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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270451 (12 seq.)
>WENV180470036
OBYM01042180
[OBYM] human gut metagenome; faeces
490
415
-
Thr
CGT
[ENA]
¡û
>WENV181509597
OGGQ01007149
[OGGQ] metagenome; Human gut stool
3218
3143
-
Thr
CGT
[ENA]
¡û
>WENV181532126
OGHO01035548
[OGHO] metagenome; Human gut stool
971
896
-
Thr
CGT
[ENA]
¡û
>WENV181634828
OGMW01027266
[OGMW] metagenome; Human gut stool
735
660
-
Thr
CGT
[ENA]
¡û
>WENV181874537
OGXA01032372
[OGXA] human gut metagenome; faeces
360
435
+
Thr
CGT
[ENA]
¡û
>WENV182609643
OJJV01014507
[OJJV] metagenome; faeces
1627
1702
+
Thr
CGT
[ENA]
¡û
>WENV183160077
OLOU01047989
[OLOU] human gut metagenome; faeces
24
99
+
Thr
CGT
[ENA]
¡û
>W1810871654
QUDE01000002
Bacillota
Ruminococcaceae bacterium AM07-15 [QUDE]
20876
20951
+
Thr
CGT
[ENA]
¡û
>W1810880299
QUJM01000002
Bacillota
Ruminococcaceae bacterium AM28-23LB [QUJM]
27333
27258
-
Thr
CGT
[ENA]
¡û
>W2010258495
CABJDS020000002
Bacillota
Clostridiales bacterium [CABJDS]
20876
20951
+
Thr
CGT
[ENA]
¡û
>W2110223822
JACJKW010000013
Bacillota
Intestinimonas butyriciproducens An565 [JACJKW]
68903
68828
-
Thr
CGT
[ENA]
¡û
>W2110621519
JAHLPO010000013
Bacillota
Intestinimonas sp. MSJ-38 [JAHLPO]
69932
70007
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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