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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271336 (42 seq.)
>W1711377899
MDZH01000166
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
9997
9924
-
Met
CAT
[ENA]
¡û
>W131063382
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1906303
1906376
+
Met
CAT
[ENA]
¡û
>W131087163
AOCI01000048
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
607
534
-
Met
CAT
[ENA]
¡û
>W131203767
ASZQ01000222
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
41593
41520
-
Met
CAT
[ENA]
¡û
>W1711603027
MOLN01000049
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
14665
14592
-
Met
CAT
[ENA]
¡û
>W1711772019
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
749811
749884
+
Met
CAT
[ENA]
¡û
>C171016651
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2254005
2253932
-
Met
CAT
-
¡û
>C171112067
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
3404011
3404084
+
Met
CAT
-
¡û
>WENV180275142
OBHS01022165
[OBHS] metagenome; freshwater sediment
96
169
+
Met
CAT
[ENA]
¢þ
>W141065581
AQPY01000867
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
1629
1556
-
Met
CAT
[ENA]
¡û
>W141242356
CAIH01000006
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
14686
14759
+
Met
CAT
[ENA]
¡û
>W141242400
CAII01000176
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
11872
11799
-
Met
CAT
[ENA]
¡û
>W141242464
CAIJ01000551
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
2854
2927
+
Met
CAT
[ENA]
¡û
>W141242509
CAIK01000433
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
3411
3484
+
Met
CAT
[ENA]
¡û
>W141242528
CAIL01000146
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
5975
5902
-
Met
CAT
[ENA]
¡û
>W141242569
CAIM01000417
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
5592
5519
-
Met
CAT
[ENA]
¡û
>W141242599
CAIN01000106
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
17786
17859
+
Met
CAT
[ENA]
¡û
>W141242661
CAIO01000480
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
8065
7992
-
Met
CAT
[ENA]
¡û
>W141242696
CAIP01000419
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
38806
38733
-
Met
CAT
[ENA]
¡û
>W141242726
CAIQ01000262
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
35761
35688
-
Met
CAT
[ENA]
¡û
>C08006375
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
2255383
2255310
-
Met
CAT
[Ensembl]
¡û
>WENV170680783
LFEF01022258
[LFEF] freshwater metagenome; waterbloom
32870
32797
-
Met
CAT
[ENA]
¢þ
>C181046167
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2961839
2961912
+
Met
CAT
-
¡û
>C191007288
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
202158
202085
-
Met
CAT
-
¡û
>W1910020350
BDSG01000041
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
3524
3597
+
Met
CAT
[ENA]
¡û
>W1910020395
BDSM01000025
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
47365
47438
+
Met
CAT
[ENA]
¡û
>W1910038663
BEIU01000010
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
104459
104532
+
Met
CAT
[ENA]
¡û
>W1910038686
BEIV01000010
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
37969
37896
-
Met
CAT
[ENA]
¡û
>W1910067379
BEYQ01000018
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
3261
3188
-
Met
CAT
[ENA]
¡û
>W1910067391
BFAC01000003
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
436714
436787
+
Met
CAT
[ENA]
¡û
>W1910142349
BIFY01000147
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
6545
6618
+
Met
CAT
[ENA]
¡û
>W1910665566
MCIH01000050
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
27416
27489
+
Met
CAT
[ENA]
¡û
>W1910768699
MOLZ01000309
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
639
566
-
Met
CAT
[ENA]
¡û
>C151079382
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2257458
2257385
-
Met
CAT
[Ensembl]
¡û
>C151080698
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
3801088
3801161
+
Met
CAT
-
¡û
>W1510013643
BBPA01000070
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
229459
229386
-
Met
CAT
[ENA]
¡û
>W1610550804
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
167306
167379
+
Met
CAT
[ENA]
¡û
>W1710004732
AJHB01000740
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
139
66
-
Met
CAT
[ENA]
¡û
>W1710005081
AJUS01000797
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
140
67
-
Met
CAT
[ENA]
¡û
>W1710005118
AJUT01000746
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
140
67
-
Met
CAT
[ENA]
¡û
>W1710005154
AJUU01000743
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
144
71
-
Met
CAT
[ENA]
¡û
>W1710660681
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
167306
167379
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK