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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270645 (49 seq.)
>W1711413766
MGWU01000149
Betaproteobacteria
Gallionellales bacterium RBG_16_56_9 [MGWU]
2455
2530
+
Thr
TGT
[ENA]
¡û
>C171083804
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
188819
188894
+
Thr
TGT
-
¡û
>C171094216
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
126043
126118
+
Thr
TGT
-
¡û
>WENV180110826
OAPN01008434
[OAPN] marine metagenome; 2011
96
21
-
Thr
TGT
[ENA]
¡û
>WENV180678425
OCVV011976743
[OCVV] gut metagenome; gut
251
176
-
Thr
TGT
[ENA]
¡û
>WENV180678426
OCVV011976743
[OCVV] gut metagenome; gut
251
176
-
Thr
TGT
[ENA]
¡û
>WENV180829694
ODKA01326444
[ODKA] human metagenome; G_DNA_Stool
102
177
+
Thr
TGT
[ENA]
¡û
>WENV180851329
ODKV01054265
[ODKV] human metagenome; G_DNA_Stool
711
636
-
Thr
TGT
[ENA]
¡û
>WENV181452107
OGDY01086658
[OGDY] metagenome; Human gut stool
433
358
-
Thr
TGT
[ENA]
¡û
>WENV181469082
OGES01048424
[OGES] metagenome; Human gut stool
466
391
-
Thr
TGT
[ENA]
¡û
>WENV181883033
OGXI01001329
[OGXI] human gut metagenome; faeces
20137
20062
-
Thr
TGT
[ENA]
¡û
>WENV181902551
OGXW01041001
[OGXW] human gut metagenome; faeces
244
319
+
Thr
TGT
[ENA]
¡û
>WENV181929121
OGYO01011164
[OGYO] human gut metagenome; faeces
359
434
+
Thr
TGT
[ENA]
¡û
>WENV181973336
OHAA01029012
[OHAA] human gut metagenome; faeces
686
761
+
Thr
TGT
[ENA]
¡û
>WENV181992211
OHAQ01026572
[OHAQ] human gut metagenome; faeces
1529
1454
-
Thr
TGT
[ENA]
¡û
>WENV182885961
OKSC01053891
[OKSC] human gut metagenome; faeces
740
665
-
Thr
TGT
[ENA]
¡û
>WENV182969709
OKXB01060996
[OKXB] human gut metagenome; human gut
404
329
-
Thr
TGT
[ENA]
¡û
>WENV183086389
OLJF01036535
[OLJF] metagenome; faeces
216
291
+
Thr
TGT
[ENA]
¡û
>WENV183326867
OLVZ01078752
[OLVZ] human gut metagenome; faeces
122
47
-
Thr
TGT
[ENA]
¡û
>WENV183575771
OOCI01007677
[OOCI] human gut metagenome; human gut
3297
3222
-
Thr
TGT
[ENA]
¡û
>WENV183733302
PJTY01000766
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
10345
10420
+
Thr
TGT
[ENA]
¡û
>WENV183734648
PJTZ01030427
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
22
97
+
Thr
TGT
[ENA]
¡û
>WENV183739147
PJUE01002301
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2007
1932
-
Thr
TGT
[ENA]
¡û
>WENV170069629
CDZP01050361
[CDZP] gut metagenome; human stools
686
761
+
Thr
TGT
[ENA]
¡û
>WENV170071473
CDZQ01057864
[CDZQ] gut metagenome; human stools
3856
3931
+
Thr
TGT
[ENA]
¡û
>WENV170109126
CECA01063295
[CECA] gut metagenome; human stools
792
717
-
Thr
TGT
[ENA]
¡û
>W09119221
ACDP01000050
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
24396
24321
-
Thr
TGT
[ENA]
¡û
>W09119271
ACDQ01000017
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
24341
24266
-
Thr
TGT
[ENA]
¡û
>W1910700106
MESE01000104
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
31278
31203
-
Thr
TGT
[ENA]
¡û
>W2010264355
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
2236387
2236312
-
Thr
TGT
[ENA]
¡û
>W2010288949
CABMNL010000001
Betaproteobacteria
Oxalobacter formigenes [CABMNL]
2206821
2206746
-
Thr
TGT
[ENA]
¡û
>W2010833532
MESE01000104
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
31278
31203
-
Thr
TGT
[ENA]
¡û
>W2110018746
BMCG01000003
Betaproteobacteria
Oxalicibacterium flavum CCM 7086 [BMCG]
50561
50636
+
Thr
TGT
[ENA]
¡û
>W2110020097
BMDI01000002
Betaproteobacteria
Oxalicibacterium faecigallinarum CCM 2767 [BMDI]
104297
104372
+
Thr
TGT
[ENA]
¡û
>W2110020296
BMDP01000001
Betaproteobacteria
Oxalicibacterium solurbis CCM 7664 [BMDP]
1118466
1118391
-
Thr
TGT
[ENA]
¡û
>W2110289249
JACYOX010000026
Betaproteobacteria
Noviherbaspirillum soli SUEMI10 [JACYOX]
44128
44053
-
Thr
TGT
[ENA]
¡û
>W2110437945
JAEPBG010000001
Betaproteobacteria
Noviherbaspirillum pedocola DKR-6 [JAEPBG]
890818
890743
-
Thr
TGT
[ENA]
¡û
>W2110638107
JAHQRJ010000001
Betaproteobacteria
Noviherbaspirillum sp. L7-7A [JAHQRJ]
3870686
3870761
+
Thr
TGT
[ENA]
¡û
>C201107565
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
97671
97596
-
Thr
TGT
-
¡û
>C231399270
CP098242
Betaproteobacteria
Oxalobacter vibrioformis WoOx3 [CP098242]
1436218
1436143
-
Thr
TGT
-
¡û
>C231399353
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
2179640
2179565
-
Thr
TGT
-
¡û
>C231399381
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
376995
377070
+
Thr
TGT
-
¡û
>C231399425
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
193766
193841
+
Thr
TGT
-
¡û
>C231399494
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
2108735
2108660
-
Thr
TGT
-
¡û
>C231399546
CP098248
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-1 [CP098248]
2250264
2250339
+
Thr
TGT
-
¡û
>C231399593
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
2072899
2072824
-
Thr
TGT
-
¡û
>C231399622
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
312833
312908
+
Thr
TGT
-
¡û
>C231399671
CP098251
Betaproteobacteria
Oxalobacter sp. JAC-2022 OxK [CP098251]
202614
202689
+
Thr
TGT
-
¡û
>C231399721
CP098252
Betaproteobacteria
Oxalobacter sp. JAC-2022 Va3 [CP098252]
141412
141487
+
Thr
TGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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