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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269720 (6 seq.)
>WENV181167584
OEIU01045722
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
735
810
+
Ala
GGC
[ENA]
¡û
>WENV170566593
FKKE01055801
[FKKE] freshwater metagenome; freshwater
97
22
-
Ala
GGC
[ENA]
¡û
>WENV170574500
FLYM01048544
[FLYM] hot springs metagenome; Sediment
4050
4125
+
Ala
GGC
[ENA]
¡û
>WENV170576200
FRDC01000077
[FRDC] freshwater metagenome; water
177166
177241
+
Ala
GGC
[ENA]
¡û
>WENV170714754
LNFM01098100
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
239
314
+
Ala
GGC
[ENA]
¡û
>W2110087282
CAITMY010000114
Bdellovibrionota
Oligoflexia bacterium [CAITMY]
601
526
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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