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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271276 (110 seq.)
>W1710905363
LNNF01000013
Bacteroidota
Flavobacterium psychrophilum [LNNF]
66617
66543
-
Met
CAT
[ENA]
¡û
>W1710914568
LNTP01000423
Bacteroidota
Flavobacterium psychrophilum [LNTP]
65022
64948
-
Met
CAT
[ENA]
¡û
>W1710914607
LNTQ01000179
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
67476
67402
-
Met
CAT
[ENA]
¡û
>W1711053981
LRTL01000002
Bacteroidota
Flavobacterium psychrophilum [LRTL]
171489
171415
-
Met
CAT
[ENA]
¡û
>W131214055
ATTM01000009
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
19724
19650
-
Met
CAT
[ENA]
¡û
>W131225389
AUDN01000022
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
68261
68335
+
Met
CAT
[ENA]
¡û
>W131229165
AUGO01000015
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
11381
11305
-
Met
CAT
[ENA]
¡û
>W131237946
AUSH01000078
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
27895
27819
-
Met
CAT
[ENA]
¡û
>W1711431507
MIJV01000025
Bacteroidota
Flavobacterium psychrophilum [MIJV]
7860
7786
-
Met
CAT
[ENA]
¡û
>W1711431534
MIJW01000016
Bacteroidota
Flavobacterium psychrophilum [MIJW]
74464
74390
-
Met
CAT
[ENA]
¡û
>W1711712440
MTBY01000002
Bacteroidota
Flavobacterium psychrophilum [MTBY]
68326
68252
-
Met
CAT
[ENA]
¡û
>W1711712474
MTBZ01000002
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
156253
156179
-
Met
CAT
[ENA]
¡û
>W1711712568
MTCB01000003
Bacteroidota
Flavobacterium psychrophilum [MTCB]
64817
64743
-
Met
CAT
[ENA]
¡û
>W1711712598
MTCC01000002
Bacteroidota
Flavobacterium psychrophilum [MTCC]
66798
66724
-
Met
CAT
[ENA]
¡û
>W1711712646
MTCD01000112
Bacteroidota
Flavobacterium psychrophilum [MTCD]
172
98
-
Met
CAT
[ENA]
¡û
>C009538
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
285237
285164
-
Met
CAT
[Ensembl]
¡û
>WENV180111269
OAPN01050250
[OAPN] marine metagenome; 2011
496
422
-
Ile2
CAT
[ENA]
¢þ
>WENV180115018
OAPS01097818
[OAPS] marine metagenome; sea water
229
155
-
Ile2
CAT
[ENA]
¢þ
>WENV181172027
OEIV010453938
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
211
137
-
Ile2
CAT
[ENA]
¢þ
>WENV181377206
OFRA01004081
[OFRA] wastewater metagenome; Lake Maggiore Verbania
608
534
-
Ile2
CAT
[ENA]
¢þ
>WENV181386651
OFRL01009476
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1571
1645
+
Ile2
CAT
[ENA]
¢þ
>WENV183621261
OOFT01032890
[OOFT] marine metagenome; sea ice
149
75
-
Ile2
CAT
[ENA]
¢þ
>WENV183749716
PPFU01202675
[PPFU] hypolithon metagenome; Antarctic Hypolithon
135
61
-
Ile2
CAT
[ENA]
¢þ
>C181220295
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
297876
297802
-
Met
CAT
-
¡û
>C191155224
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
2284903
2284977
+
Met
CAT
-
¡û
>W1910183379
BJNR01000006
Bacteroidota
Flavobacterium aquatile NBRC 15052 [BJNR]
145182
145256
+
Met
CAT
[ENA]
¡û
>W1910184586
BJSV01000025
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
5416
5490
+
Met
CAT
[ENA]
¡û
>W1910184619
BJSW01000021
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
5302
5376
+
Met
CAT
[ENA]
¡û
>W1910184649
BJSX01000009
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
6308
6382
+
Met
CAT
[ENA]
¡û
>W1910184707
BJSY01000058
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
34416
34342
-
Met
CAT
[ENA]
¡û
>W1910184727
BJSZ01000021
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
34415
34341
-
Met
CAT
[ENA]
¡û
>W1910184791
BJTA01000098
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
34415
34341
-
Met
CAT
[ENA]
¡û
>W1910184892
BJTD01000037
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
19679
19753
+
Met
CAT
[ENA]
¡û
>W1910184903
BJTE01000004
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
5446
5520
+
Met
CAT
[ENA]
¡û
>W1910184961
BJTF01000030
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
5400
5474
+
Met
CAT
[ENA]
¡û
>W1910502971
FYBY01000006
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
6201
6275
+
Met
CAT
[ENA]
¡û
>W1910503019
FYBZ01000032
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
95433
95507
+
Met
CAT
[ENA]
¡û
>W1910503055
FYCA01000048
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
355
281
-
Met
CAT
[ENA]
¡û
>W1910503084
FYCB01000049
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
74552
74478
-
Met
CAT
[ENA]
¡û
>W1910503119
FYCC01000033
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
57111
57185
+
Met
CAT
[ENA]
¡û
>W1910503156
FYCD01000037
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
6199
6273
+
Met
CAT
[ENA]
¡û
>W1910503170
FYCE01000009
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
354
280
-
Met
CAT
[ENA]
¡û
>W1910503203
FYCF01000022
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
6199
6273
+
Met
CAT
[ENA]
¡û
>W1910503236
FYCG01000004
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
84757
84831
+
Met
CAT
[ENA]
¡û
>W1910503285
FYCH01000023
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
51734
51660
-
Met
CAT
[ENA]
¡û
>W1910503332
FYCI01000054
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
72536
72462
-
Met
CAT
[ENA]
¡û
>W1910503578
FYCO01000037
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
95398
95472
+
Met
CAT
[ENA]
¡û
>W1910503602
FYCP01000109
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
580
654
+
Met
CAT
[ENA]
¡û
>W1910503614
FYCQ01000025
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
580
654
+
Met
CAT
[ENA]
¡û
>W1910503657
FYCS01000012
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
6068
6142
+
Met
CAT
[ENA]
¡û
>W1910503702
FYCT01000023
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
6200
6274
+
Met
CAT
[ENA]
¡û
>W1910503729
FYCU01000087
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
581
655
+
Met
CAT
[ENA]
¡û
>W1910503764
FYCV01000179
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
9366
9292
-
Met
CAT
[ENA]
¡û
>W1910503784
FYCW01000019
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
6199
6273
+
Met
CAT
[ENA]
¡û
>W1910503828
FYCX01000048
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
70966
70892
-
Met
CAT
[ENA]
¡û
>W1910503858
FYCY01000027
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
51734
51660
-
Met
CAT
[ENA]
¡û
>W1910503911
FYCZ01000036
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
66544
66470
-
Met
CAT
[ENA]
¡û
>W1910503926
FYDA01000015
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
6014
6088
+
Met
CAT
[ENA]
¡û
>W1910503970
FYDB01000029
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
114215
114141
-
Met
CAT
[ENA]
¡û
>W1910504013
FYDC01000026
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
6199
6273
+
Met
CAT
[ENA]
¡û
>W1910576498
JSCD01000010
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
50142
50216
+
Met
CAT
[ENA]
¡û
>W1910576630
JSWL01000005
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
64817
64743
-
Met
CAT
[ENA]
¡û
>W1910808805
MUGQ01000010
Bacteroidota
Flavobacterium aquatile ATCC 11947 [MUGQ]
171691
171617
-
Met
CAT
[ENA]
¡û
>W1910808940
MUGT01000059
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
12739
12813
+
Met
CAT
[ENA]
¡û
>W1910809488
MUHE01000005
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
51741
51667
-
Met
CAT
[ENA]
¡û
>W1911139431
NOXX01000158
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
2258
2183
-
Met
CAT
[ENA]
¡û
>W1911139432
NOXX01000158
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
2063
1988
-
Met
CAT
[ENA]
¡û
>W1911385606
NVQB01000001
Bacteroidota
Sphingobacteriaceae bacterium SH-48 [NVQB]
1922220
1922146
-
Met
CAT
[ENA]
¡û
>W1911564286
PCMW01000042
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
45711
45637
-
Met
CAT
[ENA]
¡û
>SRA1002070
SRR001308.224541
Metagenomic characterization of a wastewater treatment plant (SRP000180)
127
203
+
Met
CAT
[SRA]
>SRA1002988
SRR002326.139913
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
272
196
-
Met
CAT
[SRA]
>SRA1003245
SRR002326.336244
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
199
275
+
Met
CAT
[SRA]
>SRA1003374
SRR002326.417812
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
174
+
Met
CAT
[SRA]
>SRA1003406
SRR002326.440563
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
174
+
Met
CAT
[SRA]
>SRA1003481
SRR002326.493645
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
281
207
-
Met
CAT
[SRA]
>W1810265855
PQVG01000004
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
48553
48627
+
Met
CAT
[ENA]
¡û
>W1810533296
QCZI01000013
Bacteroidota
Flavobacterium psychrotolerans RB1R5 [QCZI]
61137
61211
+
Met
CAT
[ENA]
¡û
>C151018531
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
305220
305146
-
Met
CAT
[Ensembl]
¡û
>C151018579
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
296689
296615
-
Met
CAT
[Ensembl]
¡û
>C151030368
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
299687
299613
-
Met
CAT
[Ensembl]
¡û
>C151038992
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
247600
247526
-
Met
CAT
[Ensembl]
¡û
>C151039029
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
244362
244288
-
Met
CAT
[Ensembl]
¡û
>C151039067
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
247955
247881
-
Met
CAT
[Ensembl]
¡û
>C151039556
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
246769
246695
-
Met
CAT
[Ensembl]
¡û
>C151065090
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
283621
283547
-
Met
CAT
-
¡û
>C151065138
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
283415
283341
-
Met
CAT
-
¡û
>C151072408
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
276862
276788
-
Met
CAT
-
¡û
>C11109432
CP002542
Bacteroidota
Fluviicola taffensis DSM 16823 [CP002542]
63724
63650
-
Met
CAT
[Ensembl]
¡û
>W1511346613
JRHH01000005
Bacteroidota
Flavobacterium aquatile LMG 4008 [JRHH]
211537
211611
+
Met
CAT
[ENA]
¡û
>W1511357155
JRWA01000006
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
64301
64227
-
Met
CAT
[ENA]
¡û
>W1511357179
JRWB01000012
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
64297
64223
-
Met
CAT
[ENA]
¡û
>W1511357233
JRWC01000003
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
70683
70609
-
Met
CAT
[ENA]
¡û
>W1511357264
JRWD01000013
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
63961
63887
-
Met
CAT
[ENA]
¡û
>W1511357311
JRWE01000013
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
63968
63894
-
Met
CAT
[ENA]
¡û
>W1511357358
JRWF01000013
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
64023
63949
-
Met
CAT
[ENA]
¡û
>C121016996
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
370393
370467
+
Met
CAT
[Ensembl]
¡û
>C161024457
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
284314
284240
-
Met
CAT
-
¡û
>C161024505
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
284113
284039
-
Met
CAT
-
¡û
>C161024553
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
284150
284076
-
Met
CAT
-
¡û
>W1610062186
BCNG01000011
Bacteroidota
Flavobacterium psychrophilum [BCNG]
40571
40645
+
Met
CAT
[ENA]
¡û
>W1610764377
LNNF01000013
Bacteroidota
Flavobacterium psychrophilum [LNNF]
66617
66543
-
Met
CAT
[ENA]
¡û
>W1610772927
LNTP01000423
Bacteroidota
Flavobacterium psychrophilum [LNTP]
65022
64948
-
Met
CAT
[ENA]
¡û
>W1610772966
LNTQ01000179
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
67476
67402
-
Met
CAT
[ENA]
¡û
>W1610895169
LRTL01000002
Bacteroidota
Flavobacterium psychrophilum [LRTL]
171489
171415
-
Met
CAT
[ENA]
¡û
>W1710059727
BCNG01000011
Bacteroidota
Flavobacterium psychrophilum [BCNG]
40571
40645
+
Met
CAT
[ENA]
¡û
>W1710087852
BDSH01000005
Bacteroidota
Flavobacterium psychrophilum [BDSH]
30930
30856
-
Met
CAT
[ENA]
¡û
>W1710507322
FMVE01000006
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
103883
103957
+
Met
CAT
[ENA]
¡û
>W1710555824
FOJT01000003
Bacteroidota
Flavobacterium swingsii [FOJT]
275238
275312
+
Met
CAT
[ENA]
¡û
>W1710564812
FOQT01000001
Bacteroidota
Halpernia frigidisoli [FOQT]
148111
148187
+
Met
CAT
[ENA]
¡û
>W1710585056
FQWB01000001
Bacteroidota
Flavobacterium fluvii [FQWB]
367218
367142
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK