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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271173 (85 seq.)
>W1711018303
LQWW01000009
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
133372
133297
-
Lys
TTT
[ENA]
¡û
>W1711034274
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
719642
719717
+
Lys
TTT
[ENA]
¡û
>W1711120299
LUFU01000018
Alphaproteobacteria
Ensifer aridi [LUFU]
198663
198588
-
Lys
TTT
[ENA]
¡û
>W1711120399
LUFW01000024
Alphaproteobacteria
Ensifer aridi [LUFW]
15598
15523
-
Lys
TTT
[ENA]
¡û
>W1711135194
LUYQ01000052
Alphaproteobacteria
Rhizobiales bacterium Alpha_04 [LUYQ]
17421
17346
-
Lys
TTT
[ENA]
¡û
>W1711318163
MAYB01000001
Alphaproteobacteria
Nitratireductor aquibiodomus [MAYB]
698002
698077
+
Lys
TTT
[ENA]
¡û
>C171074281
CP018171
Alphaproteobacteria
Aquibium oceanicum B7 [CP018171]
2500340
2500265
-
Lys
TTT
-
¡û
>W131045493
AMRM01000022
Alphaproteobacteria
Nitratireductor pacificus pht-3B [AMRM]
29139
29214
+
Lys
TTT
[ENA]
¡û
>W131046284
AMSI01000002
Alphaproteobacteria
Nitratireductor indicus C115 [AMSI]
74074
74149
+
Lys
TTT
[ENA]
¡û
>W141006757
AGWB01000003
Alphaproteobacteria
Bartonella bovis m02 [AGWB]
537220
537295
+
Lys
TTT
[ENA]
¡û
>W141006798
AGWC01000004
Alphaproteobacteria
Bartonella schoenbuchensis m07a [AGWC]
508755
508830
+
Lys
TTT
[ENA]
¡û
>WENV181324684
OFLG01005590
[OFLG] seawater metagenome; seawater
217
292
+
Lys
TTT
[ENA]
¡û
>W08005572
ABIA02000007
Alphaproteobacteria
Hoeflea phototrophica DFL-43 [ABIA]
152350
152425
+
Lys
TTT
[ENA]
¡û
>W141180669
AYGY02000094
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
630
555
-
Lys
TTT
[ENA]
¡û
>W141229355
BAMP01000006
Alphaproteobacteria
Nitratireductor aquibiodomus JCM 21793 [BAMP]
68383
68308
-
Lys
TTT
[ENA]
¡û
>WENV182951549
OKVU01001736
[OKVU] human gut metagenome; human gut
308
233
-
Lys
TTT
[ENA]
¡û
>WENV183624231
OOGC01005797
[OOGC] marine metagenome; seawater
333
258
-
Lys
TTT
[ENA]
¡û
>WENV170176593
CEOS01097085
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
178
253
+
Lys
TTT
[ENA]
¡û
>WENV170229695
CEQG01149599
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
23755
23680
-
Lys
TTT
[ENA]
¡û
>WENV170683209
LFIK01006868
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
429
354
-
Lys
TTT
[ENA]
¡û
>WENV170892400
MDTD01037779
[MDTD] marine metagenome; seawater
979
1054
+
Lys
TTT
[ENA]
¡û
>WENV170962109
MRWF01006443
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2231
2156
-
Lys
TTT
[ENA]
¡û
>WENV170963884
MRWG01001158
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
9061
9136
+
Lys
TTT
[ENA]
¡û
>WENV170964407
MRWG01010313
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
171
246
+
Lys
TTT
[ENA]
¡û
>WENV170964680
MRWG01030531
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
171
246
+
Lys
TTT
[ENA]
¡û
>C181176160
CP029208
Alphaproteobacteria
Nitratireductor sp. OM-1 [CP029208]
3095201
3095126
-
Lys
TTT
-
¡û
>W1810394303
PYBP01000001
Alphaproteobacteria
Nitratireductor sp. StC3 [PYBP]
357605
357680
+
Lys
TTT
[ENA]
¡û
>W1810487011
QAYG01000005
Alphaproteobacteria
Breoghania corrubedonensis DSM 23382 [QAYG]
54
129
+
Lys
TTT
[ENA]
¡û
>C151072544
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3543953
3543878
-
Lys
TTT
[Ensembl]
¡û
>C151101964
HG965802
Alphaproteobacteria
Bartonella henselae BM1374163 [HG965802]
943412
943487
+
Lys
TTT
[Ensembl]
¡û
>C151102006
HG969191
Alphaproteobacteria
Bartonella henselae BM1374165 [HG969191]
1045310
1045385
+
Lys
TTT
[Ensembl]
¡û
>C151102046
HG969192
Alphaproteobacteria
Bartonella tribocorum BM1374166 [HG969192]
1236940
1237015
+
Lys
TTT
[Ensembl]
¡û
>W2010104866
BJYZ01000025
Alphaproteobacteria
Skermanella aerolata NBRC 106429 [BJYZ]
130277
130202
-
Lys
TTT
[ENA]
¡û
>W2010303004
CABVLK010000027
Alphaproteobacteria
Hoeflea sp. EC-HK425 [CABVLK]
935212
935137
-
Lys
TTT
[ENA]
¡û
>W2010570148
JAATVV010000011
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
102091
102166
+
Lys
TTT
[ENA]
¡û
>W2010595411
JABETK010000002
Alphaproteobacteria
Mesorhizobium sediminum KCTC 42205 [JABETK]
688526
688601
+
Lys
TTT
[ENA]
¡û
>W2010725242
JACIDZ010000001
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
400252
400177
-
Lys
TTT
[ENA]
¡û
>W2011387063
RBVY01000004
Alphaproteobacteria
Phyllobacteriaceae bacterium Z3-1 [RBVY]
185893
185818
-
Lys
TTT
[ENA]
¡û
>W2011398705
RCIO01000004
Alphaproteobacteria
Mesorhizobium sp. Z1-4 [RCIO]
86023
86098
+
Lys
TTT
[ENA]
¡û
>W2011404272
RCWN01000001
Alphaproteobacteria
Notoacmeibacter sp. M2BS9Y-3-1 [RCWN]
1291028
1291103
+
Lys
TTT
[ENA]
¡û
>W2011613029
SJST01000006
Alphaproteobacteria
Oricola cellulosilytica KCTC 52183 [SJST]
143825
143900
+
Lys
TTT
[ENA]
¡û
>W2011639862
SMSI01000001
Alphaproteobacteria
Pseudohoeflea suaedae YC6898 [SMSI]
2054407
2054332
-
Lys
TTT
[ENA]
¡û
>W2011976151
VCLB01000007
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
182785
182860
+
Lys
TTT
[ENA]
¡û
>W2012031635
VHLG01000001
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
258223
258298
+
Lys
TTT
[ENA]
¡û
>W2012425506
WQNH01000016
Alphaproteobacteria
Chelativorans sp. lm93 [WQNH]
257
332
+
Lys
TTT
[ENA]
¡û
>W2012469005
WVVV01000002
Alphaproteobacteria
Chelativorans sp. ZYF759 [WVVV]
329687
329762
+
Lys
TTT
[ENA]
¡û
>W2110023721
BMGG01000002
Alphaproteobacteria
Chelatococcus reniformis CGMCC 1.12919 [BMGG]
428322
428247
-
Lys
TTT
[ENA]
¡û
>W2110050563
BMZO01000001
Alphaproteobacteria
Limoniibacter endophyticus KCTC 42097 [BMZO]
177464
177539
+
Lys
TTT
[ENA]
¡û
>W2110319005
JADGMQ010000001
Alphaproteobacteria
Aquamicrobium sp. cd-1 [JADGMQ]
406069
406144
+
Lys
TTT
[ENA]
¡û
>W2110423647
JAEKJX010000010
Alphaproteobacteria
Nitratireductor aquimarinus SY-2-4 [JAEKJX]
110337
110412
+
Lys
TTT
[ENA]
¡û
>W2110507606
JAFKCY010000003
Alphaproteobacteria
Nitratireductor pacificus TN14-6 [JAFKCY]
72893
72968
+
Lys
TTT
[ENA]
¡û
>W2110507693
JAFKDA010000003
Alphaproteobacteria
Nitratireductor aquimarinus TN21-2 [JAFKDA]
72893
72968
+
Lys
TTT
[ENA]
¡û
>W2110507839
JAFKDD010000004
Alphaproteobacteria
Nitratireductor pacificus TN28-1 [JAFKDD]
72893
72968
+
Lys
TTT
[ENA]
¡û
>W2110507888
JAFKDE010000003
Alphaproteobacteria
Nitratireductor aquimarinus TN35-13 [JAFKDE]
222562
222637
+
Lys
TTT
[ENA]
¡û
>W2110507926
JAFKDF010000001
Alphaproteobacteria
Nitratireductor aquibiodomus TN35-16 [JAFKDF]
396269
396344
+
Lys
TTT
[ENA]
¡û
>W2110642015
JAHSQO010000001
Alphaproteobacteria
Nitratireductor sp. R6 [JAHSQO]
382521
382446
-
Lys
TTT
[ENA]
¡û
>W2110642056
JAHSSF010000001
Alphaproteobacteria
Nitratireductor sp. L1-7-SE [JAHSSF]
598312
598387
+
Lys
TTT
[ENA]
¡û
>W2110652313
JAHVIG010000003
Alphaproteobacteria
Epibacterium mobile DP7N14-3 [JAHVIG]
222862
222937
+
Lys
TTT
[ENA]
¡û
>W2110652362
JAHVIH010000003
Alphaproteobacteria
Nitratireductor sp. DP7N14-4 [JAHVIH]
222862
222937
+
Lys
TTT
[ENA]
¡û
>W2110653248
JAHVIV010000004
Alphaproteobacteria
Nitratireductor aquimarinus TN21-4 [JAHVIV]
72893
72968
+
Lys
TTT
[ENA]
¡û
>W2110653470
JAHVIY010000008
Alphaproteobacteria
Nitratireductor aquimarinus TN7-10 [JAHVIY]
110337
110412
+
Lys
TTT
[ENA]
¡û
>W2110688666
JAINFJ010000005
Alphaproteobacteria
Oricola sp. JL-62 [JAINFJ]
20800
20725
-
Lys
TTT
[ENA]
¡û
>W2110688720
JAINFK010000005
Alphaproteobacteria
Oricola cellulosilytica JCM 19534 [JAINFK]
61029
60954
-
Lys
TTT
[ENA]
¡û
>W2110706081
JAIVLY010000002
Alphaproteobacteria
Nitratireductor aquimarinus TN21-10 [JAIVLY]
134981
134906
-
Lys
TTT
[ENA]
¡û
>W2110706132
JAIVLZ010000008
Alphaproteobacteria
Nitratireductor aquimarinus TN14-8 [JAIVLZ]
52154
52079
-
Lys
TTT
[ENA]
¡û
>C211232443
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2046542
2046467
-
Lys
TTT
-
¡û
>C211364614
CP078143
Alphaproteobacteria
Nitratireductor kimnyeongensis KACC 11904 [CP078143]
3720478
3720403
-
Lys
TTT
-
¡û
>C231327657
CP093044
Alphaproteobacteria
Bartonella krasnovii 90B_7 [CP093044]
947414
947489
+
Lys
TTT
-
¡û
>C231327723
CP093045
Alphaproteobacteria
Bartonella krasnovii 36C_7b [CP093045]
1012882
1012809
-
Lys
TTT
-
¡û
>C231327764
CP093046
Alphaproteobacteria
Bartonella krasnovii 84B_2 [CP093046]
1076108
1076033
-
Lys
TTT
-
¡û
>C241064518
CP042301
Alphaproteobacteria
Nitratireductor mangrovi SY7 [CP042301]
1488195
1488120
-
Lys
TTT
-
¡û
>C241169395
CP054836
Alphaproteobacteria
Oricola thermophila MEBiC13590 [CP054836]
1335237
1335162
-
Lys
TTT
-
¡û
>C241293873
CP130430
Alphaproteobacteria
Brucella anthropi MWF001 [CP130430, CP130431]
1478844
1478769
-
Lys
TTT
-
¡û
>C11117265
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
2471365
2471440
+
Lys
TTT
[Ensembl]
¡û
>W1511687956
LFVY01000005
Alphaproteobacteria
Nitratireductor soli ZZ-1 [LFVY]
127680
127755
+
Lys
TTT
[ENA]
¡û
>C161070364
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
2134590
2134665
+
Lys
TTT
[Ensembl]
¡û
>W121071499
AJXZ01000040
Alphaproteobacteria
Nitratireductor aquibiodomus RA22 [AJXZ]
56846
56921
+
Lys
TTT
[ENA]
¡û
>W121085116
AKIZ01000015
Alphaproteobacteria
Phyllobacterium sp. YR531 [AKIZ]
107705
107630
-
Lys
TTT
[ENA]
¡û
>W1610026896
AVFK01000018
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
20385
20460
+
Lys
TTT
[ENA]
¡û
>W1610946314
LUYQ01000052
Alphaproteobacteria
Rhizobiales bacterium Alpha_04 [LUYQ]
17421
17346
-
Lys
TTT
[ENA]
¡û
>W1611061581
MAYB01000001
Alphaproteobacteria
Nitratireductor aquibiodomus [MAYB]
698002
698077
+
Lys
TTT
[ENA]
¡û
>W1710023061
AVFK01000018
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
20385
20460
+
Lys
TTT
[ENA]
¡û
>W1710535323
FNSL01000001
Alphaproteobacteria
Nitratireductor aquibiodomus ES.061 [FNSL]
438483
438408
-
Lys
TTT
[ENA]
¡û
>W1710574090
FOXZ01000016
Alphaproteobacteria
Nitratireductor indicus [FOXZ]
74459
74534
+
Lys
TTT
[ENA]
¡û
>W1710601606
FUXL01000006
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
25309
25384
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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