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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27080 (72 seq.)
>WENV180103438
OAPA01038891
[OAPA] marine metagenome; ENVO:00002010
307
218
-
Ser
CGA
[ENA]
¡û
>WENV180110910
OAPN01013216
[OAPN] marine metagenome; 2011
496
405
-
Ser
CGA
[ENA]
¡û
>WENV180114515
OAPS01014370
[OAPS] marine metagenome; sea water
134
223
+
Ser
CGA
[ENA]
¡û
>WENV180208864
OBAJ01072789
[OBAJ] marine metagenome; Coastal water
359
270
-
Ser
CGA
[ENA]
¡û
>WENV180209121
OBAK01019644
[OBAK] marine metagenome; ENVO.00002150
297
208
-
Ser
CGA
[ENA]
¡û
>WENV180209620
OBAL01007670
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
358
447
+
Ser
CGA
[ENA]
¡û
>WENV180212506
OBAN01071130
[OBAN] marine metagenome; ENVO 00002150
83
172
+
Ser
CGA
[ENA]
¡û
>WENV180360998
OBNU01080527
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
40
129
+
Ser
CGA
[ENA]
¡û
>WENV180368369
OBOF01071566
[OBOF] marine metagenome; ENVO:00002010
223
312
+
Ser
CGA
[ENA]
¡û
>WENV180370038
OBOH01022043
[OBOH] marine metagenome; ENVO:00002010
713
624
-
Ser
CGA
[ENA]
¡û
>WENV180376815
OBOM01101533
[OBOM] marine metagenome; Seawater
25
114
+
Ser
CGA
[ENA]
¡û
>WENV180391432
OBPN01001191
[OBPN] marine metagenome; seawater
876
787
-
Ser
CGA
[ENA]
¡û
>WENV180395604
OBPT01053577
[OBPT] marine metagenome; ENVO:00002010 seawater
230
141
-
Ser
CGA
[ENA]
¡û
>WENV180398837
OBQB01002896
[OBQB] marine metagenome; ENVO.00002150
308
397
+
Ser
CGA
[ENA]
¡û
>WENV180399287
OBQH01000432
[OBQH] marine metagenome; ENV:00002010
1036
1125
+
Ser
CGA
[ENA]
¡û
>WENV180399482
OBQO01000002
[OBQO] marine metagenome; ENVO:00002010
40862
40951
+
Ser
CGA
[ENA]
¡û
>WENV180591374
OCOV01015314
[OCOV] marine metagenome; ENVO:01000301
30
119
+
Ser
CGA
[ENA]
¡û
>WENV180594017
OCOY01010845
[OCOY] marine metagenome; ENVO:00002010
423
512
+
Ser
CGA
[ENA]
¡û
>WENV181120455
OEFK01001514
[OEFK] marine metagenome; ENVO:00002010 seawater
1126
1037
-
Ser
CGA
[ENA]
¡û
>WENV181322642
OFKT01008609
[OFKT] marine metagenome; sea ice
576
665
+
Ser
CGA
[ENA]
¡û
>WENV181323567
OFKY01007800
[OFKY] marine metagenome; sea ice
657
746
+
Ser
CGA
[ENA]
¡û
>WENV181324128
OFLC01000219
[OFLC] marine metagenome; melt pond
2784
2873
+
Ser
CGA
[ENA]
¡û
>WENV181324472
OFLE01021190
[OFLE] marine metagenome; sea ice
221
310
+
Ser
CGA
[ENA]
¡û
>WENV181324514
OFLF01000286
[OFLF] marine metagenome; melt pond
1082
993
-
Ser
CGA
[ENA]
¡û
>WENV181325777
OFLJ01025293
[OFLJ] seawater metagenome; seawater
205
116
-
Ser
CGA
[ENA]
¡û
>WENV181391453
OFRT01008549
[OFRT] seawater metagenome; seawater
408
497
+
Ser
CGA
[ENA]
¡û
>WENV181839659
OGVO01005753
[OGVO] freshwater metagenome; freshwater
991
902
-
Ser
CGA
[ENA]
¡û
>WENV181856062
OGWM01014931
[OGWM] freshwater metagenome; freshwater
262
351
+
Ser
CGA
[ENA]
¡û
>WENV183614970
OOEA01022380
[OOEA] marine metagenome; sea ice
201
290
+
Ser
CGA
[ENA]
¡û
>WENV183615721
OOEB01110046
[OOEB] marine metagenome; sea ice
186
275
+
Ser
CGA
[ENA]
¡û
>WENV183617733
OOEG01069129
[OOEG] marine metagenome; sea ice
132
221
+
Ser
CGA
[ENA]
¡û
>WENV183618959
OOFP01008538
[OOFP] marine metagenome; seawater
408
497
+
Ser
CGA
[ENA]
¡û
>WENV183619631
OOFQ01025781
[OOFQ] marine metagenome; seawater
205
116
-
Ser
CGA
[ENA]
¡û
>WENV183620902
OOFT01000015
[OOFT] marine metagenome; sea ice
31409
31320
-
Ser
CGA
[ENA]
¡û
>WENV183622922
OOFW01049545
[OOFW] marine metagenome; sea ice
288
377
+
Ser
CGA
[ENA]
¡û
>WENV183625648
OOGG01005379
[OOGG] marine metagenome; sea ice
578
489
-
Ser
CGA
[ENA]
¡û
>WENV183627768
OOGL01042281
[OOGL] marine metagenome; sea ice
414
503
+
Ser
CGA
[ENA]
¡û
>WENV170003564
AGTN01376868
[AGTN] bioreactor metagenome; poplar biomass
49
138
+
Ser
CGA
[ENA]
¡û
>WENV170568054
FLMP01014636
[FLMP] seawater metagenome; seawater
736
647
-
Ser
CGA
[ENA]
¡û
>WENV170598416
FUWD010034788
[FUWD] metagenome; unknown
364
453
+
Ser
CGA
[ENA]
¡û
>WENV170606207
FUWD010631601
[FUWD] metagenome; unknown
220
309
+
Ser
CGA
[ENA]
¡û
>WENV170606260
FUWD010638030
[FUWD] metagenome; unknown
291
202
-
Ser
CGA
[ENA]
¡û
>WENV170622385
FUWD013101310
[FUWD] metagenome; unknown
143
232
+
Ser
CGA
[ENA]
¡û
>WENV170622386
FUWD013101333
[FUWD] metagenome; unknown
663
752
+
Ser
CGA
[ENA]
¡û
>WENV170627069
FUWD013231034
[FUWD] metagenome; unknown
2583
2494
-
Ser
CGA
[ENA]
¡û
>WENV170627613
FUWD013234090
[FUWD] metagenome; unknown
2583
2494
-
Ser
CGA
[ENA]
¡û
>WENV170630609
FUWD013315727
[FUWD] metagenome; unknown
143
232
+
Ser
CGA
[ENA]
¡û
>WENV170630610
FUWD013315750
[FUWD] metagenome; unknown
663
752
+
Ser
CGA
[ENA]
¡û
>WENV170949620
MEHZ011438101
[MEHZ] marine metagenome; marine surface water
392
481
+
Ser
CGA
[ENA]
¡û
>C191178319
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
178247
178336
+
Ser
CGA
-
¡û
>C191178358
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
161196
161285
+
Ser
CGA
-
¡û
>C191178397
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
143967
144056
+
Ser
CGA
-
¡û
>C151025286
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
1255299
1255210
-
Ser
CGA
[Ensembl]
¡û
>SRA1023313
SRR035084.71422
454 Sequencing (SRP001805)
94
5
-
Ser
CGA
[SRA]
>SRA1024335
SRR035084.301604
454 Sequencing (SRP001805)
261
350
+
Ser
CGA
[SRA]
>SRA1024843
SRR035084.418158
454 Sequencing (SRP001805)
39
128
+
Ser
CGA
[SRA]
>SRA1024846
SRR035084.419560
454 Sequencing (SRP001805)
90
179
+
Ser
CGA
[SRA]
>SRA1025356
SRR035084.562500
454 Sequencing (SRP001805)
144
55
-
Ser
CGA
[SRA]
>SRA1038141
SRR035090.253574
454 Sequencing (SRP001811)
178
89
-
Ser
CGA
[SRA]
>SRA1044703
SRR035092.325126
454 Sequencing (SRP001813)
89
178
+
Ser
CGA
[SRA]
>SRA1045243
SRR035093.40477
454 Sequencing (SRP001814)
93
182
+
Ser
CGA
[SRA]
>SRA1047219
SRR035093.485716
454 Sequencing (SRP001814)
81
170
+
Ser
CGA
[SRA]
>SRA1047384
SRR035093.528774
454 Sequencing (SRP001814)
30
119
+
Ser
CGA
[SRA]
>SRA1047576
SRR035093.584987
454 Sequencing (SRP001814)
122
211
+
Ser
CGA
[SRA]
>C201276009
CP054056
Actinomycetota
Aquiluna sp. 15G-AUS-rot [CP054056]
121025
121114
+
Ser
CGA
-
¡û
>WENV038599
AACY021946791
Marine microbial communities from Global Ocean Sampling (GOS)
571
480
-
Ser
CGA
[ENA]
>WENV047254
AACY022650676
Marine microbial communities from Global Ocean Sampling (GOS)
151
242
+
Ser
CGA
[ENA]
>WENV057575
AACY023299133
Marine microbial communities from Global Ocean Sampling (GOS)
324
415
+
Ser
CGA
[ENA]
>W121063460
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
232283
232372
+
Ser
CGA
[ENA]
¡û
>WENV058848
AACY023344333
Marine microbial communities from Global Ocean Sampling (GOS)
1067
976
-
Ser
CGA
[ENA]
>W1610625742
LIBA01000266
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1090
1179
+
Ser
CGA
[ENA]
¡û
>W1710756869
LIBA01000266
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1090
1179
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK