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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271133 (97 seq.)
>W1710853378
LLWP01000004
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
741330
741254
-
Pro
TGG
[ENA]
¡û
>W1710876353
LMPD01000006
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
576527
576451
-
Pro
TGG
[ENA]
¡û
>W1710876354
LMPD01000006
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
576404
576330
-
Pro
TGG
[ENA]
¡û
>W1710877083
LMPU01000013
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
120255
120331
+
Pro
TGG
[ENA]
¡û
>W1710877084
LMPU01000013
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
120379
120455
+
Pro
TGG
[ENA]
¡û
>W1711504009
MKUD01000045
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
234
160
-
Pro
TGG
[ENA]
¡û
>W1711726892
MTSE01000033
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
11963
12037
+
Pro
TGG
[ENA]
¡û
>W1711769442
MVEC01000002
Bacteroidota
Spirosoma sp. 209 [MVEC]
419652
419578
-
Pro
TGG
[ENA]
¡û
>W1712082082
NHOT01000014
Bacteroidota
Pedobacter sp. AJM [NHOT]
44449
44373
-
Pro
TGG
[ENA]
¡û
>C171030724
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
987546
987622
+
Pro
TGG
-
¡û
>C171037551
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
5770874
5770798
-
Pro
TGG
-
¡û
>C171057644
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
4308630
4308704
+
Pro
TGG
-
¡û
>C171057645
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
4308760
4308834
+
Pro
TGG
-
¡û
>C171057646
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
4308890
4308964
+
Pro
TGG
-
¡û
>C171057647
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
4309021
4309097
+
Pro
TGG
-
¡û
>C171104383
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
3117433
3117509
+
Pro
TGG
-
¡û
>C171104435
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
3204696
3204770
+
Pro
TGG
-
¡û
>W131169807
ARFA01000010
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
436
362
-
Pro
TGG
[ENA]
¡û
>W131169896
ARFC01000006
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
963
887
-
Pro
TGG
[ENA]
¡û
>W131169945
ARFD01000077
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
12198
12272
+
Pro
TGG
[ENA]
¡û
>W131181652
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
1006911
1006985
+
Pro
TGG
[ENA]
¡û
>WENV180103205
OAPA01006700
[OAPA] marine metagenome; ENVO:00002010
423
497
+
Pro
TGG
[ENA]
¢þ
>WENV181222613
OFDC01000027
[OFDC] hot springs metagenome; Water
196122
196196
+
Pro
TGG
[ENA]
¢þ
>WENV181226776
OFDN01000057
[OFDN] hot springs metagenome; Water
7769
7843
+
Pro
TGG
[ENA]
¢þ
>WENV181325896
OFLJ01044098
[OFLJ] seawater metagenome; seawater
339
263
-
Pro
TGG
[ENA]
¢þ
>WENV181400987
OFSF01039667
[OFSF] wastewater metagenome; Exp Tend VB 100WW
338
412
+
Pro
TGG
[ENA]
¢þ
>W141142844
AWRU01000001
Bacteroidota
Pedobacter sp. V48 [AWRU]
6974
6900
-
Pro
TGG
[ENA]
¡û
>W141142845
AWRU01000001
Bacteroidota
Pedobacter sp. V48 [AWRU]
6846
6770
-
Pro
TGG
[ENA]
¡û
>WENV181837502
OGVK01059993
[OGVK] freshwater metagenome; freshwater
214
139
-
Pro
TGG
[ENA]
¢þ
>WENV181843510
OGVU01021471
[OGVU] freshwater metagenome; freshwater
423
497
+
Pro
TGG
[ENA]
¢þ
>WENV182572514
OJFL01016424
[OJFL] seawater metagenome; Sea water
935
1009
+
Pro
TGG
[ENA]
¢þ
>WENV183619764
OOFQ01045460
[OOFQ] marine metagenome; seawater
339
263
-
Pro
TGG
[ENA]
¢þ
>WENV183729044
PJTQ01003169
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1629
1554
-
Pro
TGG
[ENA]
¢þ
>WENV183741733
PJUG01003899
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
253
179
-
Pro
TGG
[ENA]
¢þ
>WENV183742617
PJUI01000031
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
115329
115403
+
Pro
TGG
[ENA]
¢þ
>WENV183742618
PJUI01000031
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
127791
127865
+
Pro
TGG
[ENA]
¢þ
>WENV170568892
FLMP01093341
[FLMP] seawater metagenome; seawater
607
531
-
Pro
TGG
[ENA]
¢þ
>C181113151
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
530
456
-
Pro
TGG
-
¡û
>C191183809
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
4970213
4970139
-
Pro
TGG
-
¡û
>W09109942
ABUR01000038
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
35658
35584
-
Pro
TGG
[ENA]
¡û
>W141727618
JNFF01000019
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
147584
147658
+
Pro
TGG
[ENA]
¡û
>W141727619
JNFF01000019
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
160451
160527
+
Pro
TGG
[ENA]
¡û
>W1911497299
OCNH01000008
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
24445
24371
-
Pro
TGG
[ENA]
¡û
>W1911647384
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
975668
975594
-
Pro
TGG
[ENA]
¡û
>W1911647385
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
975537
975463
-
Pro
TGG
[ENA]
¡û
>W1911647386
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
791382
791308
-
Pro
TGG
[ENA]
¡û
>W1810296335
PTJF01000015
Bacteroidota
Parapedobacter indicus RK1 [PTJF]
61015
61091
+
Pro
TGG
[ENA]
¡û
>W1810364389
PVTE01000022
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
74440
74366
-
Pro
TGG
[ENA]
¡û
>W1810503913
QBKM01000003
Bacteroidota
Pedobacter sp. YR016 [QBKM]
273355
273281
-
Pro
TGG
[ENA]
¡û
>W1810503914
QBKM01000003
Bacteroidota
Pedobacter sp. YR016 [QBKM]
273227
273153
-
Pro
TGG
[ENA]
¡û
>W1810693899
QLLR01000018
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
40605
40679
+
Pro
TGG
[ENA]
¡û
>W1810693906
QLLR01000025
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
600
526
-
Pro
TGG
[ENA]
¡û
>W1810761053
QPKV01000002
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
469648
469574
-
Pro
TGG
[ENA]
¡û
>C151047383
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4102300
4102226
-
Pro
TGG
[Ensembl]
¡û
>C151047417
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
96634
96558
-
Pro
TGG
[Ensembl]
¡û
>C151068629
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3973024
3972950
-
Pro
TGG
[Ensembl]
¡û
>SRA1027648
SRR035086.166261
454 Sequencing (SRP001807)
325
249
-
Pro
TGG
[SRA]
>C10111793
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
3230455
3230381
-
Pro
TGG
[Ensembl]
¡û
>W1511509430
JXRA01000066
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
16069
16143
+
Pro
TGG
[ENA]
¡û
>W1511509445
JXRA01000132
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
84
10
-
Pro
TGG
[ENA]
¡û
>W1511582928
LATM01000001
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
709717
709643
-
Pro
TGG
[ENA]
¡û
>C161049138
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1633882
1633956
+
Pro
TGG
[Ensembl]
¡û
>C161049139
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1634013
1634087
+
Pro
TGG
[Ensembl]
¡û
>C161049140
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1634145
1634219
+
Pro
TGG
[Ensembl]
¡û
>C161061553
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
3195875
3195949
+
Pro
TGG
[Ensembl]
¡û
>C161073054
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
519273
519199
-
Pro
TGG
[Ensembl]
¡û
>C161073055
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
448435
448361
-
Pro
TGG
[Ensembl]
¡û
>W1610612103
LGEL01000002
Bacteroidota
Pedobacter panaciterrae [LGEL]
87811
87737
-
Pro
TGG
[ENA]
¡û
>W1610612104
LGEL01000002
Bacteroidota
Pedobacter panaciterrae [LGEL]
87683
87607
-
Pro
TGG
[ENA]
¡û
>W1610716502
LLWP01000004
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
741330
741254
-
Pro
TGG
[ENA]
¡û
>W1610738699
LMPD01000006
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
576527
576451
-
Pro
TGG
[ENA]
¡û
>W1610738700
LMPD01000006
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
576404
576330
-
Pro
TGG
[ENA]
¡û
>W1610739429
LMPU01000013
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
120255
120331
+
Pro
TGG
[ENA]
¡û
>W1610739430
LMPU01000013
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
120379
120455
+
Pro
TGG
[ENA]
¡û
>W1710519668
FNEX01000004
Bacteroidota
Pedobacter sp. ok626 [FNEX]
419959
420035
+
Pro
TGG
[ENA]
¡û
>W1710522076
FNGY01000002
Bacteroidota
Pedobacter steynii [FNGY]
651819
651893
+
Pro
TGG
[ENA]
¡û
>W1710522077
FNGY01000002
Bacteroidota
Pedobacter steynii [FNGY]
651952
652028
+
Pro
TGG
[ENA]
¡û
>W1710522078
FNGY01000002
Bacteroidota
Pedobacter steynii [FNGY]
652082
652156
+
Pro
TGG
[ENA]
¡û
>W1710522165
FNGZ01000009
Bacteroidota
Pedobacter antarcticus [FNGZ]
45854
45928
+
Pro
TGG
[ENA]
¡û
>W1710522166
FNGZ01000009
Bacteroidota
Pedobacter antarcticus [FNGZ]
58680
58756
+
Pro
TGG
[ENA]
¡û
>W1710533291
FNRA01000004
Bacteroidota
Pedobacter hartonius [FNRA]
214560
214486
-
Pro
TGG
[ENA]
¡û
>W1710533292
FNRA01000004
Bacteroidota
Pedobacter hartonius [FNRA]
139615
139539
-
Pro
TGG
[ENA]
¡û
>W1710543128
FNZR01000004
Bacteroidota
Parapedobacter koreensis [FNZR]
211979
212055
+
Pro
TGG
[ENA]
¡û
>W1710558206
FOLQ01000014
Bacteroidota
Spirosoma endophyticum [FOLQ]
96881
96955
+
Pro
TGG
[ENA]
¡û
>W1710560848
FONS01000001
Bacteroidota
Pedobacter antarcticus [FONS]
1020922
1020996
+
Pro
TGG
[ENA]
¡û
>W1710560849
FONS01000001
Bacteroidota
Pedobacter antarcticus [FONS]
1033788
1033864
+
Pro
TGG
[ENA]
¡û
>W1710563337
FOPP01000002
Bacteroidota
Pedobacter insulae [FOPP]
344816
344892
+
Pro
TGG
[ENA]
¡û
>W1710563338
FOPP01000002
Bacteroidota
Pedobacter insulae [FOPP]
387238
387314
+
Pro
TGG
[ENA]
¡û
>W1710564557
FOQO01000015
Bacteroidota
Parapedobacter indicus [FOQO]
79132
79056
-
Pro
TGG
[ENA]
¡û
>W1710573719
FOXS01000001
Bacteroidota
Hymenobacter arizonensis [FOXS]
408410
408484
+
Pro
TGG
[ENA]
¡û
>W1710583237
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
1605341
1605415
+
Pro
TGG
[ENA]
¡û
>W1710583238
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
1605472
1605548
+
Pro
TGG
[ENA]
¡û
>W1710603033
FUYS01000011
Bacteroidota
Parapedobacter luteus [FUYS]
4452
4376
-
Pro
TGG
[ENA]
¡û
>W1710606782
FWYB01000004
Bacteroidota
Pedobacter nyackensis [FWYB]
167005
167081
+
Pro
TGG
[ENA]
¡û
>W1710606783
FWYB01000004
Bacteroidota
Pedobacter nyackensis [FWYB]
167133
167207
+
Pro
TGG
[ENA]
¡û
>W1710733609
LGEL01000002
Bacteroidota
Pedobacter panaciterrae [LGEL]
87811
87737
-
Pro
TGG
[ENA]
¡û
>W1710733610
LGEL01000002
Bacteroidota
Pedobacter panaciterrae [LGEL]
87683
87607
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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