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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270785 (28 seq.)
>C171057208
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
2991542
2991466
-
Ile
GAT
-
¡û
>C171057212
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
2092949
2092873
-
Ile
GAT
-
¡û
>C171118613
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
2835409
2835333
-
Ile
GAT
-
¡û
>C171118615
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
2829602
2829526
-
Ile
GAT
-
¡û
>C171118619
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
2077832
2077756
-
Ile
GAT
-
¡û
>WENV170609586
FUWD011439034
[FUWD] metagenome; unknown
31
107
+
Ile
GAT
[ENA]
¢þ
>WENV170658518
JTFP01130482
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
333
409
+
Ile
GAT
[ENA]
¢þ
>C181078338
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
2768812
2768736
-
Ile
GAT
-
¡û
>C181078340
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
2762982
2762906
-
Ile
GAT
-
¡û
>C181078344
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
2009122
2009046
-
Ile
GAT
-
¡û
>W09110096
ABUV01000002
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
312011
312087
+
Ile
GAT
[ENA]
¡û
>C151018384
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
3136627
3136551
-
Ile
GAT
[Ensembl]
¡û
>C151018388
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
2243755
2243679
-
Ile
GAT
[Ensembl]
¡û
>W1510014742
BBQE01000019
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
3650
3574
-
Ile
GAT
[ENA]
¡û
>W1510014744
BBQE01000020
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
3650
3574
-
Ile
GAT
[ENA]
¡û
>W1510014767
BBQF01000002
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
639589
639513
-
Ile
GAT
[ENA]
¡û
>C10111325
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
2280090
2280014
-
Ile
GAT
[Ensembl]
¡û
>C10111328
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
1701117
1701041
-
Ile
GAT
[Ensembl]
¡û
>C10111330
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
1694963
1694887
-
Ile
GAT
[Ensembl]
¡û
>C121011173
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
2476930
2476854
-
Ile
GAT
[Ensembl]
¡û
>C121011176
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
1720975
1720899
-
Ile
GAT
[Ensembl]
¡û
>C161001367
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
2573277
2573201
-
Ile
GAT
-
¡û
>C161001369
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
2566121
2566045
-
Ile
GAT
-
¡û
>C161001372
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
1867296
1867220
-
Ile
GAT
-
¡û
>C161001374
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
1861443
1861367
-
Ile
GAT
-
¡û
>C161001394
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
49774
49850
+
Ile
GAT
-
¡û
>C161001399
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
748262
748338
+
Ile
GAT
-
¡û
>C161001401
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
755418
755494
+
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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