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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270464 (143 seq.)
>W1711581279
MNTW01000040
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
25726
25801
+
Thr
GGT
[ENA]
¡û
>W1711581280
MNTW01000040
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
25866
25941
+
Thr
GGT
[ENA]
¡û
>C171129817
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
2712624
2712549
-
Thr
GGT
-
¡û
>C171129818
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
2712484
2712409
-
Thr
GGT
-
¡û
>WENV180324041
OBKR01129710
[OBKR] human gut metagenome; feces
251
326
+
Thr
GGT
[ENA]
¡û
>WENV180762850
ODHZ01395462
[ODHZ] human metagenome; G_DNA_Stool
194
119
-
Thr
GGT
[ENA]
¡û
>WENV180829640
ODKA01280801
[ODKA] human metagenome; G_DNA_Stool
139
214
+
Thr
GGT
[ENA]
¡û
>WENV180909198
ODQJ01110492
[ODQJ] human metagenome; G_DNA_Stool
301
226
-
Thr
GGT
[ENA]
¡û
>WENV181451186
OGDY01003223
[OGDY] metagenome; Human gut stool
231
156
-
Thr
GGT
[ENA]
¡û
>WENV181504372
OGGJ01069962
[OGGJ] metagenome; Human gut stool
563
638
+
Thr
GGT
[ENA]
¡û
>WENV181505069
OGGK01002953
[OGGK] metagenome; Human gut stool
7569
7494
-
Thr
GGT
[ENA]
¡û
>WENV181529280
OGHL01062871
[OGHL] metagenome; Human gut stool
49
124
+
Thr
GGT
[ENA]
¡û
>WENV181540195
OGIA01010508
[OGIA] metagenome; Human gut stool
1414
1339
-
Thr
GGT
[ENA]
¡û
>WENV181578393
OGJY01001254
[OGJY] metagenome; Human gut stool
9124
9199
+
Thr
GGT
[ENA]
¡û
>WENV181603263
OGLH01044727
[OGLH] metagenome; Human gut stool
348
423
+
Thr
GGT
[ENA]
¡û
>WENV181621888
OGMF01020018
[OGMF] metagenome; Human gut stool
119
194
+
Thr
GGT
[ENA]
¡û
>WENV181621889
OGMF01020018
[OGMF] metagenome; Human gut stool
259
334
+
Thr
GGT
[ENA]
¡û
>WENV181631380
OGMR01016299
[OGMR] metagenome; Human gut stool
671
746
+
Thr
GGT
[ENA]
¡û
>WENV181637314
OGNB01004048
[OGNB] metagenome; Human gut stool
580
655
+
Thr
GGT
[ENA]
¡û
>WENV181641100
OGNF01001356
[OGNF] metagenome; Human gut stool
16692
16767
+
Thr
GGT
[ENA]
¡û
>WENV181676182
OGOP01042438
[OGOP] human gut metagenome; faeces
469
544
+
Thr
GGT
[ENA]
¡û
>WENV181676183
OGOP01042438
[OGOP] human gut metagenome; faeces
609
684
+
Thr
GGT
[ENA]
¡û
>WENV181678124
OGOQ01053971
[OGOQ] human gut metagenome; faeces
538
463
-
Thr
GGT
[ENA]
¡û
>WENV181710291
OGPN01051254
[OGPN] human gut metagenome; faeces
593
518
-
Thr
GGT
[ENA]
¡û
>WENV181714924
OGPR01010464
[OGPR] human gut metagenome; faeces
1014
939
-
Thr
GGT
[ENA]
¡û
>WENV181727611
OGQA01001316
[OGQA] human gut metagenome; faeces
11712
11637
-
Thr
GGT
[ENA]
¡û
>WENV181739227
OGQI01085891
[OGQI] human gut metagenome; faeces
556
481
-
Thr
GGT
[ENA]
¡û
>WENV181747465
OGQN01036338
[OGQN] human gut metagenome; faeces
12
87
+
Thr
GGT
[ENA]
¡û
>WENV181753037
OGQQ01052929
[OGQQ] human gut metagenome; faeces
671
746
+
Thr
GGT
[ENA]
¡û
>WENV181767105
OGQZ01016902
[OGQZ] human gut metagenome; faeces
1301
1226
-
Thr
GGT
[ENA]
¡û
>WENV181772912
OGRD01034417
[OGRD] human gut metagenome; faeces
618
693
+
Thr
GGT
[ENA]
¡û
>WENV181772913
OGRD01034417
[OGRD] human gut metagenome; faeces
758
833
+
Thr
GGT
[ENA]
¡û
>WENV181785592
OGRM01059994
[OGRM] human gut metagenome; faeces
387
312
-
Thr
GGT
[ENA]
¡û
>WENV181874605
OGXA01041817
[OGXA] human gut metagenome; faeces
357
432
+
Thr
GGT
[ENA]
¡û
>WENV181877259
OGXD01003544
[OGXD] human gut metagenome; faeces
4455
4530
+
Thr
GGT
[ENA]
¡û
>WENV181883977
OGXI01024882
[OGXI] human gut metagenome; faeces
1577
1502
-
Thr
GGT
[ENA]
¡û
>WENV181885274
OGXJ01010465
[OGXJ] human gut metagenome; faeces
846
921
+
Thr
GGT
[ENA]
¡û
>WENV181891461
OGXO01023633
[OGXO] human gut metagenome; faeces
873
798
-
Thr
GGT
[ENA]
¡û
>WENV181893957
OGXQ01011792
[OGXQ] human gut metagenome; faeces
1480
1555
+
Thr
GGT
[ENA]
¡û
>WENV181898647
OGXT01009241
[OGXT] human gut metagenome; faeces
1431
1506
+
Thr
GGT
[ENA]
¡û
>WENV181902689
OGXW01071825
[OGXW] human gut metagenome; faeces
161
86
-
Thr
GGT
[ENA]
¡û
>WENV181903064
OGXX01000313
[OGXX] human gut metagenome; faeces
32338
32413
+
Thr
GGT
[ENA]
¡û
>WENV181929116
OGYO01011066
[OGYO] human gut metagenome; faeces
3081
3006
-
Thr
GGT
[ENA]
¡û
>WENV181942492
OGYZ01000298
[OGYZ] human gut metagenome; faeces
25442
25517
+
Thr
GGT
[ENA]
¡û
>WENV181952927
OGZI01001510
[OGZI] human gut metagenome; faeces
22527
22452
-
Thr
GGT
[ENA]
¡û
>WENV181952928
OGZI01001510
[OGZI] human gut metagenome; faeces
22387
22312
-
Thr
GGT
[ENA]
¡û
>WENV181955364
OGZK01002845
[OGZK] human gut metagenome; faeces
10240
10315
+
Thr
GGT
[ENA]
¡û
>WENV181960992
OGZO01002561
[OGZO] human gut metagenome; faeces
9138
9213
+
Thr
GGT
[ENA]
¡û
>WENV181972814
OHAA01003370
[OHAA] human gut metagenome; faeces
8007
7932
-
Thr
GGT
[ENA]
¡û
>WENV181979925
OHAF01004544
[OHAF] human gut metagenome; faeces
976
901
-
Thr
GGT
[ENA]
¡û
>WENV181984560
OHAI01020569
[OHAI] human gut metagenome; faeces
592
667
+
Thr
GGT
[ENA]
¡û
>WENV181984891
OHAJ01000142
[OHAJ] human gut metagenome; faeces
20907
20832
-
Thr
GGT
[ENA]
¡û
>WENV181991747
OHAQ01005728
[OHAQ] human gut metagenome; faeces
746
821
+
Thr
GGT
[ENA]
¡û
>WENV181995903
OHAT01015266
[OHAT] human gut metagenome; faeces
516
591
+
Thr
GGT
[ENA]
¡û
>WENV182005856
OHBE01025248
[OHBE] human gut metagenome; faeces
140
215
+
Thr
GGT
[ENA]
¡û
>WENV182009717
OHBJ01036540
[OHBJ] human gut metagenome; faeces
716
791
+
Thr
GGT
[ENA]
¡û
>WENV182011579
OHBM01001766
[OHBM] human gut metagenome; faeces
2102
2177
+
Thr
GGT
[ENA]
¡û
>WENV182128571
OHJY01006561
[OHJY] human gut metagenome; feces
2848
2773
-
Thr
GGT
[ENA]
¡û
>WENV182509705
OIWK01000017
[OIWK] human gut metagenome; faeces
134034
133959
-
Thr
GGT
[ENA]
¡û
>WENV182537191
OIXH01004254
[OIXH] human gut metagenome; faeces
43
118
+
Thr
GGT
[ENA]
¡û
>WENV182609867
OJJV01028754
[OJJV] metagenome; faeces
115
190
+
Thr
GGT
[ENA]
¡û
>WENV182609868
OJJV01028754
[OJJV] metagenome; faeces
255
330
+
Thr
GGT
[ENA]
¡û
>WENV182616143
OJKC01016517
[OJKC] metagenome; faeces
1014
1089
+
Thr
GGT
[ENA]
¡û
>WENV182616144
OJKC01016517
[OJKC] metagenome; faeces
1154
1229
+
Thr
GGT
[ENA]
¡û
>WENV182655767
OJMI01082571
[OJMI] human gut metagenome; feces
119
194
+
Thr
GGT
[ENA]
¡û
>WENV182676314
OJNQ01077406
[OJNQ] human gut metagenome; feces
409
484
+
Thr
GGT
[ENA]
¡û
>WENV182720155
OJPN01003994
[OJPN] human gut metagenome; stool sample
194
119
-
Thr
GGT
[ENA]
¡û
>WENV182726492
OJPU01011160
[OJPU] human gut metagenome; stool sample
1182
1107
-
Thr
GGT
[ENA]
¡û
>WENV182731870
OJQA01009012
[OJQA] human gut metagenome; stool sample
1500
1425
-
Thr
GGT
[ENA]
¡û
>WENV182731871
OJQA01009012
[OJQA] human gut metagenome; stool sample
1360
1285
-
Thr
GGT
[ENA]
¡û
>WENV182745068
OJQS01012873
[OJQS] human gut metagenome; stool sample
119
194
+
Thr
GGT
[ENA]
¡û
>WENV182869817
OKRT01027028
[OKRT] human gut metagenome; faeces
636
561
-
Thr
GGT
[ENA]
¡û
>WENV182881226
OKSA01005415
[OKSA] human gut metagenome; faeces
4401
4476
+
Thr
GGT
[ENA]
¡û
>WENV182882577
OKSB01000809
[OKSB] human gut metagenome; faeces
10158
10083
-
Thr
GGT
[ENA]
¡û
>WENV182888909
OKSE01010102
[OKSE] human gut metagenome; faeces
119
194
+
Thr
GGT
[ENA]
¡û
>WENV182888910
OKSE01010102
[OKSE] human gut metagenome; faeces
259
334
+
Thr
GGT
[ENA]
¡û
>WENV182891664
OKSH01002646
[OKSH] human gut metagenome; faeces
12127
12052
-
Thr
GGT
[ENA]
¡û
>WENV183026871
OLFU01006844
[OLFU] human gut metagenome; faeces
4172
4247
+
Thr
GGT
[ENA]
¡û
>WENV183028260
OLFV01001498
[OLFV] human gut metagenome; faeces
21706
21631
-
Thr
GGT
[ENA]
¡û
>WENV183028261
OLFV01001498
[OLFV] human gut metagenome; faeces
21566
21491
-
Thr
GGT
[ENA]
¡û
>WENV183030098
OLFW01023257
[OLFW] human gut metagenome; faeces
90
165
+
Thr
GGT
[ENA]
¡û
>WENV183032809
OLFY01000667
[OLFY] human gut metagenome; faeces
28629
28704
+
Thr
GGT
[ENA]
¡û
>WENV183034311
OLFZ01000010
[OLFZ] human gut metagenome; faeces
198193
198118
-
Thr
GGT
[ENA]
¡û
>WENV183258312
OLRN01002435
[OLRN] human gut metagenome; faeces
8160
8085
-
Thr
GGT
[ENA]
¡û
>WENV183275268
OLRY01022111
[OLRY] human gut metagenome; faeces
92
167
+
Thr
GGT
[ENA]
¡û
>WENV183324465
OLVY01014201
[OLVY] human gut metagenome; feces
2180
2255
+
Thr
GGT
[ENA]
¡û
>WENV183330489
OLWB01009602
[OLWB] human gut metagenome; faeces
1118
1043
-
Thr
GGT
[ENA]
¡û
>WENV183338782
OLWK01001725
[OLWK] human gut metagenome; feces
4889
4814
-
Thr
GGT
[ENA]
¡û
>WENV183340131
OLWL01003490
[OLWL] human gut metagenome; feces
5248
5323
+
Thr
GGT
[ENA]
¡û
>WENV183377179
OLYB01007717
[OLYB] human gut metagenome; feces
3439
3514
+
Thr
GGT
[ENA]
¡û
>WENV183492913
OMGI01001879
[OMGI] human gut metagenome; human gut
8524
8449
-
Thr
GGT
[ENA]
¡û
>WENV183501391
OMGS01000147
[OMGS] human gut metagenome; human gut
31020
31095
+
Thr
GGT
[ENA]
¡û
>WENV183505785
OMGX01035905
[OMGX] human gut metagenome; human gut
738
663
-
Thr
GGT
[ENA]
¡û
>WENV183540060
OOAJ01002041
[OOAJ] human gut metagenome; human gut
7350
7275
-
Thr
GGT
[ENA]
¡û
>WENV183545346
OOAQ01002093
[OOAQ] human gut metagenome; human gut
10320
10395
+
Thr
GGT
[ENA]
¡û
>WENV183574063
OOCH01002280
[OOCH] human gut metagenome; human gut
9183
9258
+
Thr
GGT
[ENA]
¡û
>WENV183574904
OOCI01000107
[OOCI] human gut metagenome; human gut
41549
41474
-
Thr
GGT
[ENA]
¡û
>WENV183580045
OOCM01013601
[OOCM] human gut metagenome; human gut
2412
2337
-
Thr
GGT
[ENA]
¡û
>WENV183580046
OOCM01013601
[OOCM] human gut metagenome; human gut
2272
2197
-
Thr
GGT
[ENA]
¡û
>WENV183584171
OOCQ01003299
[OOCQ] human gut metagenome; human gut
3894
3969
+
Thr
GGT
[ENA]
¡û
>WENV183597838
OODF01007384
[OODF] human gut metagenome; human gut
119
194
+
Thr
GGT
[ENA]
¡û
>WENV183601181
OODJ01000400
[OODJ] human gut metagenome; human gut
25470
25545
+
Thr
GGT
[ENA]
¡û
>WENV183603864
OODL01000372
[OODL] human gut metagenome; human gut
45937
45862
-
Thr
GGT
[ENA]
¡û
>WENV183632504
OOIF01004786
[OOIF] human gut metagenome; human gut
3768
3693
-
Thr
GGT
[ENA]
¡û
>WENV183633356
OOIG01000404
[OOIG] human gut metagenome; human gut
26291
26366
+
Thr
GGT
[ENA]
¡û
>WENV183639748
OQVI01052863
[OQVI] human gut metagenome; human gut
376
301
-
Thr
GGT
[ENA]
¡û
>WENV183776177
PPYF01084963
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1001
1076
+
Thr
GGT
[ENA]
¡û
>WENV183788962
PPYF01372022
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1376
1451
+
Thr
GGT
[ENA]
¡û
>WENV170059122
CDZH01034522
[CDZH] gut metagenome; human stools
14819
14894
+
Thr
GGT
[ENA]
¡û
>WENV170061022
CDZI01030685
[CDZI] gut metagenome; human stools
1079
1004
-
Thr
GGT
[ENA]
¡û
>WENV170075839
CDZT01047759
[CDZT] gut metagenome; human stools
124
199
+
Thr
GGT
[ENA]
¡û
>WENV170077092
CDZU01021372
[CDZU] gut metagenome; human stools
2
77
+
Thr
GGT
[ENA]
¡û
>WENV170077269
CDZU01026884
[CDZU] gut metagenome; human stools
77
2
-
Thr
GGT
[ENA]
¡û
>WENV170078963
CDZV01044700
[CDZV] gut metagenome; human stools
2
77
+
Thr
GGT
[ENA]
¡û
>WENV170078964
CDZV01044700
[CDZV] gut metagenome; human stools
142
217
+
Thr
GGT
[ENA]
¡û
>WENV170091068
CEAF01069625
[CEAF] gut metagenome; human stools
116
191
+
Thr
GGT
[ENA]
¡û
>WENV170715746
LQAB01013475
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
7848
7923
+
Thr
GGT
[ENA]
¡û
>W09112387
ABXU01000076
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
34504
34429
-
Thr
GGT
[ENA]
¡û
>W09112388
ABXU01000076
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
34364
34289
-
Thr
GGT
[ENA]
¡û
>C191149719
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
927631
927556
-
Thr
GGT
-
¡û
>W1810792954
QRJJ01000022
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
154
79
-
Thr
GGT
[ENA]
¡û
>W2010259511
CABJEL020000022
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CABJEL]
154
79
-
Thr
GGT
[ENA]
¡û
>W2010262318
CABKMQ020000002
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CABKMQ]
457593
457518
-
Thr
GGT
[ENA]
¡û
>W2010264039
CABKOD020000039
Thermodesulfobacteriota
Desulfovibrio piger [CABKOD]
891168
891093
-
Thr
GGT
[ENA]
¡û
>W2010264040
CABKOD020000039
Thermodesulfobacteriota
Desulfovibrio piger [CABKOD]
891028
890953
-
Thr
GGT
[ENA]
¡û
>W2010492386
JAAKEJ010000007
Thermodesulfobacteriota
Desulfovibrio sp. ZJ209 [JAAKEJ]
31534
31459
-
Thr
GGT
[ENA]
¡û
>W2010492430
JAAKEK010000007
Thermodesulfobacteriota
Desulfovibrio sp. ZJ746 [JAAKEK]
148172
148247
+
Thr
GGT
[ENA]
¡û
>W2011483456
RQYH01000035
Thermodesulfobacteriota
Desulfovibrio sp. OH1186_COT-070 [RQYH]
23864
23939
+
Thr
GGT
[ENA]
¡û
>W2011483624
RQYK01000035
Thermodesulfobacteriota
Desulfovibrio sp. OH1209_COT-279 [RQYK]
23864
23939
+
Thr
GGT
[ENA]
¡û
>W2011602901
SIXC01000001
Thermodesulfobacteriota
Desulfovibrio legallii H1T [SIXC]
30558
30633
+
Thr
GGT
[ENA]
¡û
>W2110127232
CAJTFO010000002
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CAJTFO]
217304
217229
-
Thr
GGT
[ENA]
¡û
>W2110225118
JACJLW010000007
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
58714
58789
+
Thr
GGT
[ENA]
¡û
>W2110225119
JACJLW010000007
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
58854
58929
+
Thr
GGT
[ENA]
¡û
>W2110225244
JACJLY010000004
Thermodesulfobacteriota
Desulfovibrio piger An401 [JACJLY]
38196
38121
-
Thr
GGT
[ENA]
¡û
>W2110225245
JACJLY010000004
Thermodesulfobacteriota
Desulfovibrio piger An401 [JACJLY]
38056
37981
-
Thr
GGT
[ENA]
¡û
>W10111721
ADDR01000198
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
1304
1379
+
Thr
GGT
[ENA]
¡û
>C241390213
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
17354
17429
+
Thr
GGT
-
¡û
>C241390214
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
17494
17569
+
Thr
GGT
-
¡û
>W2310016752
BQNH01000001
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CE91-St38 [BQNH]
3247747
3247672
-
Thr
GGT
[ENA]
¡û
>W11107002
ACWM01000025
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
28118
28043
-
Thr
GGT
[ENA]
¡û
>W11114648
ADDR01000198
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
1304
1379
+
Thr
GGT
[ENA]
¡û
>C161068981
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
2372954
2373029
+
Thr
GGT
[Ensembl]
¡û
>WENV083935
BAAY01019494
Gut microbiome of Human (healthy human sample F2-W, Adult, Female)
480
555
+
Thr
GGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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