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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271203 (91 seq.)
>W1711090657
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
17083
17159
+
Met
CAT
[ENA]
¡û
>W1711090659
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
17379
17455
+
Met
CAT
[ENA]
¡û
>W1711124911
LUKQ02000106
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
1318
1242
-
Met
CAT
[ENA]
¡û
>W1711124912
LUKQ02000106
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
1183
1107
-
Met
CAT
[ENA]
¡û
>W1711124913
LUKQ02000106
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
1048
972
-
Met
CAT
[ENA]
¡û
>W1711129229
LUTV01000004
Gammaproteobacteria
Endozoicomonas ascidiicola [LUTV]
727592
727668
+
Met
CAT
[ENA]
¡û
>W1712081286
NHNK01000006
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
137418
137494
+
Met
CAT
[ENA]
¡û
>W1712081287
NHNK01000006
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
137529
137605
+
Met
CAT
[ENA]
¡û
>W131169617
AREW01000004
Gammaproteobacteria
Endozoicomonas elysicola DSM 22380 [AREW]
559412
559336
-
Met
CAT
[ENA]
¡û
>C012988
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2099269
2099345
+
Met
CAT
[Ensembl]
¡û
>C012989
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2099446
2099522
+
Met
CAT
[Ensembl]
¡û
>C012990
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2099573
2099649
+
Met
CAT
[Ensembl]
¡û
>C012991
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2099700
2099776
+
Met
CAT
[Ensembl]
¡û
>C012992
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2099827
2099903
+
Met
CAT
[Ensembl]
¡û
>C012993
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2100004
2100080
+
Met
CAT
[Ensembl]
¡û
>W141284702
JAMB01000016
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
721
645
-
Met
CAT
[ENA]
¡û
>W141284718
JAMB01000036
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
696
620
-
Met
CAT
[ENA]
¡û
>WENV170781616
MAAB01038832
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
829
753
-
Met
CAT
[ENA]
¢þ
>WENV170783941
MAAC01019865
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2502
2426
-
Met
CAT
[ENA]
¢þ
>WENV170783952
MAAC01020023
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2554
2630
+
Met
CAT
[ENA]
¢þ
>C191039829
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2395450
2395374
-
Met
CAT
-
¡û
>C191039830
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2395282
2395206
-
Met
CAT
-
¡û
>C191039831
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2395032
2394956
-
Met
CAT
-
¡û
>W141775364
JOJP01000001
Gammaproteobacteria
Endozoicomonas elysicola [JOJP]
2906882
2906806
-
Met
CAT
[ENA]
¡û
>W141775365
JOJP01000001
Gammaproteobacteria
Endozoicomonas elysicola [JOJP]
2906320
2906244
-
Met
CAT
[ENA]
¡û
>W141775366
JOJP01000001
Gammaproteobacteria
Endozoicomonas elysicola [JOJP]
2906180
2906104
-
Met
CAT
[ENA]
¡û
>W09106456
AAVH01000011
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
35864
35940
+
Met
CAT
[ENA]
¡û
>W09106457
AAVH01000011
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
36041
36117
+
Met
CAT
[ENA]
¡û
>W09106458
AAVH01000011
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
36168
36244
+
Met
CAT
[ENA]
¡û
>W09106459
AAVH01000011
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
36295
36371
+
Met
CAT
[ENA]
¡û
>W09106460
AAVH01000011
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
36422
36498
+
Met
CAT
[ENA]
¡û
>W09106461
AAVH01000011
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
36599
36675
+
Met
CAT
[ENA]
¡û
>W1910584849
JYBL01000027
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
74420
74496
+
Met
CAT
[ENA]
¡û
>W1910584862
JYBL01000064
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
105
181
+
Met
CAT
[ENA]
¡û
>W1910914905
NHTT01000029
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
21960
22036
+
Met
CAT
[ENA]
¡û
>W1810176319
PJPV01000047
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
82574
82650
+
Met
CAT
[ENA]
¡û
>W1810176320
PJPV01000047
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
82709
82785
+
Met
CAT
[ENA]
¡û
>W1810176321
PJPV01000047
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
82844
82920
+
Met
CAT
[ENA]
¡û
>W1810176322
PJPV01000047
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
82979
83055
+
Met
CAT
[ENA]
¡û
>W1810606246
QGOK01000020
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
35430
35354
-
Met
CAT
[ENA]
¡û
>W1810606247
QGOK01000020
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
35253
35177
-
Met
CAT
[ENA]
¡û
>W1810606248
QGOK01000020
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
35048
34972
-
Met
CAT
[ENA]
¡û
>W1810625214
QHJF01000005
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
167746
167670
-
Met
CAT
[ENA]
¡û
>W1810625215
QHJF01000005
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
167552
167476
-
Met
CAT
[ENA]
¡û
>W1810625216
QHJF01000005
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
167392
167316
-
Met
CAT
[ENA]
¡û
>W1810625217
QHJF01000005
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
167231
167155
-
Met
CAT
[ENA]
¡û
>W1810625218
QHJF01000005
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
167070
166994
-
Met
CAT
[ENA]
¡û
>W1810676259
QKLW01000002
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
263801
263725
-
Met
CAT
[ENA]
¡û
>W1810676261
QKLW01000002
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
263383
263307
-
Met
CAT
[ENA]
¡û
>W1810679669
QKRA01000009
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
13467
13391
-
Met
CAT
[ENA]
¡û
>W1810679670
QKRA01000009
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
13341
13265
-
Met
CAT
[ENA]
¡û
>W1810679671
QKRA01000009
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
13199
13123
-
Met
CAT
[ENA]
¡û
>W1810679672
QKRA01000009
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
13041
12965
-
Met
CAT
[ENA]
¡û
>W1810720375
QNRF01000014
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
4847
4923
+
Met
CAT
[ENA]
¡û
>W1810720376
QNRF01000014
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
4969
5045
+
Met
CAT
[ENA]
¡û
>W1810720377
QNRF01000014
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
5112
5188
+
Met
CAT
[ENA]
¡û
>W1810721724
QNSE01000018
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
645
569
-
Met
CAT
[ENA]
¡û
>W1810721725
QNSE01000018
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
467
391
-
Met
CAT
[ENA]
¡û
>W1810721726
QNSE01000018
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
341
265
-
Met
CAT
[ENA]
¡û
>W1810721727
QNSE01000018
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
215
139
-
Met
CAT
[ENA]
¡û
>W1810759679
QPJQ01000004
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
15431
15355
-
Met
CAT
[ENA]
¡û
>W1810885351
QUNG01000006
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
31414
31490
+
Met
CAT
[ENA]
¡û
>W1810885352
QUNG01000006
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
31678
31754
+
Met
CAT
[ENA]
¡û
>W1810885353
QUNG01000006
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
31884
31960
+
Met
CAT
[ENA]
¡û
>W1810885354
QUNG01000006
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
32046
32122
+
Met
CAT
[ENA]
¡û
>W1810885355
QUNG01000006
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
32208
32284
+
Met
CAT
[ENA]
¡û
>C11115046
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
2215739
2215663
-
Met
CAT
[Ensembl]
¡û
>C11115047
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
2215618
2215542
-
Met
CAT
[Ensembl]
¡û
>C11115048
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
2215173
2215097
-
Met
CAT
[Ensembl]
¡û
>C11115049
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
2214996
2214920
-
Met
CAT
[Ensembl]
¡û
>W1610503686
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
283647
283723
+
Met
CAT
[ENA]
¡û
>W1610503687
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
283805
283881
+
Met
CAT
[ENA]
¡û
>W1610503688
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
283963
284039
+
Met
CAT
[ENA]
¡û
>W1610503689
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
284121
284197
+
Met
CAT
[ENA]
¡û
>W1610504058
FLOE01000027
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
390
314
-
Met
CAT
[ENA]
¡û
>W1610504059
FLOE01000027
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
233
157
-
Met
CAT
[ENA]
¡û
>W1610504060
FLOE01000027
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
76
1
-
Met
CAT
[ENA]
¡û
>W1610540050
JSEE01000011
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
55403
55327
-
Met
CAT
[ENA]
¡û
>W1610540051
JSEE01000011
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
55282
55206
-
Met
CAT
[ENA]
¡û
>W1610924897
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
17083
17159
+
Met
CAT
[ENA]
¡û
>W1610924899
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
17379
17455
+
Met
CAT
[ENA]
¡û
>W1610935858
LUKQ01000314
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
1183
1107
-
Met
CAT
[ENA]
¡û
>W1610935859
LUKQ01000314
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
1048
972
-
Met
CAT
[ENA]
¡û
>W1610940302
LUTV01000004
Gammaproteobacteria
Endozoicomonas ascidiicola [LUTV]
727592
727668
+
Met
CAT
[ENA]
¡û
>W1710496515
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
283647
283723
+
Met
CAT
[ENA]
¡û
>W1710496516
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
283805
283881
+
Met
CAT
[ENA]
¡û
>W1710496517
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
283963
284039
+
Met
CAT
[ENA]
¡û
>W1710496518
FLOB01000004
Gammaproteobacteria
Marinomonas spartinae [FLOB]
284121
284197
+
Met
CAT
[ENA]
¡û
>W1710584002
FQVF01000038
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
7409
7485
+
Met
CAT
[ENA]
¡û
>W1710643071
JSEE01000011
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
55403
55327
-
Met
CAT
[ENA]
¡û
>W1710643072
JSEE01000011
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
55282
55206
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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