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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271063 (42 seq.)
>W1711377894
MDZH01000146
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
39726
39799
+
Arg
ACG
[ENA]
¡û
>W1711603023
MOLN01000026
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
7252
7179
-
Arg
ACG
[ENA]
¡û
>W1711772012
MVGR01000003
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
536981
537054
+
Arg
ACG
[ENA]
¡û
>C171016628
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1400484
1400557
+
Arg
ACG
-
¡û
>C171112077
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
3314971
3314898
-
Arg
ACG
-
¡û
>W131063384
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1822795
1822722
-
Arg
ACG
[ENA]
¡û
>W131087169
AOCI01000078
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
31232
31159
-
Arg
ACG
[ENA]
¡û
>W131203782
ASZQ01000261
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
214
287
+
Arg
ACG
[ENA]
¡û
>W141065584
AQPY01001016
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
310
237
-
Arg
ACG
[ENA]
¡û
>W141242376
CAIH01000202
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
23917
23990
+
Arg
ACG
[ENA]
¡û
>W141242404
CAII01000197
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
2100
2027
-
Arg
ACG
[ENA]
¡û
>W141242444
CAIJ01000145
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
4636
4709
+
Arg
ACG
[ENA]
¡û
>W141242505
CAIK01000414
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
13276
13349
+
Arg
ACG
[ENA]
¡û
>W141242511
CAIL01000007
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
1195
1119
-
Arg
ACG
[ENA]
¡û
>W141242582
CAIM01000612
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
7010
6937
-
Arg
ACG
[ENA]
¡û
>W141242620
CAIN01000437
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
6615
6542
-
Arg
ACG
[ENA]
¡û
>W141242642
CAIO01000265
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
3712
3639
-
Arg
ACG
[ENA]
¡û
>W141242701
CAIP01000433
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
13321
13248
-
Arg
ACG
[ENA]
¡û
>W141242740
CAIQ01000535
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
603
530
-
Arg
ACG
[ENA]
¡û
>C08006360
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
5700456
5700383
-
Arg
ACG
[Ensembl]
¡û
>WENV182865879
OKRQ01005413
[OKRQ] freshwater metagenome; freshwater
708
635
-
Arg
ACG
[ENA]
¢þ
>WENV170680803
LFEF01023581
[LFEF] freshwater metagenome; waterbloom
42465
42538
+
Arg
ACG
[ENA]
¢þ
>C181046183
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2342891
2342818
-
Arg
ACG
-
¡û
>C191007272
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
3618815
3618742
-
Arg
ACG
-
¡û
>W1910020372
BDSG01000140
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
7636
7563
-
Arg
ACG
[ENA]
¡û
>W1910020392
BDSM01000023
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
104567
104640
+
Arg
ACG
[ENA]
¡û
>W1910038676
BEIU01000023
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
53793
53720
-
Arg
ACG
[ENA]
¡û
>W1910038707
BEIV01000045
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
11167
11240
+
Arg
ACG
[ENA]
¡û
>W1910067361
BEYQ01000007
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
35182
35255
+
Arg
ACG
[ENA]
¡û
>W1910067412
BFAC01000015
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
97240
97313
+
Arg
ACG
[ENA]
¡û
>W1910142331
BIFY01000051
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
4700
4773
+
Arg
ACG
[ENA]
¡û
>W1910665573
MCIH01000107
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
9742
9669
-
Arg
ACG
[ENA]
¡û
>W1910768676
MOLZ01000082
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
13225
13298
+
Arg
ACG
[ENA]
¡û
>C151079359
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1406286
1406359
+
Arg
ACG
[Ensembl]
¡û
>C151080692
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
1924447
1924520
+
Arg
ACG
-
¡û
>W1510013618
BBPA01000018
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
31027
30954
-
Arg
ACG
[ENA]
¡û
>W1610550819
JXYX01000003
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
111741
111814
+
Arg
ACG
[ENA]
¡û
>W1710004753
AJHB01001898
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
307
234
-
Arg
ACG
[ENA]
¡û
>W1710005104
AJUS01001995
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
340
267
-
Arg
ACG
[ENA]
¡û
>W1710005141
AJUT01001852
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
307
234
-
Arg
ACG
[ENA]
¡û
>W1710005177
AJUU01001846
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
310
237
-
Arg
ACG
[ENA]
¡û
>W1710660696
JXYX01000003
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
111741
111814
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK