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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270709 (66 seq.)
>W1711074695
LSJT01000110
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
1492
1567
+
Lys
TTT
[ENA]
¡û
>W131221674
AUAQ01000018
Actinomycetota
Corynebacterium freiburgense DSM 45254 [AUAQ]
51871
51944
+
Lys
TTT
[ENA]
¡û
>W1711492009
MKKB01000011
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
42134
42059
-
Lys
TTT
[ENA]
¡û
>W1711494759
MKMB01001025
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Javiana [MKMB]
263
338
+
Lys
TTT
[ENA]
¡û
>W1711664264
MQVT01000020
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
31729
31654
-
Lys
TTT
[ENA]
¡û
>W1711664295
MQVU01000003
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
115830
115755
-
Lys
TTT
[ENA]
¡û
>C171022203
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
285710
285785
+
Lys
TTT
-
¡û
>WENV180291460
OBIV01063226
[OBIV] soil metagenome; Clay
353
278
-
Lys
TTT
[ENA]
¡û
>WENV180690487
OCZS010008306
[OCZS] soil metagenome; soil
3
76
+
Lys
TTT
[ENA]
¡û
>W141242987
CAJB01000057
Actinomycetota
Tetrasphaera japonica T1-X7 [CAJB]
1498
1571
+
Lys
TTT
[ENA]
¡û
>WENV183708986
PDWI01022336
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1
75
+
Lys
TTT
[ENA]
¡û
>WENV183713632
PDWI01146077
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2110
2184
+
Lys
TTT
[ENA]
¡û
>WENV183718514
PDWJ01004540
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9259
9333
+
Lys
TTT
[ENA]
¡û
>W09109310
ABUD01000009
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
43068
43143
+
Lys
TTT
[ENA]
¡û
>W1911498437
OCTS01000003
Actinomycetota
Corynebacterium sp. Marseille-P4122 [OCTS]
13510
13436
-
Lys
TTT
[ENA]
¡û
>W1911752300
QWLM01000008
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
20932
21006
+
Lys
TTT
[ENA]
¡û
>W1810365476
PVUE01000005
Actinomycetota
Antricoccus suffuscus DSM 100065 [PVUE]
70712
70639
-
Lys
TTT
[ENA]
¡û
>C151039203
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
2568343
2568268
-
Lys
TTT
[Ensembl]
¡û
>C151077144
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
1492118
1492045
-
Lys
TTT
-
¡û
>W2010520550
JAANCN010000002
Actinomycetota
Phycicoccus endophyticus IP6SC6 [JAANCN]
40581
40656
+
Lys
TTT
[ENA]
¡û
>W2010521465
JAANNA010000003
Actinomycetota
Dermacoccus nishinomiyaensis IC4_133 [JAANNA]
204269
204344
+
Lys
TTT
[ENA]
¡û
>W2010668688
JACBZS010000001
Actinomycetota
Naumannella cuiyingiana DSM 103164 [JACBZS]
1311064
1310991
-
Lys
TTT
[ENA]
¡û
>W2011159341
OCTS01000003
Actinomycetota
Corynebacterium sp. Marseille-P4122 [OCTS]
13510
13436
-
Lys
TTT
[ENA]
¡û
>W2011169396
OMPO01000001
Actinomycetota
Blastococcus sp. Marseille-P5729 [OMPO]
1154113
1154040
-
Lys
TTT
[ENA]
¡û
>W2011320545
QWLM01000008
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
20932
21006
+
Lys
TTT
[ENA]
¡û
>W2011432174
RJJQ01000004
Actinomycetota
Flexivirga sp. BO-16 [RJJQ]
8873
8800
-
Lys
TTT
[ENA]
¡û
>W2011554030
SEHL01000005
Actinomycetota
Dermacoccus sp. 147Ba [SEHL]
253122
253197
+
Lys
TTT
[ENA]
¡û
>W2011633547
SMFS01000001
Actinomycetota
Dermacoccus sp. DS28 SAI-028 [SMFS]
2566130
2566055
-
Lys
TTT
[ENA]
¡û
>W2011654090
SOAW01000001
Actinomycetota
Naumannella halotolerans DSM 24323 [SOAW]
2302383
2302308
-
Lys
TTT
[ENA]
¡û
>W2011698613
SUPQ01000013
Actinomycetota
Dermacoccus nishinomiyaensis TSA37 [SUPQ]
1559
1634
+
Lys
TTT
[ENA]
¡û
>W2011821835
UFXX01000001
Actinomycetota
Dermacoccus nishinomiyaensis NCTC11039 [UFXX]
2402674
2402749
+
Lys
TTT
[ENA]
¡û
>W2011828084
UGNQ01000001
Actinomycetota
Kytococcus sedentarius NCTC11040 [UGNQ]
881928
882002
+
Lys
TTT
[ENA]
¡û
>W2011978871
VCQV01000001
Actinomycetota
Dermacoccaceae bacterium C5-26 [VCQV]
126791
126865
+
Lys
TTT
[ENA]
¡û
>W2011993743
VDZB01000003
Actinomycetota
Dermacoccus nishinomiyaensis DE0382 [VDZB]
111731
111656
-
Lys
TTT
[ENA]
¡û
>W2011996819
VECS01000002
Actinomycetota
Dermacoccus nishinomiyaensis DE0240 [VECS]
113728
113653
-
Lys
TTT
[ENA]
¡û
>W2012000333
VEFV01000003
Actinomycetota
Dermacoccus nishinomiyaensis DE0125 [VEFV]
283515
283590
+
Lys
TTT
[ENA]
¡û
>W2012017541
VFMN01000001
Actinomycetota
Lapillicoccus jejuensis DSM 18607 [VFMN]
1986618
1986544
-
Lys
TTT
[ENA]
¡û
>W2012046022
VIUW01000001
Actinomycetota
Marihabitans asiaticum DSM 18935 [VIUW]
547227
547301
+
Lys
TTT
[ENA]
¡û
>W2012047316
VIVQ01000006
Actinomycetota
Rudaeicoccus suwonensis DSM 19560 [VIVQ]
62700
62774
+
Lys
TTT
[ENA]
¡û
>W2012229076
WBKP01000002
Actinomycetota
Cumulibacter manganitolerans 2-36 [WBKP]
83214
83288
+
Lys
TTT
[ENA]
¡û
>W2012469229
WWCA01000007
Actinomycetota
Corynebacterium sp. 4HC-13 [WWCA]
7668
7595
-
Lys
TTT
[ENA]
¡û
>W2110020890
BMEA01000002
Actinomycetota
Knoellia flava CGMCC 1.10749 [BMEA]
262629
262555
-
Lys
TTT
[ENA]
¡û
>W2110032355
BMMY01000005
Actinomycetota
Phycicoccus endophyticus CGMCC 4.7300 [BMMY]
272581
272506
-
Lys
TTT
[ENA]
¡û
>W2110304828
JADCTK010000003
Actinomycetota
Dermacoccus barathri HZAU 234 [JADCTK]
199836
199762
-
Lys
TTT
[ENA]
¡û
>W2110316279
JADGIT010000004
Actinomycetota
Corynebacterium sp. ED61 [JADGIT]
278984
279058
+
Lys
TTT
[ENA]
¡û
>W2110522696
JAGEKQ010000014
Actinomycetota
Dermacoccus sp. NHGro5 [JAGEKQ]
35925
35850
-
Lys
TTT
[ENA]
¡û
>W2110573747
JAGTHU010000021
Actinomycetota
Dermacoccus sp. Tok2021 [JAGTHU]
34464
34390
-
Lys
TTT
[ENA]
¡û
>C201152006
CP045032
Actinomycetota
Corynebacterium sp. LMM-1652 [CP045032]
508160
508233
+
Lys
TTT
-
¡û
>C201196714
CP047156
Actinomycetota
Epidermidibacterium keratini EPI-7 [CP047156]
1211649
1211576
-
Lys
TTT
-
¡û
>C211068224
CP046883
Actinomycetota
Corynebacterium anserum 23H37-10 [CP046883]
466314
466387
+
Lys
TTT
-
¡û
>C211129436
CP060120
Actinomycetota
Janibacter sp. YB324 [CP060120]
268787
268861
+
Lys
TTT
-
¡û
>C211132091
CP060292
Actinomycetota
Dermacoccus sp. PAMC28757 [CP060292]
1224560
1224634
+
Lys
TTT
-
¡û
>C211137420
CP060712
Actinomycetota
Phycicoccus endophyticus JCM 31784 [CP060712]
3237398
3237323
-
Lys
TTT
-
¡û
>C211165640
CP062789
Actinomycetota
Janibacter indicus TT2 [CP062789]
277976
278050
+
Lys
TTT
-
¡û
>C211220112
CP066015
Actinomycetota
Kytococcus sedentarius FDAARGOS_1061 [CP066015]
245049
244975
-
Lys
TTT
-
¡û
>C211261704
CP069495
Actinomycetota
Kytococcus sedentarius FDAARGOS_1200 [CP069495]
422871
422797
-
Lys
TTT
-
¡û
>C231565594
CP115184
Actinomycetota
Janibacter cremeus SCSIO 52865 [CP115184]
2908214
2908287
+
Lys
TTT
-
¡û
>C231627671
CP120360
Actinomycetota
Janibacter sp. DB-40 [CP120360]
299763
299836
+
Lys
TTT
-
¡û
>C241071330
CP043031
Actinomycetota
Dermacoccus abyssi HZAU 226 [CP043031]
2416725
2416651
-
Lys
TTT
-
¡û
>C10108077
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
676448
676373
-
Lys
TTT
[Ensembl]
¡û
>W11138467
AEIQ01000098
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
57127
57052
-
Lys
TTT
[ENA]
¡û
>W1511629627
LDCM01000004
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
188966
188891
-
Lys
TTT
[ENA]
¡û
>W1610027053
AVPI01000001
Actinomycetota
Knoellia flava TL1 [AVPI]
118926
119001
+
Lys
TTT
[ENA]
¡û
>W1610914000
LSJT01000110
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
1492
1567
+
Lys
TTT
[ENA]
¡û
>W1710023218
AVPI01000001
Actinomycetota
Knoellia flava TL1 [AVPI]
118926
119001
+
Lys
TTT
[ENA]
¡û
>W1710606103
FWXN01000008
Actinomycetota
Janibacter indicus [FWXN]
155563
155488
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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