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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270757 (136 seq.)
>W1710811764
LKIU01000002
Actinomycetota
Arthrobacter sp. Edens01 [LKIU]
345487
345563
+
Met
CAT
[ENA]
¡û
>W1710875348
LMOI01000001
Actinomycetota
Arthrobacter sp. Leaf137 [LMOI]
248415
248341
-
Met
CAT
[ENA]
¡û
>W1710875504
LMOL01000005
Actinomycetota
Arthrobacter sp. Leaf141 [LMOL]
369431
369505
+
Met
CAT
[ENA]
¡û
>W1710875584
LMON01000001
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
367356
367430
+
Met
CAT
[ENA]
¡û
>W1710876283
LMPC01000007
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
52276
52202
-
Met
CAT
[ENA]
¡û
>W1710880024
LMSB01000008
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
12779
12705
-
Met
CAT
[ENA]
¡û
>W1710880279
LMSF01000029
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
473442
473516
+
Met
CAT
[ENA]
¡û
>W1710880312
LMSG01000012
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
407863
407789
-
Met
CAT
[ENA]
¡û
>W1710880355
LMSH01000002
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
493296
493372
+
Met
CAT
[ENA]
¡û
>W1710880412
LMSI01000020
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
8473
8547
+
Met
CAT
[ENA]
¡û
>W1710909417
LNQM01000001
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
439041
439115
+
Met
CAT
[ENA]
¡û
>W1710916226
LNUV01000006
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
2266705
2266631
-
Met
CAT
[ENA]
¡û
>W1710995768
LQAP01000017
Actinomycetota
Arthrobacter sp. B6 [LQAP]
373706
373632
-
Met
CAT
[ENA]
¡û
>W1711124395
LUKB01000051
Actinomycetota
Arthrobacter sp. D2 [LUKB]
206692
206616
-
Met
CAT
[ENA]
¡û
>W1711124452
LUKC01000056
Actinomycetota
Arthrobacter sp. D4 [LUKC]
206692
206616
-
Met
CAT
[ENA]
¡û
>W1711184071
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
3304772
3304698
-
Met
CAT
[ENA]
¡û
>W1711466049
MJLT01000045
Actinomycetota
Arthrobacter sp. SW1 [MJLT]
444218
444292
+
Met
CAT
[ENA]
¡û
>W1711724082
MTPV01000061
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
108031
108107
+
Met
CAT
[ENA]
¡û
>W1711768814
MVDG01000028
Actinomycetota
Arthrobacter sp. KBS0703 [MVDG]
234757
234683
-
Met
CAT
[ENA]
¡û
>W1711853251
MYFE01000589
Actinomycetota
Arthrobacter globiformis [MYFE]
806
732
-
Met
CAT
[ENA]
¡û
>W131089925
AOFD01000011
Actinomycetota
Arthrobacter nitrophenolicus SJCon [AOFD]
30034
29960
-
Met
CAT
[ENA]
¡û
>W131161270
AQXM01000053
Actinomycetota
Acaricomes phytoseiuli DSM 14247 [AQXM]
64017
63941
-
Met
CAT
[ENA]
¡û
>W131172063
ARGQ01000037
Actinomycetota
Arthrobacter sp. 135MFCol5.1 [ARGQ]
609230
609156
-
Met
CAT
[ENA]
¡û
>W131172188
ARGS01000053
Actinomycetota
Arthrobacter sp. 162MFSha1.1 [ARGS]
77363
77437
+
Met
CAT
[ENA]
¡û
>W131172222
ARGT01000025
Actinomycetota
Arthrobacter sp. 131MFCol6.1 [ARGT]
49125
49199
+
Met
CAT
[ENA]
¡û
>W131172292
ARGU01000044
Actinomycetota
Arthrobacter sp. 161MFSha2.1 [ARGU]
643078
643004
-
Met
CAT
[ENA]
¡û
>C000070
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
3296611
3296538
-
Met
CAT
[Ensembl]
¡û
>C001009
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
3416260
3416184
-
Met
CAT
[Ensembl]
¡û
>C171062221
CP017421
Actinomycetota
Arthrobacter sp. ZXY-2 [CP017421]
694465
694541
+
Met
CAT
-
¡û
>C171091987
CP019304
Actinomycetota
Arthrobacter sp. QXT-31 [CP019304]
3580330
3580404
+
Met
CAT
-
¡û
>WENV180016376
FSUT01000184
[FSUT] metagenome; soil
7
83
+
Met
CAT
[ENA]
¢þ
>WENV180018454
FSZH01000442
[FSZH] metagenome; soil
5289
5363
+
Met
CAT
[ENA]
¢þ
>WENV180019669
FTCF01000500
[FTCF] metagenome; soil
30397
30321
-
Met
CAT
[ENA]
¢þ
>W141065977
AQRI01000002
Actinomycetota
Arthrobacter sp. MA-N2 [AQRI]
647134
647058
-
Met
CAT
[ENA]
¡û
>W141106071
AVPD01000009
Actinomycetota
Arthrobacter sp. AK-YN10 [AVPD]
116553
116629
+
Met
CAT
[ENA]
¡û
>WENV181191197
OEPS010035454
[OEPS] soil metagenome; soil
654
580
-
Met
CAT
[ENA]
¢þ
>W08008062
ABKU01000022
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
41852
41778
-
Met
CAT
[ENA]
¡û
>W141213350
AZRX01000146
Actinomycetota
Arthrobacter sp. H14 [AZRX]
604
680
+
Met
CAT
[ENA]
¡û
>W141213529
AZSB01000385
Actinomycetota
Arthrobacter sp. I3 [AZSB]
560
634
+
Met
CAT
[ENA]
¡û
>W141216703
AZVC01000001
Actinomycetota
Paenarthrobacter nicotinovorans 231Sha2.1M6 [AZVC]
117363
117437
+
Met
CAT
[ENA]
¡û
>W141217127
AZVJ01000001
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
629328
629254
-
Met
CAT
[ENA]
¡û
>W141246950
CAQI01000033
Actinomycetota
Pseudarthrobacter siccitolerans [CAQI]
26227
26301
+
Met
CAT
[ENA]
¡û
>W141278885
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
1081214
1081140
-
Met
CAT
[ENA]
¡û
>WENV183676904
ORJL011683083
[ORJL] groundwater metagenome; groundwater
380
306
-
Met
CAT
[ENA]
¢þ
>C181000317
AP014718
Actinomycetota
Arthrobacter sp. Hiyo4 [AP014718]
2794171
2794097
-
Met
CAT
-
¡û
>C181064976
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
3736051
3735977
-
Met
CAT
-
¡û
>C181134223
CP026514
Actinomycetota
Arthrobacter sp. PGP41 [CP026514]
3176203
3176129
-
Met
CAT
-
¡û
>C191164617
CP039290
Actinomycetota
Arthrobacter sp. PAMC25564 [CP039290]
1483701
1483775
+
Met
CAT
-
¡û
>C191174060
CP040018
Actinomycetota
Arthrobacter sp. 24S4-2 [CP040018]
4172658
4172584
-
Met
CAT
-
¡û
>C191188219
CP041187
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502771 [CP041187]
2240364
2240439
+
Met
CAT
-
¡û
>C191188286
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
4005875
4005801
-
Met
CAT
-
¡û
>C191188538
CP041198
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502770 [CP041198]
2662824
2662749
-
Met
CAT
-
¡û
>W141565198
JIBJ01000005
Actinomycetota
Arthrobacter sp. 9MFCol3.1 [JIBJ]
191773
191849
+
Met
CAT
[ENA]
¡û
>W141702001
JMLE01000002
Actinomycetota
Arthrobacter sp. UNC362MFTsu5.1 [JMLE]
284506
284432
-
Met
CAT
[ENA]
¡û
>W09102040
AAHG01000004
Actinomycetota
Arthrobacter sp. FB24 [AAHG]
387171
387095
-
Met
CAT
[ENA]
¡û
>W1910181562
BJMD01000003
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
171056
170982
-
Met
CAT
[ENA]
¡û
>C09100273
CP001341
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [CP001341]
3073703
3073629
-
Met
CAT
[Ensembl]
¡û
>W1911532766
OIVI01000416
Actinomycetota
Arthrobacter alpinus [OIVI]
58674
58600
-
Met
CAT
[ENA]
¡û
>W1911566772
PCPC01000001
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
425343
425417
+
Met
CAT
[ENA]
¡û
>W1911567544
PCPR01000001
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
170225
170151
-
Met
CAT
[ENA]
¡û
>W1911798264
QYLP01000101
Actinomycetota
Arthrobacter celericrescens NEAU-SA2 [QYLP]
149105
149029
-
Met
CAT
[ENA]
¡û
>W1810167229
PJII01000001
Actinomycetota
Arthrobacter sp. ZGTC412 [PJII]
572397
572323
-
Met
CAT
[ENA]
¡û
>W1810167275
PJIJ01000001
Actinomycetota
Arthrobacter sp. ZGTC212 [PJIJ]
865107
865181
+
Met
CAT
[ENA]
¡û
>W1810167327
PJIK01000001
Actinomycetota
Arthrobacter sp. ZGTC131 [PJIK]
645063
644987
-
Met
CAT
[ENA]
¡û
>W1810167374
PJIL01000001
Actinomycetota
Arthrobacter sp. Y81 [PJIL]
70242
70318
+
Met
CAT
[ENA]
¡û
>W1810167721
PJIS01000001
Actinomycetota
Arthrobacter sp. 9E06 [PJIS]
511307
511233
-
Met
CAT
[ENA]
¡û
>W1810167772
PJIT01000001
Actinomycetota
Arthrobacter sp. 9E18 [PJIT]
511307
511233
-
Met
CAT
[ENA]
¡û
>W1810167823
PJIU01000001
Actinomycetota
Arthrobacter sp. 9E16 [PJIU]
511307
511233
-
Met
CAT
[ENA]
¡û
>W1810167861
PJIV01000001
Actinomycetota
Arthrobacter sp. 9E14 [PJIV]
124067
123993
-
Met
CAT
[ENA]
¡û
>W1810167928
PJIW01000008
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
178673
178747
+
Met
CAT
[ENA]
¡û
>W1810167970
PJIX01000001
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
498216
498142
-
Met
CAT
[ENA]
¡û
>W1810171943
PJMB01000001
Actinomycetota
Arthrobacter sp. AFG7.2 [PJMB]
584604
584530
-
Met
CAT
[ENA]
¡û
>W1810172031
PJMC01000017
Actinomycetota
Arthrobacter sp. AFG20 [PJMC]
87217
87291
+
Met
CAT
[ENA]
¡û
>W1810296147
PTJB01000003
Actinomycetota
Arthrobacter sp. B3 [PTJB]
204766
204840
+
Met
CAT
[ENA]
¡û
>W1810424161
PYUI01000001
Actinomycetota
Arthrobacter sp. H-02-3 LBUM149 [PYUI]
286133
286059
-
Met
CAT
[ENA]
¡û
>W1810474981
QAIQ01000576
Actinomycetota
Arthrobacter sp. HMWF013 [QAIQ]
9567
9641
+
Met
CAT
[ENA]
¡û
>W1810569949
QEHL01000002
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
148619
148693
+
Met
CAT
[ENA]
¡û
>W1810676781
QKMG01000001
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
366375
366449
+
Met
CAT
[ENA]
¡û
>W1810677231
QKMO01000001
Actinomycetota
Arthrobacter sp. RC1.1 241 [QKMO]
850232
850158
-
Met
CAT
[ENA]
¡û
>W1810695566
QLNP01000098
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
221224
221298
+
Met
CAT
[ENA]
¡û
>W1810707030
QMKP01000002
Actinomycetota
Arthrobacter sp. AQ5-06 [QMKP]
186879
186805
-
Met
CAT
[ENA]
¡û
>W1810786783
QRCU01000077
Actinomycetota
Arthrobacter silvisoli NEAU-SA1 [QRCU]
64037
64111
+
Met
CAT
[ENA]
¡û
>W1810789448
QRGQ01000012
Actinomycetota
Arthrobacter sp. RT-1 [QRGQ]
414825
414751
-
Met
CAT
[ENA]
¡û
>C151075178
CP011005
Actinomycetota
Psychromicrobium lacuslunae IHBB 11108 [CP011005]
2193963
2193887
-
Met
CAT
[Ensembl]
¡û
>W1510018485
BBUD01000037
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
357
431
+
Met
CAT
[ENA]
¡û
>W1510018532
BBUE01000031
Actinomycetota
Arthrobacter sp. Hiyo6 [BBUE]
471
547
+
Met
CAT
[ENA]
¡û
>W1510089381
CECE01000004
Actinomycetota
Arthrobacter koreensis 5J12A [CECE]
84026
84100
+
Met
CAT
[ENA]
¡û
>C11101007
CP002379
Actinomycetota
Pseudarthrobacter phenanthrenivorans Sphe3 [CP002379]
3060687
3060613
-
Met
CAT
[Ensembl]
¡û
>W1510641773
CVLG01000002
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
873899
873825
-
Met
CAT
[ENA]
¡û
>W1511319645
JPZK01000032
Actinomycetota
Arthrobacter sp. MWB30 [JPZK]
128676
128602
-
Met
CAT
[ENA]
¡û
>W1511398252
JTDL01000138
Actinomycetota
Sinomonas humi MUSC 117 [JTDL]
28243
28169
-
Met
CAT
[ENA]
¡û
>W1511489632
JWTB01000028
Actinomycetota
Pseudarthrobacter phenanthrenivorans SWC37 [JWTB]
24342
24416
+
Met
CAT
[ENA]
¡û
>W1511523746
JYCN01000023
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
3612
3538
-
Met
CAT
[ENA]
¡û
>W1511551604
JZTW01000001
Actinomycetota
Pseudarthrobacter chlorophenolicus Mor30.16 [JZTW]
373816
373890
+
Met
CAT
[ENA]
¡û
>W1511685684
LFQH01000037
Actinomycetota
Arthrobacter sp. ZBG10 [LFQH]
38142
38068
-
Met
CAT
[ENA]
¡û
>C161001317
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
3513197
3513271
+
Met
CAT
-
¡û
>C161060724
CP013747
Actinomycetota
Pseudarthrobacter sulfonivorans Ar51 [CP013747]
3644969
3645043
+
Met
CAT
[Ensembl]
¡û
>C161068068
CP014196
Actinomycetota
Arthrobacter sp. ATCC 21022 [CP014196]
3270284
3270208
-
Met
CAT
-
¡û
>W121086829
AKKK01000047
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
37254
37328
+
Met
CAT
[ENA]
¡û
>W121123825
BAEG01000080
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
199508
199584
+
Met
CAT
[ENA]
¡û
>W1610067281
BCQM01000001
Actinomycetota
Arthrobacter luteolus NBRC 107841 [BCQM]
516102
516028
-
Met
CAT
[ENA]
¡û
>W1610081867
BDDW01000001
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
374082
374156
+
Met
CAT
[ENA]
¡û
>C131002320
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
3475334
3475260
-
Met
CAT
[Ensembl]
¡û
>W1610515399
FMAZ01000001
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
439041
439115
+
Met
CAT
[ENA]
¡û
>W1610527133
JPWK01000029
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
22512
22588
+
Met
CAT
[ENA]
¡û
>W1610675861
LKIU01000002
Actinomycetota
Arthrobacter sp. Edens01 [LKIU]
345487
345563
+
Met
CAT
[ENA]
¡û
>W1610737694
LMOI01000001
Actinomycetota
Arthrobacter sp. Leaf137 [LMOI]
248415
248341
-
Met
CAT
[ENA]
¡û
>W1610737850
LMOL01000005
Actinomycetota
Arthrobacter sp. Leaf141 [LMOL]
369431
369505
+
Met
CAT
[ENA]
¡û
>W1610737930
LMON01000001
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
367356
367430
+
Met
CAT
[ENA]
¡û
>W1610738629
LMPC01000007
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
52276
52202
-
Met
CAT
[ENA]
¡û
>W1610742370
LMSB01000008
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
12779
12705
-
Met
CAT
[ENA]
¡û
>W1610742625
LMSF01000029
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
473442
473516
+
Met
CAT
[ENA]
¡û
>W1610742658
LMSG01000012
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
407863
407789
-
Met
CAT
[ENA]
¡û
>W1610742701
LMSH01000002
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
493296
493372
+
Met
CAT
[ENA]
¡û
>W1610742758
LMSI01000020
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
8473
8547
+
Met
CAT
[ENA]
¡û
>W1610767776
LNQM01000001
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
439041
439115
+
Met
CAT
[ENA]
¡û
>W1610774465
LNUV01000006
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
2266705
2266631
-
Met
CAT
[ENA]
¡û
>W1610850425
LQAP01000017
Actinomycetota
Arthrobacter sp. B6 [LQAP]
373706
373632
-
Met
CAT
[ENA]
¡û
>W1610989953
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
3304772
3304698
-
Met
CAT
[ENA]
¡û
>W1710064654
BCQM01000001
Actinomycetota
Arthrobacter luteolus NBRC 107841 [BCQM]
516102
516028
-
Met
CAT
[ENA]
¡û
>W1710080582
BDDW01000001
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
374082
374156
+
Met
CAT
[ENA]
¡û
>W1710084551
BDMH01000023
Actinomycetota
Paenarthrobacter ureafaciens KI72 [BDMH]
56704
56778
+
Met
CAT
[ENA]
¡û
>W1710501089
FMAZ01000001
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
439041
439115
+
Met
CAT
[ENA]
¡û
>W1710508484
FMWE01000001
Actinomycetota
Arthrobacter sp. UNCCL28 [FMWE]
394090
394164
+
Met
CAT
[ENA]
¡û
>W1710518941
FNEI01000020
Actinomycetota
Arthrobacter cupressi [FNEI]
24064
24138
+
Met
CAT
[ENA]
¡û
>W1710521061
FNGC01000002
Actinomycetota
Arthrobacter sp. ok362 [FNGC]
406428
406502
+
Met
CAT
[ENA]
¡û
>W1710521106
FNGD01000001
Actinomycetota
Arthrobacter sp. ov407 [FNGD]
238558
238632
+
Met
CAT
[ENA]
¡û
>W1710525691
FNJS01000034
Actinomycetota
Arthrobacter sp. ok909 [FNJS]
9175
9101
-
Met
CAT
[ENA]
¡û
>W1710527649
FNLE01000003
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
2113354
2113428
+
Met
CAT
[ENA]
¡û
>W1710529027
FNNR01000008
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
206441
206515
+
Met
CAT
[ENA]
¡û
>W1710541423
FNYI01000001
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
372655
372731
+
Met
CAT
[ENA]
¡û
>W1710550072
FOEZ01000002
Actinomycetota
Arthrobacter sp. OV608 [FOEZ]
453
379
-
Met
CAT
[ENA]
¡û
>W1710577607
FPAY01000001
Actinomycetota
Arthrobacter sp. ov118 [FPAY]
451607
451533
-
Met
CAT
[ENA]
¡û
>W1710603419
FUZB01000001
Actinomycetota
Arthrobacter sp. 31Cvi3.1E [FUZB]
569911
569837
-
Met
CAT
[ENA]
¡û
>W1710603504
FUZD01000002
Actinomycetota
Arthrobacter sp. 49Tsu3.1M3 [FUZD]
85125
85199
+
Met
CAT
[ENA]
¡û
>W1710605023
FVZL01000003
Actinomycetota
Arthrobacter sp. P2b [FVZL]
204766
204840
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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