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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270451 (74 seq.)
>W1710932028
LOHU01000080
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
110753
110678
-
Thr
CGT
[ENA]
¡û
>W1711229366
LXYJ01000022
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
51808
51733
-
Thr
CGT
[ENA]
¡û
>W1711334264
MBQE01000006
Alphaproteobacteria
Stappia indica [MBQE]
244646
244721
+
Thr
CGT
[ENA]
¡û
>W1711388548
MEHS01000004
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
2106218
2106143
-
Thr
CGT
[ENA]
¡û
>W1711388576
MEHT01000017
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
137011
137086
+
Thr
CGT
[ENA]
¡û
>W1711827062
MXQE01000026
Alphaproteobacteria
Labrenzia sp. CP4 [MXQE]
9765
9840
+
Thr
CGT
[ENA]
¡û
>C171097444
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
3088412
3088487
+
Thr
CGT
-
¡û
>w020453
AAUW01000017
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
34109
34037
-
Thr
CGT
[ENA]
¡û
>WENV180105451
OAPD01060121
[OAPD] marine metagenome; 2010
281
206
-
Thr
CGT
[ENA]
¢þ
>WENV180391319
OBPM01086676
[OBPM] marine metagenome; ENVO:00002010
85
160
+
Thr
CGT
[ENA]
¢þ
>W141152652
AXBY01000056
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
635699
635774
+
Thr
CGT
[ENA]
¡û
>W08005806
ABIE01000009
Alphaproteobacteria
Phaeobacter inhibens 2.1 [ABIE]
88991
88919
-
Thr
CGT
[ENA]
¡û
>W08005851
ABIF01000004
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
188161
188236
+
Thr
CGT
[ENA]
¡û
>WENV182951540
OKVU01001410
[OKVU] human gut metagenome; human gut
724
649
-
Thr
CGT
[ENA]
¢þ
>WENV182953520
OKVY01003771
[OKVY] human gut metagenome; human gut
328
403
+
Thr
CGT
[ENA]
¢þ
>WENV170015531
AZIH01003222
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
861
936
+
Thr
CGT
[ENA]
¢þ
>WENV170229750
CEQG01153594
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1901
1976
+
Thr
CGT
[ENA]
¢þ
>WENV170674343
LAZR01058697
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
29
104
+
Thr
CGT
[ENA]
¢þ
>WENV170682987
LFIK01003087
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
3126
3051
-
Thr
CGT
[ENA]
¢þ
>WENV170782418
MAAC01009759
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
25923
25998
+
Thr
CGT
[ENA]
¢þ
>WENV170962717
MRWF01024622
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
9904
9979
+
Thr
CGT
[ENA]
¢þ
>C181008441
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
3679886
3679961
+
Thr
CGT
-
¡û
>C181008485
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
3734871
3734946
+
Thr
CGT
-
¡û
>C181008555
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
3731881
3731956
+
Thr
CGT
-
¡û
>C181008598
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
3654556
3654631
+
Thr
CGT
-
¡û
>C181008712
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
3553741
3553816
+
Thr
CGT
-
¡û
>C181008787
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
3420561
3420486
-
Thr
CGT
-
¡û
>C181008885
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
3515811
3515886
+
Thr
CGT
-
¡û
>C181008942
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
3609098
3609173
+
Thr
CGT
-
¡û
>C181009014
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
3491955
3492030
+
Thr
CGT
-
¡û
>C181009056
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
3656232
3656307
+
Thr
CGT
-
¡û
>C181009186
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
3714138
3714213
+
Thr
CGT
-
¡û
>C181009228
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
3509830
3509905
+
Thr
CGT
-
¡û
>C181009342
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
3603097
3603172
+
Thr
CGT
-
¡û
>C181009415
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
3776671
3776746
+
Thr
CGT
-
¡û
>C181009458
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
3487396
3487471
+
Thr
CGT
-
¡û
>C181009515
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
3763093
3763168
+
Thr
CGT
-
¡û
>C181009571
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
3716752
3716827
+
Thr
CGT
-
¡û
>C181009628
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
3620853
3620928
+
Thr
CGT
-
¡û
>C181009685
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
3631042
3631117
+
Thr
CGT
-
¡û
>C181009814
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
3731885
3731960
+
Thr
CGT
-
¡û
>C181009930
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
3678720
3678795
+
Thr
CGT
-
¡û
>C181009972
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
3515811
3515886
+
Thr
CGT
-
¡û
>C181049046
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
3610045
3610120
+
Thr
CGT
-
¡û
>C181049362
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
2804520
2804595
+
Thr
CGT
-
¡û
>C181067726
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
3780204
3780129
-
Thr
CGT
-
¡û
>C181108006
CP024899
Alphaproteobacteria
Rhodobaca barguzinensis alga05 [CP024899]
2548917
2548842
-
Thr
CGT
-
¡û
>C191083143
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
3685627
3685702
+
Thr
CGT
-
¡û
>C191083198
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
3661103
3661178
+
Thr
CGT
-
¡û
>C191083246
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
2645939
2646014
+
Thr
CGT
-
¡û
>W1910443076
FWFT01000002
Alphaproteobacteria
Pseudooctadecabacter jejudonensis CECT 8397 [FWFT]
532511
532436
-
Thr
CGT
[ENA]
¡û
>C141011193
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
3679753
3679828
+
Thr
CGT
[Ensembl]
¡û
>W1910501808
FYAU01000024
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
128672
128747
+
Thr
CGT
[ENA]
¡û
>W1910501876
FYAV01000071
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
33429
33504
+
Thr
CGT
[ENA]
¡û
>W1910501917
FYAW01000022
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
403852
403777
-
Thr
CGT
[ENA]
¡û
>W1911494870
OBML01000003
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
182933
183008
+
Thr
CGT
[ENA]
¡û
>W1810101668
PGTB01000135
Alphaproteobacteria
Pseudooceanicola lipolyticus 157 [PGTB]
1789
1864
+
Thr
CGT
[ENA]
¡û
>W1810504227
QBKS01000001
Alphaproteobacteria
Litoreibacter ponti DSM 100977 [QBKS]
2737555
2737630
+
Thr
CGT
[ENA]
¡û
>W1810591673
QFVT01000016
Alphaproteobacteria
Litorivita pollutaquae FSX-11 [QFVT]
2090
2015
-
Thr
CGT
[ENA]
¡û
>C11117243
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
377217
377292
+
Thr
CGT
[Ensembl]
¡û
>W1511388756
JSWJ01000004
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
323855
323930
+
Thr
CGT
[ENA]
¡û
>W1511388836
JSWK01000017
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
110375
110300
-
Thr
CGT
[ENA]
¡û
>C121003787
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
3661044
3661119
+
Thr
CGT
[Ensembl]
¡û
>C161037899
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
622362
622437
+
Thr
CGT
-
¡û
>W1610016175
AOQA01000011
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
109305
109230
-
Thr
CGT
[ENA]
¡û
>W1610789497
LOHU01000080
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
110753
110678
-
Thr
CGT
[ENA]
¡û
>W1611013236
LXYJ01000022
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
51808
51733
-
Thr
CGT
[ENA]
¡û
>WENV078323
AAFZ01026463
Fossil microbial community from Whale Fall (Santa Cruz Basin)
215
140
-
Thr
CGT
[ENA]
>W1611066231
MBQE01000006
Alphaproteobacteria
Stappia indica [MBQE]
244646
244721
+
Thr
CGT
[ENA]
¡û
>W1710013066
AOQA01000011
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
109305
109230
-
Thr
CGT
[ENA]
¡û
>W1710549575
FOEP01000015
Alphaproteobacteria
Thalassovita taeanensis taeanense [FOEP]
413
338
-
Thr
CGT
[ENA]
¡û
>W1710555046
FOIZ01000002
Alphaproteobacteria
Cognatiyoonia koreensis [FOIZ]
728051
728126
+
Thr
CGT
[ENA]
¡û
>W1710574862
FOYO01000001
Alphaproteobacteria
Litoreibacter janthinus [FOYO]
405821
405746
-
Thr
CGT
[ENA]
¡û
>W1710660267
JXMT01000046
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
27041
26966
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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