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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271387 (96 seq.)
>W131010421
AHYM01000005
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
43023
43099
+
Arg
CCT
[ENA]
¡û
>W131037506
AMFD01000007
Bacillota
Lactococcus garvieae I113 [AMFD]
97958
98032
+
Arg
CCT
[ENA]
¡û
>W131037567
AMFE01000063
Bacillota
Lactococcus garvieae Tac2 [AMFE]
42804
42880
+
Arg
CCT
[ENA]
¡û
>W131044491
AMQS01000013
Bacillota
Lactococcus garvieae DCC43 [AMQS]
50267
50343
+
Arg
CCT
[ENA]
¡û
>W1711006238
LQOE01000014
Bacillota
Lactococcus sp. DD01 [LQOE]
2032
1958
-
Arg
CCT
[ENA]
¡û
>W1711228311
LXWL01000005
Bacillota
Lactococcus garvieae [LXWL]
77212
77286
+
Arg
CCT
[ENA]
¡û
>W131202451
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
874239
874315
+
Arg
CCT
[ENA]
¡û
>W1711744866
MUIZ01000004
Bacillota
Lactococcus petauri 159469 [MUIZ]
101631
101557
-
Arg
CCT
[ENA]
¡û
>W1711942773
NBBK01000008
Bacillota
Lactococcus garvieae [NBBK]
213286
213210
-
Arg
CCT
[ENA]
¡û
>WENV180182266
OAWO01003419
[OAWO] human gut metagenome; faeces
176
102
-
Arg
CCT
[ENA]
¡û
>WENV180454917
OBXO01000135
[OBXO] human gut metagenome; faeces
13901
13827
-
Arg
CCT
[ENA]
¡û
>W141096243
AVFE01000064
Bacillota
Lactococcus garvieae TRF1 [AVFE]
3982
4058
+
Arg
CCT
[ENA]
¡û
>W141238095
BBJW01000019
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
42827
42903
+
Arg
CCT
[ENA]
¡û
>WENV182517962
OIWP01000048
[OIWP] human gut metagenome; faeces
24060
23986
-
Arg
CCT
[ENA]
¡û
>WENV182619557
OJKH01023598
[OJKH] metagenome; faeces
321
247
-
Arg
CCT
[ENA]
¡û
>WENV183180191
OLPH01092506
[OLPH] human gut metagenome; faeces
222
296
+
Arg
CCT
[ENA]
¡û
>WENV183276615
OLRZ01014074
[OLRZ] human gut metagenome; faeces
1471
1397
-
Arg
CCT
[ENA]
¡û
>WENV183511298
OMJG01000014
[OMJG] food metagenome; Cotija cheese
24060
23986
-
Arg
CCT
[ENA]
¡û
>WENV170547764
CXTS01000446
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
1090
1164
+
Arg
CCT
[ENA]
¡û
>WENV170548310
CXUD01001111
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
853
927
+
Arg
CCT
[ENA]
¡û
>WENV170549763
CXVH01002843
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
261
187
-
Arg
CCT
[ENA]
¡û
>WENV170549814
CXVI01001621
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
396
472
+
Arg
CCT
[ENA]
¡û
>C181001731
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1895129
1895055
-
Arg
CCT
-
¡û
>C191044561
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
710341
710266
-
Arg
CCT
-
¡û
>W1910583247
JXJV01000015
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
6400
6325
-
Arg
CCT
[ENA]
¡û
>W1910641583
LTDA01000026
Bacillota
Lactococcus garvieae KS1546 [LTDA]
165656
165730
+
Arg
CCT
[ENA]
¡û
>W1810907559
QVHV01000004
Bacillota
Lactococcus petauri AM13-9 [QVHV]
26285
26211
-
Arg
CCT
[ENA]
¡û
>W2010145320
BLXU01000005
Bacillota
Lactococcus garvieae lg38 [BLXU]
113221
113146
-
Arg
CCT
[ENA]
¡û
>W2010259176
CABJEF020000004
Bacillota
Lactococcus garvieae [CABJEF]
26285
26211
-
Arg
CCT
[ENA]
¡û
>W2010632759
JABTTD010000005
Bacillota
Lactococcus petauri LZys1 [JABTTD]
24238
24164
-
Arg
CCT
[ENA]
¡û
>W2010762965
JXJV01000015
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
6400
6325
-
Arg
CCT
[ENA]
¡û
>W2010786209
LTDA01000026
Bacillota
Lactococcus garvieae KS1546 [LTDA]
165656
165730
+
Arg
CCT
[ENA]
¡û
>W2011490941
RSFD01000034
Bacillota
Lactococcus garvieae RTCLI04 [RSFD]
4661
4586
-
Arg
CCT
[ENA]
¡û
>W2011543951
SDHG01000002
Bacillota
Lactococcus petauri DB43829 [SDHG]
350440
350514
+
Arg
CCT
[ENA]
¡û
>W2011544009
SDHH01000003
Bacillota
Lactococcus garvieae TILSE6 [SDHH]
286529
286454
-
Arg
CCT
[ENA]
¡û
>W2011544050
SDHI01000001
Bacillota
Lactococcus petauri DB22928 [SDHI]
1327995
1328069
+
Arg
CCT
[ENA]
¡û
>W2011544107
SDHJ01000010
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
25800
25726
-
Arg
CCT
[ENA]
¡û
>W2011544150
SDHK01000007
Bacillota
Lactococcus petauri DB44798 [SDHK]
71802
71876
+
Arg
CCT
[ENA]
¡û
>W2011544210
SDHL01000006
Bacillota
Lactococcus petauri FISH1 [SDHL]
71680
71754
+
Arg
CCT
[ENA]
¡û
>W2011544261
SDHM01000004
Bacillota
Lactococcus petauri GRT2 [SDHM]
71620
71546
-
Arg
CCT
[ENA]
¡û
>W2011544301
SDHN01000004
Bacillota
Lactococcus garvieae CT2 [SDHN]
154698
154772
+
Arg
CCT
[ENA]
¡û
>W2011544352
SDHO01000003
Bacillota
Lactococcus garvieae FISHB [SDHO]
67729
67803
+
Arg
CCT
[ENA]
¡û
>W2011544402
SDHP01000003
Bacillota
Lactococcus garvieae TILSE2 [SDHP]
287313
287238
-
Arg
CCT
[ENA]
¡û
>W2011544439
SDHQ01000002
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
154674
154748
+
Arg
CCT
[ENA]
¡û
>W2011602717
SIVY01000023
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
64864
64938
+
Arg
CCT
[ENA]
¡û
>W2012206262
VXKD01000014
Bacillota
Lactococcus garvieae subsp. garvieae CCUG 32208T [VXKD]
6496
6421
-
Arg
CCT
[ENA]
¡û
>W2110068683
BOVO01000020
Bacillota
Lactococcus garvieae subsp. bovis LMG 30663 [BOVO]
17227
17301
+
Arg
CCT
[ENA]
¡û
>W2110068721
BOVP01000003
Bacillota
Lactococcus formosensis NBRC 109475 [BOVP]
199929
199855
-
Arg
CCT
[ENA]
¡û
>W2110344973
JADMXE010000010
Bacillota
Lactococcus garvieae 1001287H_170206_H11 [JADMXE]
42958
43033
+
Arg
CCT
[ENA]
¡û
>W2110368992
JADPGL010000004
Bacillota
Lactococcus petauri 1001095IJ_161003_C7 [JADPGL]
191280
191354
+
Arg
CCT
[ENA]
¡û
>W2110369584
JADPHA010000003
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
193203
193277
+
Arg
CCT
[ENA]
¡û
>W2110437332
JAEOAS010000010
Bacillota
Lactococcus petauri H10 [JAEOAS]
30807
30733
-
Arg
CCT
[ENA]
¡û
>W2110583792
JAGYXD010000005
Bacillota
Lactococcus garvieae INF126 [JAGYXD]
21478
21404
-
Arg
CCT
[ENA]
¡û
>W2110583840
JAGYXE010000010
Bacillota
Lactococcus petauri INF110 [JAGYXE]
17059
16985
-
Arg
CCT
[ENA]
¡û
>C211210934
CP065637
Bacillota
Lactococcus garvieae FDAARGOS_929 [CP065637]
1056797
1056722
-
Arg
CCT
-
¡û
>C211212697
CP065691
Bacillota
Lactococcus garvieae FDAARGOS_893 [CP065691]
1000691
1000766
+
Arg
CCT
-
¡û
>C211219736
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
1719940
1719866
-
Arg
CCT
-
¡û
>C211221963
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
1349425
1349499
+
Arg
CCT
-
¡û
>C211222313
CP066087
Bacillota
Lactococcus garvieae FDAARGOS_1063 [CP066087]
1815624
1815550
-
Arg
CCT
-
¡û
>C211289026
CP071285
Bacillota
Lactococcus garvieae LG728 [CP071285]
1319231
1319306
+
Arg
CCT
-
¡û
>C211289126
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
687932
687857
-
Arg
CCT
-
¡û
>C211289143
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
1334448
1334522
+
Arg
CCT
-
¡û
>C211289204
CP071295
Bacillota
Lactococcus sp. LG1267 [CP071295]
1895206
1895280
+
Arg
CCT
-
¡û
>C211289260
CP071300
Bacillota
Lactococcus sp. LG592 [CP071300]
1456278
1456352
+
Arg
CCT
-
¡û
>C211289309
CP071301
Bacillota
Lactococcus sp. LG606 [CP071301]
1011669
1011743
+
Arg
CCT
-
¡û
>C211408100
CP084377
Bacillota
Lactococcus garvieae Lg-Granada [CP084377]
139744
139669
-
Arg
CCT
-
¡û
>C231024829
AP026069
Bacillota
Lactococcus garvieae MS210922A [AP026069]
1307707
1307782
+
Arg
CCT
-
¡û
>C231034127
CP028386
Bacillota
Lactococcus garvieae IBB3403 [CP028386]
1483177
1483251
+
Arg
CCT
-
¡û
>W1510060231
CCXC01000002
Bacillota
Lactococcus garvieae M14 [CCXC]
365230
365304
+
Arg
CCT
[ENA]
¡û
>W1510060348
CCXF01000002
Bacillota
Lactococcus garvieae MT14 [CCXF]
365230
365304
+
Arg
CCT
[ENA]
¡û
>C231227676
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
1382385
1382459
+
Arg
CCT
-
¡û
>C231227735
CP086395
Bacillota
Lactococcus formosensis I4/6O [CP086395]
1567735
1567809
+
Arg
CCT
-
¡û
>C231227795
CP086401
Bacillota
Lactococcus petauri LG4 [CP086401]
1562268
1562342
+
Arg
CCT
-
¡û
>C231230513
CP086595
Bacillota
Lactococcus petauri LG26 [CP086595]
1762445
1762519
+
Arg
CCT
-
¡û
>C231353068
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
1377768
1377842
+
Arg
CCT
-
¡û
>W2110761221
QSNN01000005
Bacillota
Lactococcus petauri RJAA.1 [QSNN]
89748
89674
-
Arg
CCT
[ENA]
¡û
>C231519421
CP109635
Bacillota
Lactococcus garvieae Alexii-11_2 [CP109635]
928903
928828
-
Arg
CCT
-
¡û
>C231519473
CP109636
Bacillota
Lactococcus garvieae Alexii-6_2 [CP109636]
820504
820429
-
Arg
CCT
-
¡û
>C231627988
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
1460668
1460742
+
Arg
CCT
-
¡û
>W2110783074
WIVG01000015
Bacillota
Lactococcus garvieae EP01 [WIVG]
25148
25223
+
Arg
CCT
[ENA]
¡û
>C241103669
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
1361931
1362005
+
Arg
CCT
-
¡û
>C241278490
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
1539100
1539174
+
Arg
CCT
-
¡û
>C242000023
AP027275
Bacillota
Lactococcus formosensis MS200408A [AP027275]
1304294
1304368
+
Arg
CCT
-
¡û
>C11112731
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
691889
691813
-
Arg
CCT
[Ensembl]
¡û
>C11112791
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
709330
709254
-
Arg
CCT
[Ensembl]
¡û
>W1511314670
JPUJ01000006
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
19484
19410
-
Arg
CCT
[ENA]
¡û
>W11157472
AFCC01000072
Bacillota
Lactococcus garvieae 21881 [AFCC]
44164
44238
+
Arg
CCT
[ENA]
¡û
>W11157509
AFCD01000047
Bacillota
Lactococcus garvieae 8831 [AFCD]
21419
21493
+
Arg
CCT
[ENA]
¡û
>W11162759
AFHF01000014
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
103626
103702
+
Arg
CCT
[ENA]
¡û
>W121016350
AGQX01000015
Bacillota
Lactococcus garvieae TB25 [AGQX]
51862
51788
-
Arg
CCT
[ENA]
¡û
>W121016399
AGQY01000065
Bacillota
Lactococcus garvieae LG9 [AGQY]
3413
3337
-
Arg
CCT
[ENA]
¡û
>W121081218
AKFO01000017
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
21074
21000
-
Arg
CCT
[ENA]
¡û
>W1610856888
LQOE01000014
Bacillota
Lactococcus sp. DD01 [LQOE]
2032
1958
-
Arg
CCT
[ENA]
¡û
>W1611012228
LXWL01000005
Bacillota
Lactococcus garvieae [LXWL]
77212
77286
+
Arg
CCT
[ENA]
¡û
>WENV085195
BABB01013102
Gut microbiome of Human (healthy human sample In-A, Adult, Male)
357
280
-
Arg
CCT
[ENA]
>W1710568161
FOTJ01000001
Bacillota
Lactococcus garvieae [FOTJ]
440788
440864
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK