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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271381 (123 seq.)
>W1711065213
LSBP01000010
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
108787
108862
+
Ala
GGC
[ENA]
¡û
>W1711509616
MKZT01000005
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [MKZT]
188686
188761
+
Ala
GGC
[ENA]
¡û
>W1711750478
MUMZ01000104
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
59958
60033
+
Ala
GGC
[ENA]
¡û
>C171092332
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
3137022
3136947
-
Ala
GGC
-
¡û
>C171117489
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
2780698
2780773
+
Ala
GGC
-
¡û
>C171118027
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
455931
455856
-
Ala
GGC
-
¡û
>W131180785
ARNK01000035
Gammaproteobacteria
Kushneria aurantia DSM 21353 [ARNK]
19067
18992
-
Ala
GGC
[ENA]
¡û
>W131180822
ARNK01000066
Gammaproteobacteria
Kushneria aurantia DSM 21353 [ARNK]
130257
130332
+
Ala
GGC
[ENA]
¡û
>W131196516
ASTJ01000024
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
198510
198435
-
Ala
GGC
[ENA]
¡û
>W131220986
AUAB01000002
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
262004
262079
+
Ala
GGC
[ENA]
¡û
>W141093336
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
914879
914954
+
Ala
GGC
[ENA]
¡û
>W141152729
AXCA01000101
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
40395
40470
+
Ala
GGC
[ENA]
¡û
>WENV170015935
AZIJ01004679
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
301
226
-
Ala
GGC
[ENA]
¡û
>WENV170176947
CEOS01141254
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2950
3025
+
Ala
GGC
[ENA]
¡û
>WENV170294038
CESC01031352
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
372
447
+
Ala
GGC
[ENA]
¡û
>WENV170337634
CETA01141711
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
261
336
+
Ala
GGC
[ENA]
¡û
>WENV170372584
CETS01113264
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
461
536
+
Ala
GGC
[ENA]
¡û
>WENV170702044
LKMJ01000373
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5088
5013
-
Ala
GGC
[ENA]
¡û
>WENV170965465
MTEU01002934
[MTEU] soil metagenome; naturally attenuated soil
62453
62528
+
Ala
GGC
[ENA]
¡û
>WENV170965686
MTEV01000129
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
62372
62447
+
Ala
GGC
[ENA]
¡û
>WENV170966105
MTEX01001593
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
62372
62447
+
Ala
GGC
[ENA]
¡û
>C181052487
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
2650746
2650671
-
Ala
GGC
-
¡û
>C181084561
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
3045431
3045506
+
Ala
GGC
-
¡û
>W141727036
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
2512624
2512549
-
Ala
GGC
[ENA]
¡û
>W141754497
JNVT01000038
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
24852
24927
+
Ala
GGC
[ENA]
¡û
>W1911539873
ONZI01000002
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
229056
228981
-
Ala
GGC
[ENA]
¡û
>W1911747096
QWBW01000019
Gammaproteobacteria
Halomonas sp. 362.1 [QWBW]
21131
21206
+
Ala
GGC
[ENA]
¡û
>W1810177422
PJRN01000003
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
236270
236195
-
Ala
GGC
[ENA]
¡û
>W1810200076
PNRG01000033
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
748381
748456
+
Ala
GGC
[ENA]
¡û
>W1810248947
PQBW01001650
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
141
216
+
Ala
GGC
[ENA]
¡û
>W1810385398
PXNS01000010
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
48586
48661
+
Ala
GGC
[ENA]
¡û
>W1810385456
PXNT01000016
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
68461
68386
-
Ala
GGC
[ENA]
¡û
>W1810425984
PYVV01000008
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
36203
36278
+
Ala
GGC
[ENA]
¡û
>W1810426086
PYVX01000001
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
765748
765673
-
Ala
GGC
[ENA]
¡û
>W1810444039
PZJK01000005
Gammaproteobacteria
Salinicola sp. RZ23 [PZJK]
71739
71814
+
Ala
GGC
[ENA]
¡û
>W1810444280
PZJO01000002
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
829443
829368
-
Ala
GGC
[ENA]
¡û
>W1810444380
PZJP01000017
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
312068
311993
-
Ala
GGC
[ENA]
¡û
>W1810444717
PZJV01000001
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
986431
986356
-
Ala
GGC
[ENA]
¡û
>W1810624113
QHGY01000001
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
1115916
1115841
-
Ala
GGC
[ENA]
¡û
>W1810760650
QPKI01000005
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
48602
48527
-
Ala
GGC
[ENA]
¡û
>W1810786968
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
542681
542756
+
Ala
GGC
[ENA]
¡û
>W2010103584
BJXU01000165
Gammaproteobacteria
Halomonas cupida NBRC 102219 [BJXU]
1793
1718
-
Ala
GGC
[ENA]
¡û
>W2010156475
CAAHFN010000065
Gammaproteobacteria
Halomonas sp. EAR18 [CAAHFN]
307595
307520
-
Ala
GGC
[ENA]
¡û
>W2010396241
FTLE01000005
Gammaproteobacteria
Halomonas sp. Marseille-P2426 [FTLE]
198462
198387
-
Ala
GGC
[ENA]
¡û
>W2010449911
JAACZO010000017
Gammaproteobacteria
Halomonas sp. JSM 104105 [JAACZO]
5372
5447
+
Ala
GGC
[ENA]
¡û
>W2010537944
JAAQTN010000027
Gammaproteobacteria
Halomonas desiderata FB2 [JAAQTN]
2371
2446
+
Ala
GGC
[ENA]
¡û
>W2010538019
JAAQTO010000069
Gammaproteobacteria
Halomonas sp. DX6 [JAAQTO]
33254
33179
-
Ala
GGC
[ENA]
¡û
>W2010673481
JACCDF010000007
Gammaproteobacteria
Halomonas salicampi BH103 [JACCDF]
61987
61912
-
Ala
GGC
[ENA]
¡û
>W2010681369
JACEFT010000020
Gammaproteobacteria
Halomonas kenyensis DSM 17331 [JACEFT]
72811
72736
-
Ala
GGC
[ENA]
¡û
>W2010683130
JACEMT010000049
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
246366
246441
+
Ala
GGC
[ENA]
¡û
>W2010716813
JACHXP010000014
Gammaproteobacteria
Halomonas cerina CECT 7282 [JACHXP]
26836
26911
+
Ala
GGC
[ENA]
¡û
>W2010716848
JACHXQ010000001
Gammaproteobacteria
Halomonas fontilapidosi CECT 7341 [JACHXQ]
771264
771189
-
Ala
GGC
[ENA]
¡û
>W2010716898
JACHXR010000001
Gammaproteobacteria
Halomonas stenophila CECT 7744 [JACHXR]
125936
126011
+
Ala
GGC
[ENA]
¡û
>W2011170148
ONZI01000002
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
229056
228981
-
Ala
GGC
[ENA]
¡û
>W2011315708
QWBW01000019
Gammaproteobacteria
Halomonas sp. 362.1 [QWBW]
21131
21206
+
Ala
GGC
[ENA]
¡û
>W2011354147
RAPM01000001
Gammaproteobacteria
Kushneria marisflavi DSM 15357 [RAPM]
564410
564335
-
Ala
GGC
[ENA]
¡û
>W2011373802
RBIN01000007
Gammaproteobacteria
Kushneria sinocarnis DSM 23229 [RBIN]
67037
67112
+
Ala
GGC
[ENA]
¡û
>W2011485430
RRCU01000003
Gammaproteobacteria
Halomonas sp. YLB-10 [RRCU]
524792
524717
-
Ala
GGC
[ENA]
¡û
>W2011498004
RXNS01000016
Gammaproteobacteria
Halomonas nitroreducens 11S [RXNS]
78313
78388
+
Ala
GGC
[ENA]
¡û
>W2011532890
SBLD01000008
Gammaproteobacteria
Halomonas sp. TBZ202 [SBLD]
123800
123725
-
Ala
GGC
[ENA]
¡û
>W2011633616
SMFU01000007
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
537824
537899
+
Ala
GGC
[ENA]
¡û
>W2011647696
SNWH01000009
Gammaproteobacteria
Halomonas ventosae 1_TX [SNWH]
81551
81476
-
Ala
GGC
[ENA]
¡û
>W2011651841
SNZJ01000004
Gammaproteobacteria
Halomonas ventosae CECT 5797 [SNZJ]
195721
195646
-
Ala
GGC
[ENA]
¡û
>W2011966783
VBUI01000008
Gammaproteobacteria
Halomonas sp. TBZ3 [VBUI]
67475
67400
-
Ala
GGC
[ENA]
¡û
>W2012141899
VTPY01000005
Gammaproteobacteria
Halomonas sp. L5 [VTPY]
146755
146830
+
Ala
GGC
[ENA]
¡û
>W2012326964
WHMA01000044
Gammaproteobacteria
Halomonas sp. NO4 [WHMA]
14288
14213
-
Ala
GGC
[ENA]
¡û
>W2012376495
WMEV01000005
Gammaproteobacteria
Halomonas alkaliantarctica 22509_21_Filter [WMEV]
193023
193098
+
Ala
GGC
[ENA]
¡û
>W2012400788
WNXF01000004
Gammaproteobacteria
Modicisalibacter sp. 'Wilcox' [WNXF]
50499
50574
+
Ala
GGC
[ENA]
¡û
>W2110050331
BMZI01000005
Gammaproteobacteria
Salinicola rhizosphaerae KCTC 32998 [BMZI]
82801
82726
-
Ala
GGC
[ENA]
¡û
>W2110050465
BMZM01000001
Gammaproteobacteria
Kushneria pakistanensis KCTC 42082 [BMZM]
715497
715572
+
Ala
GGC
[ENA]
¡û
>W2110051365
BNAE01000001
Gammaproteobacteria
Halomonas urumqiensis CGMCC 1.12917 [BNAE]
680480
680405
-
Ala
GGC
[ENA]
¡û
>W2110423439
JAEKJT010000010
Gammaproteobacteria
Halomonas litopenaei SN20-17 [JAEKJT]
150716
150641
-
Ala
GGC
[ENA]
¡û
>W2110508849
JAFLEN010000003
Gammaproteobacteria
Salinicola sp. DM10 [JAFLEN]
90909
90834
-
Ala
GGC
[ENA]
¡û
>W2110579086
JAGXFC010000001
Gammaproteobacteria
Modicisalibacter tunisiensis R2A 31.P [JAGXFC]
127345
127420
+
Ala
GGC
[ENA]
¡û
>W2110579207
JAGXFD010000002
Gammaproteobacteria
LIT2(T) [JAGXFD]
178184
178109
-
Ala
GGC
[ENA]
¡û
>W2110579239
JAGXFE010000001
Gammaproteobacteria
Halomonas coralii R2A 31.J [JAGXFE]
4016522
4016597
+
Ala
GGC
[ENA]
¡û
>W2110579304
JAGXFF010000004
Gammaproteobacteria
Halomonas coralii MOD 31.J [JAGXFF]
119008
119083
+
Ala
GGC
[ENA]
¡û
>W2110639257
JAHQZT010000001
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
373465
373390
-
Ala
GGC
[ENA]
¡û
>W2110651166
JAHVHM010000011
Gammaproteobacteria
Halomonas sp. DP4Y7-2 [JAHVHM]
38282
38357
+
Ala
GGC
[ENA]
¡û
>W2110651402
JAHVHR010000006
Gammaproteobacteria
Halomonas sp. DP5N14-9 [JAHVHR]
192877
192802
-
Ala
GGC
[ENA]
¡û
>W2110651809
JAHVHX010000010
Gammaproteobacteria
Halomonas denitrificans DP5Y7-1 [JAHVHX]
38449
38524
+
Ala
GGC
[ENA]
¡û
>W2110651868
JAHVHY010000010
Gammaproteobacteria
Halomonas sp. DP5Y7-2 [JAHVHY]
37828
37903
+
Ala
GGC
[ENA]
¡û
>W2110652783
JAHVIN010000001
Gammaproteobacteria
Halomonas sp. DP8Y7-1 [JAHVIN]
38330
38405
+
Ala
GGC
[ENA]
¡û
>W2110652889
JAHVIO010000018
Gammaproteobacteria
Halomonas sp. DP8Y7-3 [JAHVIO]
186527
186452
-
Ala
GGC
[ENA]
¡û
>W2110654141
JAHVJM010000008
Gammaproteobacteria
Halomonas sp. DP1Y21-3 [JAHVJM]
35804
35879
+
Ala
GGC
[ENA]
¡û
>W2110655258
JAHVKI010000010
Gammaproteobacteria
Halomonas sp. DP3Y7-1 [JAHVKI]
138844
138769
-
Ala
GGC
[ENA]
¡û
>W2110655272
JAHVKJ010000004
Gammaproteobacteria
Halomonas sp. DP3Y7-2 [JAHVKJ]
138844
138769
-
Ala
GGC
[ENA]
¡û
>W2110655826
JAHVKS010000011
Gammaproteobacteria
Halomonas sp. DP4Y7-1 [JAHVKS]
38282
38357
+
Ala
GGC
[ENA]
¡û
>W2110663857
JAHYCA010000005
Gammaproteobacteria
Halomonas sp. Y3S6 [JAHYCA]
250502
250427
-
Ala
GGC
[ENA]
¡û
>C201059430
CP035042
Gammaproteobacteria
Halomonas sp. BC-M4-5 [CP035042]
1624781
1624856
+
Ala
GGC
-
¡û
>W2110701118
JAIUZN010000013
Gammaproteobacteria
Halomonas denitrificans DP3Y115-1 [JAIUZN]
177642
177567
-
Ala
GGC
[ENA]
¡û
>C211093611
CP053381
Gammaproteobacteria
Halomonas sp. MCCC 1A11059 [CP053381]
1372933
1373008
+
Ala
GGC
-
¡û
>C211093676
CP053382
Gammaproteobacteria
Halomonas sp. MCCC 1A13316 [CP053382]
1418150
1418225
+
Ala
GGC
-
¡û
>C211093741
CP053383
Gammaproteobacteria
Halomonas sp. MCCC 1A13718 [CP053383]
1513321
1513396
+
Ala
GGC
-
¡û
>W2110701703
JAIVAB010000001
Gammaproteobacteria
Halomonas denitrificans AmN35-1 [JAIVAB]
38353
38428
+
Ala
GGC
[ENA]
¡û
>C211206865
CP065435
Gammaproteobacteria
Halomonas campisalis SS10-MC5 [CP065435]
1473570
1473645
+
Ala
GGC
-
¡û
>W1510071599
CDGR01000120
Gammaproteobacteria
Halomonas salina B6 [CDGR]
3688
3763
+
Ala
GGC
[ENA]
¡û
>W2110761533
QTKW01000009
Gammaproteobacteria
Halomonas litopenaei LZD012 [QTKW]
160450
160375
-
Ala
GGC
[ENA]
¡û
>C231421434
CP099965
Gammaproteobacteria
Halomonas sp. DN3 [CP099965]
3294530
3294455
-
Ala
GGC
-
¡û
>C231426046
CP100360
Gammaproteobacteria
Halomonas sp. 3H [CP100360]
1083136
1083211
+
Ala
GGC
-
¡û
>C231507294
CP107007
Gammaproteobacteria
Halomonas sp. GD1P12 [CP107007]
1074616
1074691
+
Ala
GGC
-
¡û
>C231507381
CP107008
Gammaproteobacteria
Halomonas sp. M4R1S46 [CP107008]
2734082
2734007
-
Ala
GGC
-
¡û
>C231507423
CP107009
Gammaproteobacteria
Halomonas sp. LR3S48 [CP107009]
1532220
1532295
+
Ala
GGC
-
¡û
>C231637908
CP121193
Gammaproteobacteria
Halomonas sp. CKK8 [CP121193]
2698117
2698042
-
Ala
GGC
-
¡û
>C241065054
CP042382
Gammaproteobacteria
Pistricoccus aurantiacus CBA4606 [CP042382]
2107935
2108010
+
Ala
GGC
-
¡û
>C241079416
CP043420
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [CP043420]
1324081
1324156
+
Ala
GGC
-
¡û
>C241096230
CP045417
Gammaproteobacteria
Halomonas sp. THAF5a [CP045417]
1001897
1001972
+
Ala
GGC
-
¡û
>C241321520
CP134865
Gammaproteobacteria
Halomonas sp. PAMB 3232 [CP134865]
2613688
2613613
-
Ala
GGC
-
¡û
>C241321581
CP134866
Gammaproteobacteria
Halomonas sp. PAMB 3264 [CP134866]
2642672
2642597
-
Ala
GGC
-
¡û
>W1511319673
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
947006
946931
-
Ala
GGC
[ENA]
¡û
>W1511518466
JXYB01000044
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
137086
137011
-
Ala
GGC
[ENA]
¡û
>C161051014
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
1257010
1257085
+
Ala
GGC
-
¡û
>W121123940
BAEU01000098
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
1992
2067
+
Ala
GGC
[ENA]
¡û
>W1610906002
LSBP01000010
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
108787
108862
+
Ala
GGC
[ENA]
¡û
>W1710519393
FNES01000001
Gammaproteobacteria
Halomonas gudaonensis [FNES]
72985
73060
+
Ala
GGC
[ENA]
¡û
>W1710524551
FNIV01000001
Gammaproteobacteria
Halomonas shengliensis [FNIV]
571546
571621
+
Ala
GGC
[ENA]
¡û
>W1710533738
FNRJ01000002
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
277741
277666
-
Ala
GGC
[ENA]
¡û
>W1710539167
FNVC01000017
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
62318
62393
+
Ala
GGC
[ENA]
¡û
>W1710544883
FOBC01000017
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
88182
88257
+
Ala
GGC
[ENA]
¡û
>W1710558481
FOLY01000001
Gammaproteobacteria
Kushneria avicenniae [FOLY]
595582
595507
-
Ala
GGC
[ENA]
¡û
>W1710577177
FPAQ01000007
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
5543
5618
+
Ala
GGC
[ENA]
¡û
>W1710591881
FRCA01000017
Gammaproteobacteria
Halomonas cupida [FRCA]
47705
47630
-
Ala
GGC
[ENA]
¡û
>W1710596373
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
240990
240915
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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