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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270080 (130 seq.)
>W131227376
AUFC01000005
Bacillota
Anaerovorax odorimutans DSM 5092 [AUFC]
73795
73720
-
His
GTG
[ENA]
¡û
>WENV180005623
FLRW01148488
[FLRW] metagenome; saliva
120
45
-
His
GTG
[ENA]
¡û
>WENV180402573
OBRP01013687
[OBRP] human gut metagenome; ENVO:feces
194
269
+
His
GTG
[ENA]
¡û
>WENV180403658
OBRT01004801
[OBRT] human gut metagenome; ENVO:feces
1433
1358
-
His
GTG
[ENA]
¡û
>WENV180543545
OCHT01182197
[OCHT] human gut metagenome; human gut
58
133
+
His
GTG
[ENA]
¡û
>WENV180596415
OCPH01046702
[OCPH] human gut metagenome; ENVO:feces
73
148
+
His
GTG
[ENA]
¡û
>WENV180597335
OCPK01058755
[OCPK] human gut metagenome; ENVO:feces
149
74
-
His
GTG
[ENA]
¡û
>WENV180597543
OCPL01005593
[OCPL] human gut metagenome; ENVO:feces
1197
1122
-
His
GTG
[ENA]
¡û
>WENV180649622
OCSK01092690
[OCSK] human gut metagenome; human gut
128
203
+
His
GTG
[ENA]
¡û
>WENV180651237
OCSZ01090887
[OCSZ] human gut metagenome; human gut
185
110
-
His
GTG
[ENA]
¡û
>WENV180707814
ODFJ01000030
[ODFJ] human metagenome; G_DNA_Tongue dorsum
121978
122053
+
His
GTG
[ENA]
¡û
>WENV180719353
ODGJ01000910
[ODGJ] human metagenome; G_DNA_Tongue dorsum
16404
16329
-
His
GTG
[ENA]
¡û
>WENV180724255
ODGR01000286
[ODGR] human metagenome; G_DNA_Tongue dorsum
15258
15183
-
His
GTG
[ENA]
¡û
>WENV180754416
ODHT01298261
[ODHT] human metagenome; G_DNA_Stool
38
113
+
His
GTG
[ENA]
¡û
>WENV180768811
ODIG01017974
[ODIG] human metagenome; G_DNA_Tongue dorsum
1030
955
-
His
GTG
[ENA]
¡û
>WENV180773496
ODIJ01000368
[ODIJ] human metagenome; G_DNA_Tongue dorsum
15282
15207
-
His
GTG
[ENA]
¡û
>WENV180775478
ODIK01000656
[ODIK] human metagenome; G_DNA_Tongue dorsum
14676
14751
+
His
GTG
[ENA]
¡û
>WENV180780142
ODIN01055466
[ODIN] human metagenome; G_DNA_Throat
187
112
-
His
GTG
[ENA]
¡û
>WENV180781249
ODIO01027697
[ODIO] human metagenome; G_DNA_Stool
347
272
-
His
GTG
[ENA]
¡û
>WENV180783668
ODIQ01016816
[ODIQ] human metagenome; G_DNA_Tongue dorsum
81
156
+
His
GTG
[ENA]
¡û
>WENV180789691
ODIT01000291
[ODIT] human metagenome; G_DNA_Tongue dorsum
15266
15341
+
His
GTG
[ENA]
¡û
>WENV180792304
ODIW01000242
[ODIW] human metagenome; G_DNA_Tongue dorsum
36376
36451
+
His
GTG
[ENA]
¡û
>WENV180800013
ODJC01052421
[ODJC] human metagenome; G_DNA_Stool
246
321
+
His
GTG
[ENA]
¡û
>WENV180805893
ODJH01000465
[ODJH] human metagenome; G_DNA_Tongue dorsum
22840
22765
-
His
GTG
[ENA]
¡û
>WENV180816075
ODJP01004139
[ODJP] human metagenome; G_DNA_Tongue dorsum
65
140
+
His
GTG
[ENA]
¡û
>WENV180819996
ODJR01001254
[ODJR] human metagenome; G_DNA_Tongue dorsum
98
173
+
His
GTG
[ENA]
¡û
>WENV180821684
ODJS01035367
[ODJS] human metagenome; G_DNA_Tongue dorsum
259
184
-
His
GTG
[ENA]
¡û
>WENV180866097
ODLJ01004526
[ODLJ] human metagenome; G_DNA_Tongue dorsum
81
156
+
His
GTG
[ENA]
¡û
>WENV180879959
ODLZ01004572
[ODLZ] human metagenome; G_DNA_Tongue dorsum
3534
3459
-
His
GTG
[ENA]
¡û
>WENV180880262
ODLZ01012481
[ODLZ] human metagenome; G_DNA_Tongue dorsum
2388
2313
-
His
GTG
[ENA]
¡û
>WENV180882664
ODMC01000298
[ODMC] human metagenome; G_DNA_Tongue dorsum
15258
15183
-
His
GTG
[ENA]
¡û
>WENV180896655
ODNI01001438
[ODNI] human metagenome; G_DNA_Tongue dorsum
81
156
+
His
GTG
[ENA]
¡û
>WENV180926893
ODTL01078927
[ODTL] human metagenome; G_DNA_Stool
261
186
-
His
GTG
[ENA]
¡û
>WENV180949190
ODUG01009759
[ODUG] human metagenome; G_DNA_Tongue dorsum
3256
3331
+
His
GTG
[ENA]
¡û
>WENV180951197
ODUH01012335
[ODUH] human metagenome; G_DNA_Subgingival plaque
98
173
+
His
GTG
[ENA]
¡û
>WENV180959507
ODUM01000980
[ODUM] human metagenome; G_DNA_Tongue dorsum
2189
2264
+
His
GTG
[ENA]
¡û
>WENV180972159
ODUU01261959
[ODUU] human metagenome; G_DNA_Stool
84
9
-
His
GTG
[ENA]
¡û
>WENV180985408
ODVJ01003982
[ODVJ] human metagenome; G_DNA_Tongue dorsum
3555
3480
-
His
GTG
[ENA]
¡û
>WENV180990037
ODVN01000295
[ODVN] human metagenome; G_DNA_Tongue dorsum
37995
38070
+
His
GTG
[ENA]
¡û
>WENV180994231
ODVQ01046407
[ODVQ] human metagenome; G_DNA_Stool
258
183
-
His
GTG
[ENA]
¡û
>WENV181011708
ODWI01086662
[ODWI] human metagenome; G_DNA_Tongue dorsum
205
280
+
His
GTG
[ENA]
¡û
>WENV181016099
ODWR01000200
[ODWR] human metagenome; G_DNA_Tongue dorsum
15260
15185
-
His
GTG
[ENA]
¡û
>WENV181033089
ODXN01002486
[ODXN] human metagenome; G_DNA_Tongue dorsum
8679
8604
-
His
GTG
[ENA]
¡û
>WENV181040702
ODXS01000520
[ODXS] human metagenome; G_DNA_Tongue dorsum
6570
6645
+
His
GTG
[ENA]
¡û
>WENV181046485
ODXW01043121
[ODXW] human metagenome; G_DNA_Tongue dorsum
86
161
+
His
GTG
[ENA]
¡û
>WENV181057497
ODYL01000215
[ODYL] human metagenome; G_DNA_Tongue dorsum
15259
15184
-
His
GTG
[ENA]
¡û
>WENV181060290
ODYM01104235
[ODYM] human metagenome; G_DNA_Tongue dorsum
13
88
+
His
GTG
[ENA]
¡û
>WENV181062216
ODYN01090239
[ODYN] human metagenome; G_DNA_Stool
366
291
-
His
GTG
[ENA]
¡û
>WENV181065062
ODYP01263767
[ODYP] human metagenome; G_DNA_Supragingival plaque
46
121
+
His
GTG
[ENA]
¡û
>WENV181068508
ODZZ01000192
[ODZZ] human metagenome; G_DNA_Tongue dorsum
9356
9281
-
His
GTG
[ENA]
¡û
>WENV181075033
OEAO01057311
[OEAO] human metagenome; G_DNA_Tongue dorsum
159
84
-
His
GTG
[ENA]
¡û
>WENV181075240
OEAO01094299
[OEAO] human metagenome; G_DNA_Tongue dorsum
173
248
+
His
GTG
[ENA]
¡û
>WENV181075302
OEAO01119492
[OEAO] human metagenome; G_DNA_Tongue dorsum
1
76
+
His
GTG
[ENA]
¡û
>WENV181086241
OEAY01000215
[OEAY] human metagenome; G_DNA_Tongue dorsum
39910
39835
-
His
GTG
[ENA]
¡û
>WENV181089991
OEBA01216730
[OEBA] human metagenome; G_DNA_Stool
175
100
-
His
GTG
[ENA]
¡û
>WENV181094796
OEBY01001167
[OEBY] human metagenome; G_DNA_Tongue dorsum
408
483
+
His
GTG
[ENA]
¡û
>WENV181098089
OECA01079252
[OECA] human metagenome; G_DNA_Tongue dorsum
69
144
+
His
GTG
[ENA]
¡û
>WENV181103276
OECT01057961
[OECT] human metagenome; G_DNA_Tongue dorsum
81
156
+
His
GTG
[ENA]
¡û
>WENV181104941
OEED01000501
[OEED] human metagenome; G_DNA_Tongue dorsum
12537
12612
+
His
GTG
[ENA]
¡û
>WENV181109467
OEEJ01071379
[OEEJ] human metagenome; G_DNA_Tongue dorsum
87
12
-
His
GTG
[ENA]
¡û
>WENV181112098
OEEL01000145
[OEEL] human metagenome; G_DNA_Tongue dorsum
339
264
-
His
GTG
[ENA]
¡û
>WENV181130759
OEFY01063177
[OEFY] human metagenome; G_DNA_Throat
206
281
+
His
GTG
[ENA]
¡û
>WENV181136839
OEGI01087358
[OEGI] human metagenome; G_DNA_Supragingival plaque
106
31
-
His
GTG
[ENA]
¡û
>WENV181138327
OEGN01000023
[OEGN] human metagenome; G_DNA_Tongue dorsum
350
275
-
His
GTG
[ENA]
¡û
>WENV181626182
OGML01010773
[OGML] metagenome; Human gut stool
3203
3278
+
His
GTG
[ENA]
¡û
>WENV181659462
OGOE01013951
[OGOE] human gut metagenome; faeces
1416
1341
-
His
GTG
[ENA]
¡û
>WENV181795482
OGRT01000207
[OGRT] human gut metagenome; faeces
31221
31296
+
His
GTG
[ENA]
¡û
>WENV181914891
OGYF01001668
[OGYF] human gut metagenome; faeces
259
184
-
His
GTG
[ENA]
¡û
>WENV182135791
OHKJ01004453
[OHKJ] human gut metagenome; feces
946
1021
+
His
GTG
[ENA]
¡û
>WENV182208433
OHPX01011233
[OHPX] human gut metagenome; feces
1325
1250
-
His
GTG
[ENA]
¡û
>WENV182213064
OHQG01043486
[OHQG] human gut metagenome; feces
494
569
+
His
GTG
[ENA]
¡û
>WENV182525201
OIWT01001502
[OIWT] human gut metagenome; faeces
23018
22943
-
His
GTG
[ENA]
¡û
>WENV182606512
OJJT01017751
[OJJT] metagenome; faeces
951
876
-
His
GTG
[ENA]
¡û
>WENV182638925
OJLA01030038
[OJLA] metagenome; faeces
1453
1528
+
His
GTG
[ENA]
¡û
>WENV182748152
OJQW01001225
[OJQW] human gut metagenome; stool sample
6704
6779
+
His
GTG
[ENA]
¡û
>WENV182796625
OJSQ01042457
[OJSQ] human gut metagenome; human gut
133
58
-
His
GTG
[ENA]
¡û
>WENV182883992
OKSB01096363
[OKSB] human gut metagenome; faeces
284
209
-
His
GTG
[ENA]
¡û
>WENV182885689
OKSC01017958
[OKSC] human gut metagenome; faeces
615
690
+
His
GTG
[ENA]
¡û
>W141291748
JATQ01000007
Bacillota
[Eubacterium] sulci ATCC 35585 [JATQ]
346957
347032
+
His
GTG
[ENA]
¡û
>WENV183037679
OLGA01052512
[OLGA] human gut metagenome; faeces
735
660
-
His
GTG
[ENA]
¡û
>WENV183040104
OLGB01043417
[OLGB] human gut metagenome; faeces
402
477
+
His
GTG
[ENA]
¡û
>WENV183094828
OLND01000240
[OLND] human gut metagenome; faeces
69642
69717
+
His
GTG
[ENA]
¡û
>WENV183112028
OLNP01000037
[OLNP] human gut metagenome; faeces
186
261
+
His
GTG
[ENA]
¡û
>WENV183114884
OLNQ01002171
[OLNQ] human gut metagenome; faeces
98
173
+
His
GTG
[ENA]
¡û
>WENV183162755
OLOW01001921
[OLOW] human gut metagenome; faeces
10197
10122
-
His
GTG
[ENA]
¡û
>WENV183229841
OLQT01000001
[OLQT] human gut metagenome; faeces
392485
392410
-
His
GTG
[ENA]
¡û
>WENV183273789
OLRX01056863
[OLRX] human gut metagenome; faeces
397
322
-
His
GTG
[ENA]
¡û
>WENV183281358
OLSB01079321
[OLSB] human gut metagenome; faeces
120
195
+
His
GTG
[ENA]
¡û
>WENV183293397
OLSK01000365
[OLSK] human gut metagenome; faeces
41866
41791
-
His
GTG
[ENA]
¡û
>WENV183705246
PDWI01001267
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
38117
38042
-
His
GTG
[ENA]
¡û
>WENV183707411
PDWI01008303
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2633
2708
+
His
GTG
[ENA]
¡û
>WENV183707760
PDWI01010491
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6911
6836
-
His
GTG
[ENA]
¡û
>WENV183712494
PDWI01101835
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
76
1
-
His
GTG
[ENA]
¡û
>WENV183712718
PDWI01111240
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6
81
+
His
GTG
[ENA]
¡û
>WENV183712968
PDWI01120249
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
94
19
-
His
GTG
[ENA]
¡û
>WENV183715614
PDWI01250507
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
94
19
-
His
GTG
[ENA]
¡û
>WENV183754732
PPYE01101113
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
210
285
+
His
GTG
[ENA]
¡û
>WENV170071195
CDZQ01048863
[CDZQ] gut metagenome; human stools
22805
22730
-
His
GTG
[ENA]
¡û
>WENV170686010
LFRM01121897
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
18943
18868
-
His
GTG
[ENA]
¡û
>WENV170689708
LFRM01308009
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4853
4778
-
His
GTG
[ENA]
¡û
>WENV170717187
LSQX01027328
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
81
156
+
His
GTG
[ENA]
¡û
>WENV170718476
LSQX01077681
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
23491
23416
-
His
GTG
[ENA]
¡û
>WENV170718612
LSQX01083361
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
207
282
+
His
GTG
[ENA]
¡û
>C191138169
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1832702
1832627
-
His
GTG
-
¡û
>W1910229093
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
357075
357150
+
His
GTG
[ENA]
¡û
>W1810797795
QRMS01000001
Bacillota
Emergencia timonensis AM07-24 [QRMS]
1105651
1105726
+
His
GTG
[ENA]
¡û
>C151090377
CP012068
Bacillota
Eubacterium sulci ATCC 35585 [CP012068]
1172310
1172235
-
His
GTG
-
¡û
>W2010250067
CABIXY020000004
Bacillota
Eubacteriaceae bacterium [CABIXY]
165287
165212
-
His
GTG
[ENA]
¡û
>W2010275602
CABKWE020000009
Bacillota
Emergencia timonensis [CABKWE]
1206420
1206495
+
His
GTG
[ENA]
¡û
>W2010383069
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
357075
357150
+
His
GTG
[ENA]
¡û
>W2011317374
QWEQ01000007
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
11946
11871
-
His
GTG
[ENA]
¡û
>W2011317485
QWES01000008
Bacillota
Anaerotruncus sp. 80 [QWES]
11945
11870
-
His
GTG
[ENA]
¡û
>W2011320286
QWLE01000167
Bacillota
Neglecta sp. X4 [QWLE]
282
207
-
His
GTG
[ENA]
¡û
>W2011336879
QXWK01000008
Bacillota
Anaerotruncus colihominis 28 [QXWK]
11945
11870
-
His
GTG
[ENA]
¡û
>W2011823152
UGGN01000001
Bacillota
[Eubacterium] infirmum NCTC12940 [UGGN]
1284857
1284932
+
His
GTG
[ENA]
¡û
>W2110122195
CAJSZK010000013
Bacillota
Clostridia bacterium [CAJSZK]
12437
12362
-
His
GTG
[ENA]
¡û
>W2110122795
CAJTAE010000004
Bacillota
Clostridia bacterium [CAJTAE]
175885
175960
+
His
GTG
[ENA]
¡û
>W2110124136
CAJTBY010000015
Bacillota
Clostridia bacterium [CAJTBY]
12703
12628
-
His
GTG
[ENA]
¡û
>W2110507240
JAFJZZ010000007
Bacillota
Clostridium aminobutyricum DSM 2634 [JAFJZZ]
50907
50832
-
His
GTG
[ENA]
¡û
>W2110730239
JAJCMY010000022
Bacillota
Emergencia timonensis DFI.3.26 [JAJCMY]
3051
3126
+
His
GTG
[ENA]
¡û
>C231016071
AP025567
Bacillota
Emergencia timonensis CE91-St48 [AP025567]
2552295
2552220
-
His
GTG
-
¡û
>C231016122
AP025568
Bacillota
Emergencia timonensis CE91-St49 [AP025568]
2552286
2552211
-
His
GTG
-
¡û
>C241121317
CP047591
Bacillota
Aminipila terrae CBA3637 [CP047591]
2635777
2635852
+
His
GTG
-
¡û
>W1511351227
JRNA01000010
Bacillota
Clostridiales bacterium S5-A14a [JRNA]
66610
66535
-
His
GTG
[ENA]
¡û
>W121021722
AGWI01000030
Bacillota
[Eubacterium] infirmum F0142 [AGWI]
8474
8549
+
His
GTG
[ENA]
¡û
>W1610501822
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1206420
1206495
+
His
GTG
[ENA]
¡û
>W1610606796
LFTG01000177
Bacillota
Clostridiales bacterium DTU035 [LFTG]
4853
4778
-
His
GTG
[ENA]
¡û
>W1710495292
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1206420
1206495
+
His
GTG
[ENA]
¡û
>W1710560483
FONK01000008
Bacillota
Peptostreptococcaceae bacterium pGA-8 [FONK]
600
525
-
His
GTG
[ENA]
¡û
>W1710728083
LFTG01000177
Bacillota
Clostridiales bacterium DTU035 [LFTG]
4853
4778
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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