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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270929 (38 seq.)
>W1710792800
LJOP01000076
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
12553
12479
-
Phe
GAA
[ENA]
¡û
>W1710792832
LJOQ01000050
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
53668
53594
-
Phe
GAA
[ENA]
¡û
>W1710792946
LJOV01000032
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
10840
10766
-
Phe
GAA
[ENA]
¡û
>W1710793052
LJOX01000005
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
3926
3854
-
Phe
GAA
[ENA]
¡û
>W1711092434
LTEC01000008
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
65309
65381
+
Phe
GAA
[ENA]
¡û
>W1711629789
MPPI01000020
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
78575
78647
+
Phe
GAA
[ENA]
¡û
>C171000042
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
6077162
6077090
-
Phe
GAA
-
¡û
>W131036223
ALVJ01000012
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
139571
139499
-
Phe
GAA
[ENA]
¡û
>W131036299
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
6221773
6221845
+
Phe
GAA
[ENA]
¡û
>W131058339
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4415766
4415694
-
Phe
GAA
[ENA]
¡û
>W131110154
APIZ01000271
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
11636
11564
-
Phe
GAA
[ENA]
¡û
>C001220
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
5557885
5557813
-
Phe
GAA
[Ensembl]
¡û
>C015307
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
955607
955535
-
Phe
GAA
[Ensembl]
¡û
>WENV180364167
OBNZ01117479
[OBNZ] marine metagenome; ENVO:00002010
217
289
+
Phe
GAA
[ENA]
¢þ
>W141038261
ALVK01000018
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
1630949
1630877
-
Phe
GAA
[ENA]
¡û
>W141242743
CAIS01000042
Cyanobacteriota
Richelia intracellularis HM01 [CAIS]
3470
3544
+
Phe
GAA
[ENA]
¡û
>W141242870
CAIY01000035
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
5351
5277
-
Phe
GAA
[ENA]
¡û
>WENV170019398
BBPD01010387
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
92
20
-
Phe
GAA
[ENA]
¢þ
>W09101141
AAEA01000001
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
299587
299514
-
Phe
GAA
[ENA]
¡û
>W1910018065
BDQK01000013
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
688163
688235
+
Phe
GAA
[ENA]
¡û
>W1910018091
BDQL01000003
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
11528
11456
-
Phe
GAA
[ENA]
¡û
>W1910175567
BJCF01000066
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
12715
12787
+
Phe
GAA
[ENA]
¡û
>CHL090103134
U30821
Glaucocystophyceae
Cyanophora paradoxa
85297
85369
+
Phe
GAA
[ENA]
¡û
>W1911638297
PVWJ01000042
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
30978
31050
+
Phe
GAA
[ENA]
¡û
>W1810366261
PVWG01000024
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
62820
62892
+
Phe
GAA
[ENA]
¡û
>C151081806
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
2299441
2299365
-
Phe
GAA
[Ensembl]
¡û
>W1511108012
JJML01000030
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
12988
12916
-
Phe
GAA
[ENA]
¡û
>W11164203
AFJC01000004
Cyanobacteriota
Microcoleus vaginatus FGP-2 [AFJC]
108125
108197
+
Phe
GAA
[ENA]
¡û
>C131004143
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
1823785
1823857
+
Phe
GAA
[Ensembl]
¡û
>C131004702
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
2604577
2604649
+
Phe
GAA
[Ensembl]
¡û
>C131004778
CP003614
Cyanobacteriota
Oscillatoria nigro-viridis PCC 7112 [CP003614]
6973892
6973820
-
Phe
GAA
[Ensembl]
¡û
>W1610656725
LJOP01000076
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
12553
12479
-
Phe
GAA
[ENA]
¡û
>W1610656757
LJOQ01000050
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
53668
53594
-
Phe
GAA
[ENA]
¡û
>W1610656793
LJOR01000028
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
86075
86148
+
Phe
GAA
[ENA]
¡û
>W1610656884
LJOT01000151
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
8234
8306
+
Phe
GAA
[ENA]
¡û
>W1610656950
LJOV01000032
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
10840
10766
-
Phe
GAA
[ENA]
¡û
>W1610657056
LJOX01000005
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
3926
3854
-
Phe
GAA
[ENA]
¡û
>W1610926472
LTEC01000008
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
65309
65381
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK