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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270620 (114 seq.)
>W131195457
ASSQ01000011
Bacteroidota
Parabacteroides goldsteinii dnLKV18 [ASSQ]
10322
10395
+
Lys
CTT
[ENA]
¡û
>W131195458
ASSQ01000011
Bacteroidota
Parabacteroides goldsteinii dnLKV18 [ASSQ]
10414
10489
+
Lys
CTT
[ENA]
¡û
>W131221129
AUAE01000044
Bacteroidota
Parabacteroides gordonii DSM 23371 [AUAE]
8855
8780
-
Lys
CTT
[ENA]
¡û
>W1711502919
MKTD01000052
Bacteroidota
Bacteroidia bacterium 43-41 [MKTD]
38438
38365
-
Lys
CTT
[ENA]
¡û
>W131144998
AQFV01000001
Bacteroidota
Parabacteroides sp. ASF519 [AQFV]
22390
22465
+
Lys
CTT
[ENA]
¡û
>W141008378
AGZO01000014
Bacteroidota
Parabacteroides goldsteinii CL02T12C30 [AGZO]
137798
137723
-
Lys
CTT
[ENA]
¡û
>WENV180172048
OAVX01000201
[OAVX] human gut metagenome; faeces
45586
45661
+
Lys
CTT
[ENA]
¡û
>WENV180577688
OCMA01173857
[OCMA] human gut metagenome; human gut
74
1
-
Lys
CTT
[ENA]
¡û
>WENV180612219
OCPX01000729
[OCPX] human gut metagenome; human gut
8526
8599
+
Lys
CTT
[ENA]
¡û
>WENV180627408
OCQM01169970
[OCQM] human gut metagenome; human gut
74
147
+
Lys
CTT
[ENA]
¡û
>WENV180827774
ODKA01001014
[ODKA] human metagenome; G_DNA_Stool
19793
19720
-
Lys
CTT
[ENA]
¡û
>WENV181030517
ODXJ01000174
[ODXJ] human metagenome; G_DNA_Stool
6237
6310
+
Lys
CTT
[ENA]
¡û
>WENV181072139
OEAN01000683
[OEAN] human metagenome; G_DNA_Stool
8553
8626
+
Lys
CTT
[ENA]
¡û
>WENV181242602
OFFG01000912
[OFFG] mouse gut metagenome; faeces
7009
7082
+
Lys
CTT
[ENA]
¡û
>WENV181246033
OFFJ01006942
[OFFJ] mouse gut metagenome; faeces
2821
2894
+
Lys
CTT
[ENA]
¡û
>WENV181274124
OFGH01063215
[OFGH] mouse gut metagenome; faeces
12
85
+
Lys
CTT
[ENA]
¡û
>WENV181274853
OFGI01009243
[OFGI] mouse gut metagenome; faeces
66
139
+
Lys
CTT
[ENA]
¡û
>WENV181457683
OGEI01005525
[OGEI] metagenome; Human gut stool
86
159
+
Lys
CTT
[ENA]
¡û
>WENV181460950
OGEM01000071
[OGEM] metagenome; Human gut stool
8180
8253
+
Lys
CTT
[ENA]
¡û
>WENV181485463
OGFM01003094
[OGFM] metagenome; Human gut stool
74
147
+
Lys
CTT
[ENA]
¡û
>WENV181508706
OGGQ01001213
[OGGQ] metagenome; Human gut stool
28355
28282
-
Lys
CTT
[ENA]
¡û
>WENV181537151
OGHW01002582
[OGHW] metagenome; Human gut stool
1846
1773
-
Lys
CTT
[ENA]
¡û
>WENV181560645
OGJC01000864
[OGJC] metagenome; Human gut stool
8429
8502
+
Lys
CTT
[ENA]
¡û
>WENV181578475
OGJY01001691
[OGJY] metagenome; Human gut stool
9114
9041
-
Lys
CTT
[ENA]
¡û
>WENV181578883
OGJY01007524
[OGJY] metagenome; Human gut stool
5469
5542
+
Lys
CTT
[ENA]
¡û
>WENV181635256
OGMX01000685
[OGMX] metagenome; Human gut stool
74
147
+
Lys
CTT
[ENA]
¡û
>WENV181655071
OGOA01005063
[OGOA] metagenome; Human gut stool
255
182
-
Lys
CTT
[ENA]
¡û
>WENV181655072
OGOA01005063
[OGOA] metagenome; Human gut stool
163
90
-
Lys
CTT
[ENA]
¡û
>WENV181664919
OGOI01053874
[OGOI] human gut metagenome; faeces
471
398
-
Lys
CTT
[ENA]
¡û
>WENV181692532
OGPA01000261
[OGPA] human gut metagenome; faeces
6094
6021
-
Lys
CTT
[ENA]
¡û
>WENV181721361
OGPV01001431
[OGPV] human gut metagenome; faeces
8154
8227
+
Lys
CTT
[ENA]
¡û
>WENV181789421
OGRO01017227
[OGRO] human gut metagenome; faeces
796
723
-
Lys
CTT
[ENA]
¡û
>WENV181795893
OGRT01001587
[OGRT] human gut metagenome; faeces
7601
7676
+
Lys
CTT
[ENA]
¡û
>WENV181799173
OGRY01000164
[OGRY] human gut metagenome; faeces
51228
51155
-
Lys
CTT
[ENA]
¡û
>WENV181898253
OGXT01003148
[OGXT] human gut metagenome; faeces
94
167
+
Lys
CTT
[ENA]
¡û
>WENV181908797
OGYB01000823
[OGYB] human gut metagenome; faeces
8273
8346
+
Lys
CTT
[ENA]
¡û
>WENV181915401
OGYF01006156
[OGYF] human gut metagenome; faeces
6299
6226
-
Lys
CTT
[ENA]
¡û
>WENV181991665
OHAQ01004416
[OHAQ] human gut metagenome; faeces
1805
1732
-
Lys
CTT
[ENA]
¡û
>WENV182031219
OHCS01005792
[OHCS] human gut metagenome; feces
3078
3005
-
Lys
CTT
[ENA]
¡û
>WENV182065543
OHFA01009015
[OHFA] human gut metagenome; feces
1382
1455
+
Lys
CTT
[ENA]
¡û
>WENV182180566
OHNO01002768
[OHNO] human gut metagenome; feces
5109
5182
+
Lys
CTT
[ENA]
¡û
>WENV182208827
OHPY01002694
[OHPY] human gut metagenome; feces
1971
2044
+
Lys
CTT
[ENA]
¡û
>WENV182212887
OHQG01013379
[OHQG] human gut metagenome; feces
111
38
-
Lys
CTT
[ENA]
¡û
>WENV182251286
OHST01018182
[OHST] human gut metagenome; feces
745
818
+
Lys
CTT
[ENA]
¡û
>WENV182523429
OIWS01011061
[OIWS] human gut metagenome; faeces
7
82
+
Lys
CTT
[ENA]
¡û
>WENV182885403
OKSC01006464
[OKSC] human gut metagenome; faeces
5636
5709
+
Lys
CTT
[ENA]
¡û
>WENV183039097
OLGB01003058
[OLGB] human gut metagenome; faeces
7469
7542
+
Lys
CTT
[ENA]
¡û
>WENV183072275
OLIT01000712
[OLIT] human gut metagenome; feces
23535
23608
+
Lys
CTT
[ENA]
¡û
>WENV183145070
OLOL01028768
[OLOL] human gut metagenome; faeces
186
259
+
Lys
CTT
[ENA]
¡û
>WENV183330741
OLWB01019797
[OLWB] human gut metagenome; faeces
1301
1374
+
Lys
CTT
[ENA]
¡û
>WENV183489015
OMFZ01032616
[OMFZ] human gut metagenome; feces
543
616
+
Lys
CTT
[ENA]
¡û
>WENV183565014
OOBZ01001344
[OOBZ] human gut metagenome; human gut
7581
7654
+
Lys
CTT
[ENA]
¡û
>WENV183754022
PPYE01079825
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1882
1955
+
Lys
CTT
[ENA]
¡û
>WENV183787305
PPYF01320296
[PPYF] human gut metagenome; stool from patient with Crohn's disease
93
166
+
Lys
CTT
[ENA]
¡û
>W09114858
ABZY01000053
Bacteroidota
Parabacteroides sp. 2_1_7 2_1_7 [ABZY]
85507
85434
-
Lys
CTT
[ENA]
¡û
>W1910279813
FQSE01000010
Bacteroidota
Parabacteroides timonensis Marseille-P3236 [FQSE]
62880
62953
+
Lys
CTT
[ENA]
¡û
>W1910503397
FYCK01000002
Bacteroidota
Parabacteroides bouchesdurhonensis Marseille-P3763 [FYCK]
41855
41928
+
Lys
CTT
[ENA]
¡û
>W1911728552
QTMM01000031
Bacteroidota
Parabacteroides sp. AF17-3 [QTMM]
8912
8839
-
Lys
CTT
[ENA]
¡û
>W1810797908
QRMU01000005
Bacteroidota
Bacteroides sp. AM07-16 [QRMU]
234529
234456
-
Lys
CTT
[ENA]
¡û
>W1810818990
QSDP01000128
Bacteroidota
Parabacteroides sp. AM58-2XD [QSDP]
9233
9160
-
Lys
CTT
[ENA]
¡û
>W1810917782
QWDE01000001
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
646550
646477
-
Lys
CTT
[ENA]
¡û
>W2010258617
CABJDU020000005
Bacteroidota
Parabacteroides bouchesdurhonensis [CABJDU]
234529
234456
-
Lys
CTT
[ENA]
¡û
>W2010278924
CABMFI010000005
Bacteroidota
Parabacteroides gordonii [CABMFI]
8553
8480
-
Lys
CTT
[ENA]
¡û
>W2010393497
FQSE01000010
Bacteroidota
Parabacteroides timonensis Marseille-P3236 [FQSE]
62880
62953
+
Lys
CTT
[ENA]
¡û
>W2010423086
FYCK01000002
Bacteroidota
Parabacteroides bouchesdurhonensis Marseille-P3763 [FYCK]
41855
41928
+
Lys
CTT
[ENA]
¡û
>W2011294005
QTMM01000031
Bacteroidota
Parabacteroides sp. AF17-3 [QTMM]
8912
8839
-
Lys
CTT
[ENA]
¡û
>W2011319237
QWKD01000224
Bacteroidota
Parabacteroides goldsteinii 526-21 [QWKD]
7526
7599
+
Lys
CTT
[ENA]
¡û
>W2011367164
RAZN01000061
Bacteroidota
Parabacteroides goldsteinii 0.1X-D42-15 [RAZN]
8907
8834
-
Lys
CTT
[ENA]
¡û
>W2011666629
SOZE01000020
Bacteroidota
Mucilaginibacter psychrotolerans NH7-4 [SOZE]
17563
17637
+
Lys
CTT
[ENA]
¡û
>W2011673026
SPPR01000054
Bacteroidota
Parabacteroides sp. P14 [SPPR]
9269
9196
-
Lys
CTT
[ENA]
¡û
>W2011956208
UYXJ01000001
Bacteroidota
Parabacteroides goldsteinii DSM 19448 = WAL 12034 [UYXJ]
3763523
3763450
-
Lys
CTT
[ENA]
¡û
>W2011956542
UYXO01000034
Bacteroidota
Parabacteroides goldsteinii DSM 19448 = WAL 12034 [UYXO]
54452
54527
+
Lys
CTT
[ENA]
¡û
>W2012040740
VIQW01000051
Bacteroidota
Parabacteroides goldsteinii MD072 [VIQW]
26035
25962
-
Lys
CTT
[ENA]
¡û
>W2012359263
WKLJ01000067
Bacteroidota
Parabacteroides goldsteinii BIOML-A11 [WKLJ]
8496
8569
+
Lys
CTT
[ENA]
¡û
>W2012359318
WKLK01000067
Bacteroidota
Parabacteroides goldsteinii BIOML-A10 [WKLK]
8496
8569
+
Lys
CTT
[ENA]
¡û
>W2012359380
WKLL01000064
Bacteroidota
Parabacteroides goldsteinii BIOML-A9 [WKLL]
8913
8840
-
Lys
CTT
[ENA]
¡û
>W2012359423
WKLM01000043
Bacteroidota
Parabacteroides goldsteinii BIOML-A7 [WKLM]
7883
7956
+
Lys
CTT
[ENA]
¡û
>W2012359483
WKLN01000070
Bacteroidota
Parabacteroides goldsteinii BIOML-A6 [WKLN]
8913
8840
-
Lys
CTT
[ENA]
¡û
>W2012359548
WKLO01000072
Bacteroidota
Parabacteroides goldsteinii BIOML-A5 [WKLO]
8913
8840
-
Lys
CTT
[ENA]
¡û
>W2012359606
WKLP01000063
Bacteroidota
Parabacteroides goldsteinii BIOML-A4 [WKLP]
7883
7956
+
Lys
CTT
[ENA]
¡û
>W2012359668
WKLQ01000071
Bacteroidota
Parabacteroides goldsteinii BIOML-A3 [WKLQ]
7883
7956
+
Lys
CTT
[ENA]
¡û
>W2012359730
WKLR01000065
Bacteroidota
Parabacteroides goldsteinii BIOML-A2 [WKLR]
7776
7849
+
Lys
CTT
[ENA]
¡û
>W2012359793
WKLS01000061
Bacteroidota
Parabacteroides goldsteinii BIOML-A1 [WKLS]
7743
7816
+
Lys
CTT
[ENA]
¡û
>W2110121631
CAJSYT010000004
Bacteroidota
Parabacteroides goldsteinii [CAJSYT]
334213
334140
-
Lys
CTT
[ENA]
¡û
>W2110244227
JACOOI010000068
Bacteroidota
Parabacteroides sp. BX2 [JACOOI]
4545
4618
+
Lys
CTT
[ENA]
¡û
>W2110244277
JACOOJ010000026
Bacteroidota
Parabacteroides sp. N37 [JACOOJ]
53048
52975
-
Lys
CTT
[ENA]
¡û
>W2110281281
JACWMX010000001
Bacteroidota
Mucilaginibacter glaciei ZB1P21 [JACWMX]
1008297
1008224
-
Lys
CTT
[ENA]
¡û
>W2110315485
JADFFL010000007
Bacteroidota
Mucilaginibacter myungsuensis KCTC 22746 [JADFFL]
238226
238153
-
Lys
CTT
[ENA]
¡û
>W2110317045
JADGKT010000054
Bacteroidota
Parabacteroides goldsteinii 19428wG3_P14 [JADGKT]
9269
9196
-
Lys
CTT
[ENA]
¡û
>W2110347618
JADNBB010000010
Bacteroidota
Parabacteroides goldsteinii 1001217B_150727_C5 [JADNBB]
182533
182606
+
Lys
CTT
[ENA]
¡û
>W2110349159
JADNDF010000041
Bacteroidota
Parabacteroides goldsteinii D55t1_190419_C9 [JADNDF]
10251
10324
+
Lys
CTT
[ENA]
¡û
>W2110356623
JADNNP010000040
Bacteroidota
Parabacteroides goldsteinii 1001713B170207_170306_B11 [JADNNP]
9037
8964
-
Lys
CTT
[ENA]
¡û
>C201250722
CP051672
Bacteroidota
Parabacteroides distasonis CBBP-1 [CP051672]
1840477
1840404
-
Lys
CTT
-
¡û
>C201276308
CP054139
Bacteroidota
Mucilaginibacter sp. G2-14 [CP054139]
1676692
1676766
+
Lys
CTT
-
¡û
>C211191109
CP064353
Bacteroidota
Parabacteroides goldsteinii MTS01 [CP064353]
1078917
1078844
-
Lys
CTT
-
¡û
>W2110708599
JAIWZF010000002
Bacteroidota
Parabacteroides gordonii FDAARGOS_1522 [JAIWZF]
47743
47816
+
Lys
CTT
[ENA]
¡û
>W2110708600
JAIWZF010000002
Bacteroidota
Parabacteroides gordonii FDAARGOS_1522 [JAIWZF]
47840
47913
+
Lys
CTT
[ENA]
¡û
>C211304819
CP072254
Bacteroidota
Parabacteroides distasonis CL03T12C09 [CP072254]
2977034
2976961
-
Lys
CTT
-
¡û
>C211390116
CP081906
Bacteroidota
Parabacteroides goldsteinii BFG-241 [CP081906]
1217962
1217889
-
Lys
CTT
-
¡û
>W10110816
ADCJ01000021
Bacteroidota
Bacteroides sp. 3_1_19 [ADCJ]
131587
131660
+
Lys
CTT
[ENA]
¡û
>C231218479
CP085944
Bacteroidota
Parabacteroides distasonis FDAARGOS_1565 [CP085944]
1878389
1878316
-
Lys
CTT
-
¡û
>C231465565
CP103148
Bacteroidota
Parabacteroides distasonis BFG-149 [CP103148]
637752
637825
+
Lys
CTT
-
¡û
>C231465967
CP103176
Bacteroidota
Parabacteroides distasonis BFG-303 [CP103176]
546174
546247
+
Lys
CTT
-
¡û
>C231627484
CP120353
Bacteroidota
Parabacteroides distasonis F1-28 [CP120353]
578362
578435
+
Lys
CTT
-
¡û
>W2310016624
BQNC01000002
Bacteroidota
Parabacteroides goldsteinii CE91-St1 [BQNC]
636458
636385
-
Lys
CTT
[ENA]
¡û
>W11113253
ADCJ01000021
Bacteroidota
Bacteroides sp. 3_1_19 [ADCJ]
131587
131660
+
Lys
CTT
[ENA]
¡û
>W1511682227
LFJV01000054
Bacteroidota
Parabacteroides goldsteinii 910340 [LFJV]
9129
9054
-
Lys
CTT
[ENA]
¡û
>W1610004009
AGES01000003
Bacteroidota
Parabacteroides sp. HGS0025 [AGES]
84367
84292
-
Lys
CTT
[ENA]
¡û
>W1610018347
AQHV01000014
Bacteroidota
Parabacteroides goldsteinii DSM 19448 = WAL 12034 [AQHV]
327329
327254
-
Lys
CTT
[ENA]
¡û
>W1610018425
AQHW01000033
Bacteroidota
Parabacteroides gordonii MS-1 [AQHW]
8080
8155
+
Lys
CTT
[ENA]
¡û
>WENV084775
BABA01013589
Gut microbiome of Human (healthy human sample F2-Y, Child, Female)
870
793
-
Lys
CTT
[ENA]
>W1710004518
AGES01000003
Bacteroidota
Parabacteroides sp. HGS0025 [AGES]
84367
84292
-
Lys
CTT
[ENA]
¡û
>W1710015257
AQHV01000014
Bacteroidota
Parabacteroides goldsteinii DSM 19448 = WAL 12034 [AQHV]
327329
327254
-
Lys
CTT
[ENA]
¡û
>W1710015335
AQHW01000033
Bacteroidota
Parabacteroides gordonii MS-1 [AQHW]
8080
8155
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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