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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269634 (14 seq.)
>WENV182866126
OKRQ01023777
[OKRQ] freshwater metagenome; freshwater
354
427
+
Gly
GCC
[ENA]
¡û
>WENV183717810
PDWJ01001683
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
21054
20981
-
Gly
GCC
[ENA]
¡û
>WENV183717811
PDWJ01001683
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
581
508
-
Gly
GCC
[ENA]
¡û
>WENV170168382
CEOP01084611
[CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
161
236
+
Gly
GCC
[ENA]
¡û
>WENV170425376
CEUP01090122
[CEUP] marine metagenome genome assembly TARA_123_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
378
303
-
Gly
GCC
[ENA]
¡û
>W2110079982
CAIJOQ010000006
Unclassified
candidate division WOR-3 bacterium [CAIJOQ]
62770
62698
-
Gly
GCC
[ENA]
¡û
>W2110084593
CAIPLT010000027
Unclassified
candidate division WOR-3 bacterium [CAIPLT]
25919
25847
-
Gly
GCC
[ENA]
¡û
>W2110086419
CAISFH010000002
Unclassified
candidate division WOR-3 bacterium [CAISFH]
62770
62698
-
Gly
GCC
[ENA]
¡û
>W2110086763
CAISUA010000235
Unclassified
candidate division WOR-3 bacterium [CAISUA]
19921
19849
-
Gly
GCC
[ENA]
¡û
>W2110087047
CAITFA010000183
Unclassified
candidate division WOR-3 bacterium [CAITFA]
19909
19981
+
Gly
GCC
[ENA]
¡û
>W2110087794
CAIUCQ010000014
Unclassified
candidate division WOR-3 bacterium [CAIUCQ]
26063
25991
-
Gly
GCC
[ENA]
¡û
>W2110089284
CAIWXC010000070
Unclassified
candidate division WOR-3 bacterium [CAIWXC]
38740
38812
+
Gly
GCC
[ENA]
¡û
>C211238654
CP067393
Gammaproteobacteria
Entomomonas sp. F2A [CP067393]
2190674
2190749
+
Gly
GCC
-
¡û
>C231541382
CP111043
Bacteroidota
Flammeovirgaceae bacterium WSW3-B12 [CP111043]
3826554
3826481
-
Gly
GCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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