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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271065 (26 seq.)
>W1711603046
MOLN01000197
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
588
512
-
Arg
CCT
[ENA]
¡û
>C171016633
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1970571
1970647
+
Arg
CCT
-
¡û
>W141242427
CAII01000677
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
67
143
+
Arg
CCT
[ENA]
¡û
>W141242468
CAIJ01000684
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
755
679
-
Arg
CCT
[ENA]
¡û
>W141242533
CAIL01000166
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
36654
36730
+
Arg
CCT
[ENA]
¡û
>W141242572
CAIM01000481
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
60
136
+
Arg
CCT
[ENA]
¡û
>W141242589
CAIN01000043
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
5855
5931
+
Arg
CCT
[ENA]
¡û
>W141242629
CAIO01000058
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
2258
2182
-
Arg
CCT
[ENA]
¡û
>W141242672
CAIP01000083
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
18977
19053
+
Arg
CCT
[ENA]
¡û
>W141242711
CAIQ01000048
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
34264
34188
-
Arg
CCT
[ENA]
¡û
>WENV170680756
LFEF01018863
[LFEF] freshwater metagenome; waterbloom
15886
15962
+
Arg
CCT
[ENA]
¢þ
>C181046158
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
976474
976549
+
Arg
CCT
-
¡û
>C191007256
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
1624389
1624464
+
Arg
CCT
-
¡û
>W1910020362
BDSG01000076
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
17563
17638
+
Arg
CCT
[ENA]
¡û
>W1910020378
BDSM01000003
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
44038
44113
+
Arg
CCT
[ENA]
¡û
>W1910038705
BEIV01000040
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
2112
2037
-
Arg
CCT
[ENA]
¡û
>W1910067396
BFAC01000004
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
368809
368884
+
Arg
CCT
[ENA]
¡û
>W1910142334
BIFY01000058
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
23443
23518
+
Arg
CCT
[ENA]
¡û
>W1910768686
MOLZ01000143
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
8110
8185
+
Arg
CCT
[ENA]
¡û
>C151079364
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1976427
1976503
+
Arg
CCT
[Ensembl]
¡û
>C151080693
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
2472782
2472858
+
Arg
CCT
-
¡û
>W1510013613
BBPA01000002
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
72970
72894
-
Arg
CCT
[ENA]
¡û
>W1610550841
JXYX01000021
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
5712
5636
-
Arg
CCT
[ENA]
¡û
>W1710004742
AJHB01001195
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
279
355
+
Arg
CCT
[ENA]
¡û
>W1710005128
AJUT01001189
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
292
368
+
Arg
CCT
[ENA]
¡û
>W1710660718
JXYX01000021
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
5712
5636
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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