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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271198 (174 seq.)
>W1711136079
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
515412
515336
-
Met
CAT
[ENA]
¡û
>W1711167326
LVWG01000033
Chlorobiota
Pelodictyon luteolum [LVWG]
1653
1579
-
Met
CAT
[ENA]
¡û
>W1711626095
MPJE01000082
Chlorobiota
Chlorobium sp. KB01 [MPJE]
4689
4615
-
Met
CAT
[ENA]
¡û
>C005301
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
1748934
1749010
+
Met
CAT
[Ensembl]
¡û
>C006613
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
919760
919687
-
Met
CAT
[Ensembl]
¡û
>C007040
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
563586
563510
-
Met
CAT
[Ensembl]
¡û
>C016767
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
656842
656769
-
Met
CAT
[Ensembl]
¡û
>C018249
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1365260
1365333
+
Met
CAT
[Ensembl]
¡û
>w018037
AASE01000010
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
20492
20568
+
Met
CAT
[ENA]
¡û
>C171060564
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
1832785
1832861
+
Met
CAT
-
¡û
>w007203
AAIK01000018
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
18871
18798
-
Met
CAT
[ENA]
¡û
>w006120
AAHJ01000037
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
23780
23704
-
Met
CAT
[ENA]
¡û
>C08003522
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
588157
588083
-
Met
CAT
[Ensembl]
¡û
>C08003616
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
624267
624194
-
Met
CAT
[Ensembl]
¡û
>C08003810
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
2925108
2925182
+
Met
CAT
[Ensembl]
¡û
>C08007724
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
892179
892103
-
Met
CAT
[Ensembl]
¡û
>WENV170598547
FUWD010039543
[FUWD] metagenome; unknown
194
270
+
Met
CAT
[ENA]
¢þ
>WENV170598864
FUWD010052676
[FUWD] metagenome; unknown
128
202
+
Met
CAT
[ENA]
¢þ
>WENV170598870
FUWD010052760
[FUWD] metagenome; unknown
50
124
+
Met
CAT
[ENA]
¢þ
>WENV170613650
FUWD012815676
[FUWD] metagenome; unknown
9245
9171
-
Met
CAT
[ENA]
¢þ
>WENV170614308
FUWD012829894
[FUWD] metagenome; unknown
1469
1395
-
Met
CAT
[ENA]
¢þ
>WENV170624370
FUWD013180668
[FUWD] metagenome; unknown
389
315
-
Met
CAT
[ENA]
¢þ
>WENV170632657
FUWD013385783
[FUWD] metagenome; unknown
389
315
-
Met
CAT
[ENA]
¢þ
>W09102668
AAIB01000033
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
8579
8653
+
Met
CAT
[ENA]
¡û
>W09103368
AAJD01000013
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
21549
21623
+
Met
CAT
[ENA]
¡û
>SRA1019317
SRR035082.434668
454 Sequencing (SRP001803)
299
225
-
Met
CAT
[SRA]
>SRA1019955
SRR035083.30289
454 Sequencing (SRP001804)
229
303
+
Met
CAT
[SRA]
>SRA1019980
SRR035083.36000
454 Sequencing (SRP001804)
137
63
-
Met
CAT
[SRA]
>SRA1019990
SRR035083.37663
454 Sequencing (SRP001804)
231
305
+
Met
CAT
[SRA]
>SRA1020112
SRR035083.58827
454 Sequencing (SRP001804)
48
122
+
Met
CAT
[SRA]
>SRA1020115
SRR035083.58862
454 Sequencing (SRP001804)
207
281
+
Met
CAT
[SRA]
>SRA1020123
SRR035083.59800
454 Sequencing (SRP001804)
259
185
-
Met
CAT
[SRA]
>SRA1020203
SRR035083.73940
454 Sequencing (SRP001804)
141
67
-
Met
CAT
[SRA]
>SRA1020222
SRR035083.76555
454 Sequencing (SRP001804)
414
340
-
Met
CAT
[SRA]
>SRA1020265
SRR035083.86100
454 Sequencing (SRP001804)
211
137
-
Met
CAT
[SRA]
>SRA1020311
SRR035083.95499
454 Sequencing (SRP001804)
209
283
+
Met
CAT
[SRA]
>SRA1020531
SRR035083.130845
454 Sequencing (SRP001804)
309
235
-
Met
CAT
[SRA]
>SRA1020560
SRR035083.135054
454 Sequencing (SRP001804)
86
12
-
Met
CAT
[SRA]
>SRA1020620
SRR035083.141867
454 Sequencing (SRP001804)
154
228
+
Met
CAT
[SRA]
>SRA1020652
SRR035083.147398
454 Sequencing (SRP001804)
291
365
+
Met
CAT
[SRA]
>SRA1020681
SRR035083.151113
454 Sequencing (SRP001804)
34
108
+
Met
CAT
[SRA]
>SRA1020747
SRR035083.159255
454 Sequencing (SRP001804)
299
225
-
Met
CAT
[SRA]
>SRA1020781
SRR035083.164168
454 Sequencing (SRP001804)
494
420
-
Met
CAT
[SRA]
>SRA1020814
SRR035083.167751
454 Sequencing (SRP001804)
476
402
-
Met
CAT
[SRA]
>SRA1020832
SRR035083.171137
454 Sequencing (SRP001804)
36
110
+
Met
CAT
[SRA]
>SRA1020839
SRR035083.171988
454 Sequencing (SRP001804)
364
290
-
Met
CAT
[SRA]
>SRA1020846
SRR035083.172585
454 Sequencing (SRP001804)
293
367
+
Met
CAT
[SRA]
>SRA1020883
SRR035083.178846
454 Sequencing (SRP001804)
424
350
-
Met
CAT
[SRA]
>SRA1020944
SRR035083.189265
454 Sequencing (SRP001804)
259
185
-
Met
CAT
[SRA]
>SRA1020973
SRR035083.192158
454 Sequencing (SRP001804)
309
235
-
Met
CAT
[SRA]
>SRA1020984
SRR035083.193308
454 Sequencing (SRP001804)
322
396
+
Met
CAT
[SRA]
>SRA1021096
SRR035083.208535
454 Sequencing (SRP001804)
222
148
-
Met
CAT
[SRA]
>SRA1021126
SRR035083.212717
454 Sequencing (SRP001804)
151
225
+
Met
CAT
[SRA]
>SRA1021158
SRR035083.217945
454 Sequencing (SRP001804)
185
259
+
Met
CAT
[SRA]
>SRA1021178
SRR035083.220553
454 Sequencing (SRP001804)
320
246
-
Met
CAT
[SRA]
>SRA1021328
SRR035083.242968
454 Sequencing (SRP001804)
357
431
+
Met
CAT
[SRA]
>SRA1021402
SRR035083.254779
454 Sequencing (SRP001804)
205
279
+
Met
CAT
[SRA]
>SRA1021419
SRR035083.256093
454 Sequencing (SRP001804)
259
333
+
Met
CAT
[SRA]
>SRA1021463
SRR035083.262072
454 Sequencing (SRP001804)
77
3
-
Met
CAT
[SRA]
>SRA1021468
SRR035083.262607
454 Sequencing (SRP001804)
357
283
-
Met
CAT
[SRA]
>SRA1021531
SRR035083.270023
454 Sequencing (SRP001804)
259
185
-
Met
CAT
[SRA]
>SRA1021604
SRR035083.280420
454 Sequencing (SRP001804)
107
33
-
Met
CAT
[SRA]
>SRA1021681
SRR035083.292253
454 Sequencing (SRP001804)
279
205
-
Met
CAT
[SRA]
>SRA1021690
SRR035083.292789
454 Sequencing (SRP001804)
21
95
+
Met
CAT
[SRA]
>SRA1021732
SRR035083.298561
454 Sequencing (SRP001804)
158
84
-
Met
CAT
[SRA]
>SRA1021737
SRR035083.299327
454 Sequencing (SRP001804)
150
76
-
Met
CAT
[SRA]
>SRA1021835
SRR035083.314927
454 Sequencing (SRP001804)
280
206
-
Met
CAT
[SRA]
>SRA1021839
SRR035083.315792
454 Sequencing (SRP001804)
279
205
-
Met
CAT
[SRA]
>SRA1021900
SRR035083.326420
454 Sequencing (SRP001804)
221
147
-
Met
CAT
[SRA]
>SRA1021920
SRR035083.328193
454 Sequencing (SRP001804)
491
417
-
Met
CAT
[SRA]
>SRA1022014
SRR035083.339080
454 Sequencing (SRP001804)
364
290
-
Met
CAT
[SRA]
>SRA1022038
SRR035083.343344
454 Sequencing (SRP001804)
371
297
-
Met
CAT
[SRA]
>SRA1022080
SRR035083.349654
454 Sequencing (SRP001804)
209
283
+
Met
CAT
[SRA]
>SRA1022111
SRR035083.354914
454 Sequencing (SRP001804)
73
147
+
Met
CAT
[SRA]
>SRA1022295
SRR035083.384051
454 Sequencing (SRP001804)
201
127
-
Met
CAT
[SRA]
>SRA1022329
SRR035083.390517
454 Sequencing (SRP001804)
77
3
-
Met
CAT
[SRA]
>SRA1022343
SRR035083.392591
454 Sequencing (SRP001804)
43
117
+
Met
CAT
[SRA]
>SRA1022371
SRR035083.397644
454 Sequencing (SRP001804)
502
428
-
Met
CAT
[SRA]
>SRA1022394
SRR035083.399663
454 Sequencing (SRP001804)
107
33
-
Met
CAT
[SRA]
>SRA1022457
SRR035083.408599
454 Sequencing (SRP001804)
365
291
-
Met
CAT
[SRA]
>SRA1022466
SRR035083.409594
454 Sequencing (SRP001804)
271
197
-
Met
CAT
[SRA]
>SRA1022473
SRR035083.411081
454 Sequencing (SRP001804)
37
110
+
Met
CAT
[SRA]
>SRA1022496
SRR035083.414019
454 Sequencing (SRP001804)
430
504
+
Met
CAT
[SRA]
>SRA1022566
SRR035083.425383
454 Sequencing (SRP001804)
210
136
-
Met
CAT
[SRA]
>SRA1022581
SRR035083.428607
454 Sequencing (SRP001804)
3
77
+
Met
CAT
[SRA]
>SRA1022585
SRR035083.428880
454 Sequencing (SRP001804)
371
297
-
Met
CAT
[SRA]
>SRA1022615
SRR035083.433364
454 Sequencing (SRP001804)
181
107
-
Met
CAT
[SRA]
>SRA1022652
SRR035083.437564
454 Sequencing (SRP001804)
196
122
-
Met
CAT
[SRA]
>SRA1022682
SRR035083.442103
454 Sequencing (SRP001804)
523
449
-
Met
CAT
[SRA]
>SRA1022744
SRR035083.452504
454 Sequencing (SRP001804)
107
33
-
Met
CAT
[SRA]
>SRA1022780
SRR035083.459564
454 Sequencing (SRP001804)
36
110
+
Met
CAT
[SRA]
>SRA1022878
SRR035083.477048
454 Sequencing (SRP001804)
211
137
-
Met
CAT
[SRA]
>SRA1022907
SRR035083.484074
454 Sequencing (SRP001804)
150
224
+
Met
CAT
[SRA]
>SRA1022934
SRR035083.490503
454 Sequencing (SRP001804)
272
345
+
Met
CAT
[SRA]
>SRA1022984
SRR035083.499872
454 Sequencing (SRP001804)
168
94
-
Met
CAT
[SRA]
>SRA1023009
SRR035083.504182
454 Sequencing (SRP001804)
153
79
-
Met
CAT
[SRA]
>SRA1023060
SRR035083.513695
454 Sequencing (SRP001804)
107
33
-
Met
CAT
[SRA]
>SRA1023063
SRR035083.513838
454 Sequencing (SRP001804)
247
321
+
Met
CAT
[SRA]
>SRA1023085
SRR035083.517556
454 Sequencing (SRP001804)
196
122
-
Met
CAT
[SRA]
>SRA1023088
SRR035083.517703
454 Sequencing (SRP001804)
365
291
-
Met
CAT
[SRA]
>SRA1029842
SRR035087.190696
454 Sequencing (SRP001808)
209
283
+
Met
CAT
[SRA]
>SRA1030912
SRR035087.346646
454 Sequencing (SRP001808)
198
124
-
Met
CAT
[SRA]
>SRA1032613
SRR035088.63599
454 Sequencing (SRP001809)
305
231
-
Met
CAT
[SRA]
>SRA1032675
SRR035088.76946
454 Sequencing (SRP001809)
212
286
+
Met
CAT
[SRA]
>SRA1032853
SRR035088.115744
454 Sequencing (SRP001809)
189
263
+
Met
CAT
[SRA]
>SRA1033005
SRR035088.150474
454 Sequencing (SRP001809)
110
36
-
Met
CAT
[SRA]
>SRA1033672
SRR035088.319297
454 Sequencing (SRP001809)
241
167
-
Met
CAT
[SRA]
>SRA1034101
SRR035088.487092
454 Sequencing (SRP001809)
33
107
+
Met
CAT
[SRA]
>SRA1034193
SRR035089.18931
454 Sequencing (SRP001810)
137
63
-
Met
CAT
[SRA]
>SRA1036912
SRR035090.37693
454 Sequencing (SRP001811)
280
353
+
Met
CAT
[SRA]
>SRA1037001
SRR035090.56654
454 Sequencing (SRP001811)
159
85
-
Met
CAT
[SRA]
>SRA1037063
SRR035090.68993
454 Sequencing (SRP001811)
65
139
+
Met
CAT
[SRA]
>SRA1037081
SRR035090.71250
454 Sequencing (SRP001811)
411
337
-
Met
CAT
[SRA]
>SRA1037152
SRR035090.83421
454 Sequencing (SRP001811)
105
31
-
Met
CAT
[SRA]
>SRA1037535
SRR035090.149788
454 Sequencing (SRP001811)
131
205
+
Met
CAT
[SRA]
>SRA1037575
SRR035090.157671
454 Sequencing (SRP001811)
394
320
-
Met
CAT
[SRA]
>SRA1037712
SRR035090.179501
454 Sequencing (SRP001811)
143
217
+
Met
CAT
[SRA]
>SRA1037754
SRR035090.188844
454 Sequencing (SRP001811)
100
26
-
Met
CAT
[SRA]
>SRA1037772
SRR035090.192191
454 Sequencing (SRP001811)
475
401
-
Met
CAT
[SRA]
>SRA1037969
SRR035090.227656
454 Sequencing (SRP001811)
30
104
+
Met
CAT
[SRA]
>SRA1037985
SRR035090.230272
454 Sequencing (SRP001811)
165
239
+
Met
CAT
[SRA]
>SRA1038038
SRR035090.236334
454 Sequencing (SRP001811)
130
56
-
Met
CAT
[SRA]
>SRA1038063
SRR035090.241216
454 Sequencing (SRP001811)
236
310
+
Met
CAT
[SRA]
>SRA1038073
SRR035090.242346
454 Sequencing (SRP001811)
475
401
-
Met
CAT
[SRA]
>SRA1038103
SRR035090.246227
454 Sequencing (SRP001811)
377
451
+
Met
CAT
[SRA]
>SRA1038200
SRR035090.264163
454 Sequencing (SRP001811)
407
333
-
Met
CAT
[SRA]
>SRA1038238
SRR035090.269757
454 Sequencing (SRP001811)
344
270
-
Met
CAT
[SRA]
>SRA1038271
SRR035090.277974
454 Sequencing (SRP001811)
134
208
+
Met
CAT
[SRA]
>SRA1038337
SRR035090.289333
454 Sequencing (SRP001811)
99
25
-
Met
CAT
[SRA]
>SRA1038357
SRR035090.291053
454 Sequencing (SRP001811)
393
467
+
Met
CAT
[SRA]
>SRA1038368
SRR035090.292321
454 Sequencing (SRP001811)
408
334
-
Met
CAT
[SRA]
>SRA1038452
SRR035090.308844
454 Sequencing (SRP001811)
70
144
+
Met
CAT
[SRA]
>SRA1038466
SRR035090.310903
454 Sequencing (SRP001811)
351
425
+
Met
CAT
[SRA]
>SRA1038488
SRR035090.314279
454 Sequencing (SRP001811)
72
146
+
Met
CAT
[SRA]
>SRA1038491
SRR035090.314605
454 Sequencing (SRP001811)
393
467
+
Met
CAT
[SRA]
>SRA1038495
SRR035090.315598
454 Sequencing (SRP001811)
393
467
+
Met
CAT
[SRA]
>SRA1038548
SRR035090.325852
454 Sequencing (SRP001811)
407
333
-
Met
CAT
[SRA]
>SRA1038555
SRR035090.327241
454 Sequencing (SRP001811)
100
26
-
Met
CAT
[SRA]
>SRA1038557
SRR035090.327757
454 Sequencing (SRP001811)
143
217
+
Met
CAT
[SRA]
>SRA1038595
SRR035090.333201
454 Sequencing (SRP001811)
394
468
+
Met
CAT
[SRA]
>SRA1038627
SRR035090.338939
454 Sequencing (SRP001811)
393
467
+
Met
CAT
[SRA]
>SRA1038677
SRR035090.348267
454 Sequencing (SRP001811)
256
182
-
Met
CAT
[SRA]
>SRA1038763
SRR035090.361981
454 Sequencing (SRP001811)
20
94
+
Met
CAT
[SRA]
>SRA1038954
SRR035090.399826
454 Sequencing (SRP001811)
122
48
-
Met
CAT
[SRA]
>SRA1038964
SRR035090.401697
454 Sequencing (SRP001811)
83
9
-
Met
CAT
[SRA]
>SRA1039206
SRR035090.443532
454 Sequencing (SRP001811)
218
144
-
Met
CAT
[SRA]
>SRA1039262
SRR035090.453906
454 Sequencing (SRP001811)
76
2
-
Met
CAT
[SRA]
>SRA1039266
SRR035090.454938
454 Sequencing (SRP001811)
243
169
-
Met
CAT
[SRA]
>SRA1039306
SRR035090.464731
454 Sequencing (SRP001811)
22
96
+
Met
CAT
[SRA]
>SRA1039339
SRR035090.471863
454 Sequencing (SRP001811)
198
272
+
Met
CAT
[SRA]
>SRA1039357
SRR035090.476205
454 Sequencing (SRP001811)
150
76
-
Met
CAT
[SRA]
>SRA1039374
SRR035090.479797
454 Sequencing (SRP001811)
128
54
-
Met
CAT
[SRA]
>SRA1039466
SRR035090.498015
454 Sequencing (SRP001811)
135
209
+
Met
CAT
[SRA]
>SRA1039572
SRR035090.518969
454 Sequencing (SRP001811)
168
94
-
Met
CAT
[SRA]
>SRA1039573
SRR035090.519020
454 Sequencing (SRP001811)
49
123
+
Met
CAT
[SRA]
>SRA1039638
SRR035090.534372
454 Sequencing (SRP001811)
347
273
-
Met
CAT
[SRA]
>SRA1039778
SRR035090.566813
454 Sequencing (SRP001811)
231
157
-
Met
CAT
[SRA]
>SRA1039785
SRR035090.568872
454 Sequencing (SRP001811)
182
108
-
Met
CAT
[SRA]
>SRA1039826
SRR035090.578988
454 Sequencing (SRP001811)
102
28
-
Met
CAT
[SRA]
>SRA1039946
SRR035090.611243
454 Sequencing (SRP001811)
347
273
-
Met
CAT
[SRA]
>SRA1039959
SRR035090.614442
454 Sequencing (SRP001811)
102
176
+
Met
CAT
[SRA]
>SRA1042300
SRR035091.369472
454 Sequencing (SRP001812)
61
135
+
Met
CAT
[SRA]
>SRA1045699
SRR035093.152458
454 Sequencing (SRP001814)
63
137
+
Met
CAT
[SRA]
>SRA1045866
SRR035093.184261
454 Sequencing (SRP001814)
344
270
-
Met
CAT
[SRA]
>SRA1052328
SRR035098.183332
454 Sequencing (SRP001819)
54
128
+
Met
CAT
[SRA]
>SRA1052422
SRR035098.198503
454 Sequencing (SRP001819)
122
48
-
Met
CAT
[SRA]
>SRA1053925
SRR035099.2440
454 Sequencing (SRP001820)
45
119
+
Met
CAT
[SRA]
>SRA1053926
SRR035099.3458
454 Sequencing (SRP001820)
45
119
+
Met
CAT
[SRA]
>SRA1053927
SRR035099.4109
454 Sequencing (SRP001820)
45
119
+
Met
CAT
[SRA]
>SRA1054664
SRR035099.183144
454 Sequencing (SRP001820)
111
37
-
Met
CAT
[SRA]
>SRA1054687
SRR035099.189005
454 Sequencing (SRP001820)
138
212
+
Met
CAT
[SRA]
>SRA1054800
SRR035099.217586
454 Sequencing (SRP001820)
391
317
-
Met
CAT
[SRA]
>W1610947199
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
515412
515336
-
Met
CAT
[ENA]
¡û
>W1610977657
LVWG01000033
Chlorobiota
Pelodictyon luteolum [LVWG]
1653
1579
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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