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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270475 (17 seq.)
>W131036338
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
1058470
1058395
-
Val
TAC
[ENA]
¡û
>C171000039
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
4982447
4982522
+
Val
TAC
-
¡û
>C171000102
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
4982447
4982522
+
Val
TAC
-
¡û
>C181004864
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
1875510
1875438
-
Val
TAC
-
¡û
>W2110226234
JACJNW010000006
Cyanobacteriota
Cyanobacteria bacterium FACHB-DQ100 [JACJNW]
129469
129397
-
Val
TAC
[ENA]
¡û
>W2110226285
JACJNX010000045
Cyanobacteriota
Cyanobacteria bacterium FACHB-63 [JACJNX]
14572
14644
+
Val
TAC
[ENA]
¡û
>W2110226676
JACJOE010000004
Cyanobacteriota
Leptolyngbya sp. FACHB-1624 [JACJOE]
190529
190457
-
Val
TAC
[ENA]
¡û
>W2110228509
JACJPM010000018
Cyanobacteriota
Leptolyngbya sp. FACHB-17 [JACJPM]
14539
14611
+
Val
TAC
[ENA]
¡û
>W2110230977
JACJRK010000001
Cyanobacteriota
Leptolyngbya sp. FACHB-161 [JACJRK]
498766
498694
-
Val
TAC
[ENA]
¡û
>W2110231034
JACJRL010000001
Cyanobacteriota
Leptolyngbya sp. FACHB-402 [JACJRL]
498760
498688
-
Val
TAC
[ENA]
¡û
>W2110231091
JACJRM010000001
Cyanobacteriota
Leptolyngbya sp. FACHB-239 [JACJRM]
498760
498688
-
Val
TAC
[ENA]
¡û
>W2110231148
JACJRN010000001
Cyanobacteriota
Leptolyngbya sp. FACHB-238 [JACJRN]
498760
498688
-
Val
TAC
[ENA]
¡û
>W2110313029
JADEXW010000625
Cyanobacteriota
Pseudanabaenaceae cyanobacterium LEGE 13415 [JADEXW]
1019
1091
+
Val
TAC
[ENA]
¡û
>C231316373
CP092419
Cyanobacteriota
Leptolyngbya boryana IU 594 [CP092419]
1878396
1878324
-
Val
TAC
-
¡û
>C161002697
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
2608364
2608292
-
Val
TAC
[Ensembl]
¡û
>W1610057122
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
4139218
4139146
-
Val
TAC
[ENA]
¡û
>W1710053821
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
4139218
4139146
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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