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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270784 (15 seq.)
>W1711136355
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235299
235375
+
Asp
GTC
[ENA]
¡û
>C171057223
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
649823
649747
-
Asp
GTC
-
¡û
>C171118630
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
564783
564707
-
Asp
GTC
-
¡û
>WENV170640752
JFJP01024328
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4306
4230
-
Asp
GTC
[ENA]
¢þ
>C181078355
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
558888
558812
-
Asp
GTC
-
¡û
>W09110077
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
273705
273781
+
Asp
GTC
[ENA]
¡û
>W141814455
JQGK01000018
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
58538
58614
+
Asp
GTC
[ENA]
¡û
>C151018399
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
621200
621124
-
Asp
GTC
[Ensembl]
¡û
>W1510014715
BBQE01000002
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
313327
313403
+
Asp
GTC
[ENA]
¡û
>W1510014759
BBQF01000001
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
532617
532541
-
Asp
GTC
[ENA]
¡û
>C10111340
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
467605
467529
-
Asp
GTC
[Ensembl]
¡û
>C121011187
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
497000
496924
-
Asp
GTC
[Ensembl]
¡û
>C161001387
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
549245
549169
-
Asp
GTC
-
¡û
>C161001412
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
2191208
2191284
+
Asp
GTC
-
¡û
>W1610947475
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235299
235375
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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