA]
¡û
>WENV180809175
ODJK01006373
[ODJK] human metagenome; G_DNA_Subgingival plaque
3502
3577
+
Glu
CTC
[ENA]
¡û
>WENV180814453
ODJO01017520
[ODJO] human metagenome; G_DNA_Supragingival plaque
307
232
-
Glu
CTC
[ENA]
¡û
>WENV180816732
ODJP01048495
[ODJP] human metagenome; G_DNA_Tongue dorsum
391
466
+
Glu
CTC
[ENA]
¡û
>WENV180831380
ODKB01130605
[ODKB] human metagenome; G_DNA_Tongue dorsum
122
47
-
Glu
CTC
[ENA]
¡û
>WENV180832928
ODKC01008168
[ODKC] human metagenome; G_DNA_Supragingival plaque
2395
2320
-
Glu
CTC
[ENA]
¡û
>WENV180834560
ODKD01053197
[ODKD] human metagenome; G_DNA_Supragingival plaque
371
296
-
Glu
CTC
[ENA]
¡û
>WENV180844632
ODKN01266163
[ODKN] human metagenome; G_DNA_Supragingival plaque
146
71
-
Glu
CTC
[ENA]
¡û
>WENV180848006
ODKT01350031
[ODKT] human metagenome; G_DNA_Supragingival plaque
144
69
-
Glu
CTC
[ENA]
¡û
>WENV180922055
ODTJ01001138
[ODTJ] human metagenome; G_DNA_Supragingival plaque
4558
4483
-
Glu
CTC
[ENA]
¡û
>WENV180923575
ODTK01000029
[ODTK] human metagenome; G_DNA_Supragingival plaque
64161
64086
-
Glu
CTC
[ENA]
¡û
>WENV180931635
ODTP01007037
[ODTP] human metagenome; G_DNA_Tongue dorsum
261
186
-
Glu
CTC
[ENA]
¡û
>WENV180934190
ODTR01045409
[ODTR] human metagenome; G_DNA_Supragingival plaque
204
279
+
Glu
CTC
[ENA]
¡û
>WENV180935194
ODTS01101545
[ODTS] human metagenome; G_DNA_Subgingival plaque
53
128
+
Glu
CTC
[ENA]
¡û
>WENV180937603
ODTX01000005
[ODTX] human metagenome; G_DNA_Supragingival plaque
77682
77757
+
Glu
CTC
[ENA]
¡û
>WENV180944409
ODUC01016742
[ODUC] human metagenome; G_DNA_Supragingival plaque
1846
1921
+
Glu
CTC
[ENA]
¡û
>WENV180949805
ODUG01039692
[ODUG] human metagenome; G_DNA_Tongue dorsum
259
184
-
Glu
CTC
[ENA]
¡û
>WENV180951846
ODUH01064330
[ODUH] human metagenome; G_DNA_Subgingival plaque
232
157
-
Glu
CTC
[ENA]
¡û
>WENV180973533
ODUW01007869
[ODUW] human metagenome; G_DNA_Supragingival plaque
2562
2637
+
Glu
CTC
[ENA]
¡û
>WENV180980817
ODVE01002190
[ODVE] human metagenome; G_DNA_Supragingival plaque
7100
7175
+
Glu
CTC
[ENA]
¡û
>WENV180983584
ODVF01020850
[ODVF] human metagenome; G_DNA_Supragingival plaque
1708
1783
+
Glu
CTC
[ENA]
¡û
>WENV180987833
ODVK01181224
[ODVK] human metagenome; G_DNA_Supragingival plaque
146
71
-
Glu
CTC
[ENA]
¡û
>WENV181004122
ODVX01104950
[ODVX] human metagenome; G_DNA_Supragingival plaque
307
232
-
Glu
CTC
[ENA]
¡û
>WENV181006697
ODWA01101241
[ODWA] human metagenome; G_DNA_Buccal mucosa
214
286
+
Glu
CTC
[ENA]
¡û
>WENV181009127
ODWE01031782
[ODWE] human metagenome; G_DNA_Supragingival plaque
1076
1151
+
Glu
CTC
[ENA]
¡û
>WENV181009828
ODWE01257581
[ODWE] human metagenome; G_DNA_Supragingival plaque
92
167
+
Glu
CTC
[ENA]
¡û
>WENV181019678
ODWU01009511
[ODWU] human metagenome; G_DNA_Supragingival plaque
2667
2742
+
Glu
CTC
[ENA]
¡û
>WENV181038000
ODXQ01000190
[ODXQ] human metagenome; G_DNA_Tongue dorsum
330
255
-
Glu
CTC
[ENA]
¡û
>WENV181043146
ODXU01053423
[ODXU] human metagenome; G_DNA_Buccal mucosa
144
219
+
Glu
CTC
[ENA]
¡û
>WENV181059095
ODYL01124792
[ODYL] human metagenome; G_DNA_Tongue dorsum
105
180
+
Glu
CTC
[ENA]
¡û
>WENV181060342
ODYM01130949
[ODYM] human metagenome; G_DNA_Tongue dorsum
152
227
+
Glu
CTC
[ENA]
¡û
>WENV181065093
ODYP01298176
[ODYP] human metagenome; G_DNA_Supragingival plaque
146
71
-
Glu
CTC
[ENA]
¡û
>WENV181067199
ODZI01009048
[ODZI] human metagenome; G_DNA_Supragingival plaque
2240
2165
-
Glu
CTC
[ENA]
¡û
>WENV181077203
OEAP01032212
[OEAP] human metagenome; G_DNA_Supragingival plaque
878
953
+
Glu
CTC
[ENA]
¡û
>WENV181081590
OEAS01272124
[OEAS] human metagenome; G_DNA_Supragingival plaque
90
165
+
Glu
CTC
[ENA]
¡û
>WENV181083849
OEAV01028203
[OEAV] human metagenome; G_DNA_Supragingival plaque
405
330
-
Glu
CTC
[ENA]
¡û
>WENV181091983
OEBC01168043
[OEBC] human metagenome; G_DNA_Supragingival plaque
244
169
-
Glu
CTC
[ENA]
¡û
>WENV181108241
OEEI01163635
[OEEI] human metagenome; G_DNA_Supragingival plaque
144
69
-
Glu
CTC
[ENA]
¡û
>WENV181115455
OEEO01083458
[OEEO] human metagenome; G_DNA_Supragingival plaque
257
332
+
Glu
CTC
[ENA]
¡û
>WENV181122049
OEFL01055660
[OEFL] human metagenome; G_DNA_Supragingival plaque
274
349
+
Glu
CTC
[ENA]
¡û
>WENV181138204
OEGJ01172699
[OEGJ] human metagenome; G_DNA_Supragingival plaque
147
72
-
Glu
CTC
[ENA]
¡û
>WENV181142088
OEGT01075934
[OEGT] human metagenome; G_DNA_Throat
130
55
-
Glu
CTC
[ENA]
¡û
>WENV181153098
OEIA01020959
[OEIA] human metagenome; G_DNA_Supragingival plaque
65
140
+
Glu
CTC
[ENA]
¡û
>WENV181159265
OEIH01128916
[OEIH] human metagenome; G_DNA_Supragingival plaque
56
131
+
Glu
CTC
[ENA]
¡û
>WENV181179384
OEJT01004167
[OEJT] human metagenome; G_DNA_Supragingival plaque
405
330
-
Glu
CTC
[ENA]
¡û
>WENV181181506
OEJU01101253
[OEJU] human metagenome; G_DNA_Supragingival plaque
147
72
-
Glu
CTC
[ENA]
¡û
>WENV181183140
OEJV01222492
[OEJV] human metagenome; G_DNA_Supragingival plaque
146
71
-
Glu
CTC
[ENA]
¡û
>C191220093
LR535679
Campylobacterota
Campylobacter showae [LR535679]
393873
393948
+
Glu
CTC
-
¡û
>W09122010
ACFU01000007
Campylobacterota
Campylobacter rectus RM3267 [ACFU]
48842
48917
+
Glu
CTC
[ENA]
¡û
>W2010752218
JACLZK010000002
Campylobacterota
Campylobacter sp. Marseille-Q3452 [JACLZK]
88596
88521
-
Glu
CTC
[ENA]
¡û
>W2010774800
LIWP01000007
Campylobacterota
Campylobacter sp. RM15925 [LIWP]
7634
7559
-
Glu
CTC
[ENA]
¡û
>W2010774841
LIWQ01000009
Campylobacterota
Campylobacter sp. RM16188 [LIWQ]
118701
118776
+
Glu
CTC
[ENA]
¡û
>W2010774869
LIWR01000002
Campylobacterota
Campylobacter sp. RM16189 [LIWR]
1862
1787
-
Glu
CTC
[ENA]
¡û
>W2010774941
LIWS01000034
Campylobacterota
Campylobacter sp. RM16190 [LIWS]
280
205
-
Glu
CTC
[ENA]
¡û
>W2010774976
LIWT01000050
Campylobacterota
Campylobacter sp. RM16191 [LIWT]
191
266
+
Glu
CTC
[ENA]
¡û
>W2011483848
RQYP01000086
Campylobacterota
Campylobacter rectus OH2158 [RQYP]
256
181
-
Glu
CTC
[ENA]
¡û
>W2011950581
UWOI01000001
Campylobacterota
Campylobacter showae [UWOI]
416201
416126
-
Glu
CTC
[ENA]
¡û
>W2011950627
UWOJ01000001
Campylobacterota
Campylobacter showae [UWOJ]
966655
966580
-
Glu
CTC
[ENA]
¡û
>W2011950656
UWOK01000001
Campylobacterota
Campylobacter showae [UWOK]
1826346
1826421
+
Glu
CTC
[ENA]
¡û
>W2011950699
UWOL01000001
Campylobacterota
Campylobacter showae [UWOL]
1326971
1327046
+
Glu
CTC
[ENA]
¡û
>W2011950755
UWOM01000001
Campylobacterota
Campylobacter showae [UWOM]
758525
758450
-
Glu
CTC
[ENA]
¡û
>W2011950784
UWON01000001
Campylobacterota
Campylobacter showae [UWON]
963305
963380
+
Glu
CTC
[ENA]
¡û
>W2011950855
UWOO01000002
Campylobacterota
Campylobacter showae [UWOO]
372130
372055
-
Glu
CTC
[ENA]
¡û
>C231028652
CP012549
Campylobacterota
Campylobacter sp. RM16187 [CP012549]
1343810
1343885
+
Glu
CTC
-
¡û
>C231219147
CP085962
Campylobacterota
Campylobacter rectus FDAARGOS_1549 [CP085962]
114275
114350
+
Glu
CTC
-
¡û
>C231219151
CP085962
Campylobacterota
Campylobacter rectus FDAARGOS_1549 [CP085962]
114619
114694
+
Glu
CTC
-
¡û
>C241016647
CP012543
Campylobacterota
Campylobacter rectus ATCC 33238 [CP012543]
1622746
1622821
+
Glu
CTC
-
¡û
>C241016651
CP012543
Campylobacterota
Campylobacter rectus ATCC 33238 [CP012543]
1623090
1623165
+
Glu
CTC
-
¡û
>C241016712
CP012544
Campylobacterota
Campylobacter showae ATCC 51146 [CP012544]
715764
715689
-
Glu
CTC
-
¡û
>C241016808
CP012552
Campylobacterota
Campylobacter sp. RM16192 [CP012552]
593869
593794
-
Glu
CTC
-
¡û
>C241161943
CP053845
Campylobacterota
Campylobacter sp. CCUG 57310 [CP053845]
647291
647216
-
Glu
CTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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