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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271388 (97 seq.)
>W1711006276
LQOE01000118
Bacillota
Lactococcus sp. DD01 [LQOE]
118
193
+
Asn
GTT
[ENA]
¡û
>W1711228334
LXWL01000012
Bacillota
Lactococcus garvieae [LXWL]
26033
25958
-
Asn
GTT
[ENA]
¡û
>W1711744895
MUIZ01000013
Bacillota
Lactococcus petauri 159469 [MUIZ]
19414
19339
-
Asn
GTT
[ENA]
¡û
>W1711942778
NBBK01000011
Bacillota
Lactococcus garvieae [NBBK]
139
211
+
Asn
GTT
[ENA]
¡û
>W131010458
AHYM01000016
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
22939
22864
-
Asn
GTT
[ENA]
¡û
>W131037524
AMFD01000022
Bacillota
Lactococcus garvieae I113 [AMFD]
138
213
+
Asn
GTT
[ENA]
¡û
>W131037564
AMFE01000041
Bacillota
Lactococcus garvieae Tac2 [AMFE]
19145
19070
-
Asn
GTT
[ENA]
¡û
>W131044508
AMQS01000026
Bacillota
Lactococcus garvieae DCC43 [AMQS]
24347
24275
-
Asn
GTT
[ENA]
¡û
>W131202414
ASWT01000001
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
534
609
+
Asn
GTT
[ENA]
¡û
>WENV180182224
OAWO01002420
[OAWO] human gut metagenome; faeces
91
163
+
Asn
GTT
[ENA]
¡û
>WENV180455452
OBXO01004312
[OBXO] human gut metagenome; faeces
172
244
+
Asn
GTT
[ENA]
¡û
>W141096208
AVFE01000017
Bacillota
Lactococcus garvieae TRF1 [AVFE]
520
595
+
Asn
GTT
[ENA]
¡û
>W141238108
BBJW01000026
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
117
192
+
Asn
GTT
[ENA]
¡û
>WENV182518578
OIWP01001241
[OIWP] human gut metagenome; faeces
93
165
+
Asn
GTT
[ENA]
¡û
>WENV183179947
OLPH01033208
[OLPH] human gut metagenome; faeces
90
162
+
Asn
GTT
[ENA]
¡û
>WENV183276639
OLRZ01015391
[OLRZ] human gut metagenome; faeces
931
1003
+
Asn
GTT
[ENA]
¡û
>WENV183511595
OMJG01000924
[OMJG] food metagenome; Cotija cheese
93
165
+
Asn
GTT
[ENA]
¡û
>WENV170002127
AGFT01121496
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
342
267
-
Asn
GTT
[ENA]
¡û
>WENV170547747
CXTS01000084
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
276
351
+
Asn
GTT
[ENA]
¡û
>WENV170547934
CXTV01000376
[CXTV] Human gut metagenome genome assembly, contig: mB2_contig000833.; ENVO:feces
267
192
-
Asn
GTT
[ENA]
¡û
>WENV170548294
CXUD01000202
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
2313
2238
-
Asn
GTT
[ENA]
¡û
>WENV170549679
CXVH01000054
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
523
598
+
Asn
GTT
[ENA]
¡û
>WENV170549775
CXVI01000212
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
381
456
+
Asn
GTT
[ENA]
¡û
>C181001692
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1219031
1219103
+
Asn
GTT
-
¡û
>C191044522
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1959451
1959379
-
Asn
GTT
-
¡û
>W1910583252
JXJV01000020
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
148
220
+
Asn
GTT
[ENA]
¡û
>W1910641582
LTDA01000021
Bacillota
Lactococcus garvieae KS1546 [LTDA]
161
233
+
Asn
GTT
[ENA]
¡û
>W1810907577
QVHV01000015
Bacillota
Lactococcus petauri AM13-9 [QVHV]
91
163
+
Asn
GTT
[ENA]
¡û
>W2010145348
BLXU01000021
Bacillota
Lactococcus garvieae lg38 [BLXU]
19250
19178
-
Asn
GTT
[ENA]
¡û
>W2010259194
CABJEF020000015
Bacillota
Lactococcus garvieae [CABJEF]
91
163
+
Asn
GTT
[ENA]
¡û
>W2010632792
JABTTD010000016
Bacillota
Lactococcus petauri LZys1 [JABTTD]
19307
19235
-
Asn
GTT
[ENA]
¡û
>W2010762970
JXJV01000020
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
148
220
+
Asn
GTT
[ENA]
¡û
>W2010786208
LTDA01000021
Bacillota
Lactococcus garvieae KS1546 [LTDA]
161
233
+
Asn
GTT
[ENA]
¡û
>W2011490910
RSFD01000020
Bacillota
Lactococcus garvieae RTCLI04 [RSFD]
225
297
+
Asn
GTT
[ENA]
¡û
>W2011543990
SDHG01000013
Bacillota
Lactococcus petauri DB43829 [SDHG]
19230
19158
-
Asn
GTT
[ENA]
¡û
>W2011544025
SDHH01000012
Bacillota
Lactococcus garvieae TILSE6 [SDHH]
30140
30068
-
Asn
GTT
[ENA]
¡û
>W2011544082
SDHI01000005
Bacillota
Lactococcus petauri DB22928 [SDHI]
194
266
+
Asn
GTT
[ENA]
¡û
>W2011544129
SDHJ01000021
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
18888
18816
-
Asn
GTT
[ENA]
¡û
>W2011544182
SDHK01000019
Bacillota
Lactococcus petauri DB44798 [SDHK]
194
266
+
Asn
GTT
[ENA]
¡û
>W2011544231
SDHL01000021
Bacillota
Lactococcus petauri FISH1 [SDHL]
19333
19261
-
Asn
GTT
[ENA]
¡û
>W2011544283
SDHM01000018
Bacillota
Lactococcus petauri GRT2 [SDHM]
194
266
+
Asn
GTT
[ENA]
¡û
>W2011544333
SDHN01000017
Bacillota
Lactococcus garvieae CT2 [SDHN]
18895
18823
-
Asn
GTT
[ENA]
¡û
>W2011544382
SDHO01000020
Bacillota
Lactococcus garvieae FISHB [SDHO]
18876
18804
-
Asn
GTT
[ENA]
¡û
>W2011544425
SDHP01000011
Bacillota
Lactococcus garvieae TILSE2 [SDHP]
194
266
+
Asn
GTT
[ENA]
¡û
>W2011544468
SDHQ01000023
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
93
165
+
Asn
GTT
[ENA]
¡û
>W2011602725
SIVY01000033
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
19335
19263
-
Asn
GTT
[ENA]
¡û
>W2012206293
VXKD01000045
Bacillota
Lactococcus garvieae subsp. garvieae CCUG 32208T [VXKD]
21896
21824
-
Asn
GTT
[ENA]
¡û
>W2110068696
BOVO01000028
Bacillota
Lactococcus garvieae subsp. bovis LMG 30663 [BOVO]
194
266
+
Asn
GTT
[ENA]
¡û
>W2110068750
BOVP01000013
Bacillota
Lactococcus formosensis NBRC 109475 [BOVP]
194
266
+
Asn
GTT
[ENA]
¡û
>W2110344978
JADMXE010000016
Bacillota
Lactococcus garvieae 1001287H_170206_H11 [JADMXE]
19263
19191
-
Asn
GTT
[ENA]
¡û
>W2110369028
JADPGL010000013
Bacillota
Lactococcus petauri 1001095IJ_161003_C7 [JADPGL]
19260
19188
-
Asn
GTT
[ENA]
¡û
>W2110369618
JADPHA010000017
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
19334
19262
-
Asn
GTT
[ENA]
¡û
>W2110437346
JAEOAS010000018
Bacillota
Lactococcus petauri H10 [JAEOAS]
117
189
+
Asn
GTT
[ENA]
¡û
>W2110583816
JAGYXD010000020
Bacillota
Lactococcus garvieae INF126 [JAGYXD]
19251
19179
-
Asn
GTT
[ENA]
¡û
>W2110583854
JAGYXE010000039
Bacillota
Lactococcus petauri INF110 [JAGYXE]
244
316
+
Asn
GTT
[ENA]
¡û
>C211210891
CP065637
Bacillota
Lactococcus garvieae FDAARGOS_929 [CP065637]
316580
316652
+
Asn
GTT
-
¡û
>C211212713
CP065691
Bacillota
Lactococcus garvieae FDAARGOS_893 [CP065691]
1761442
1761370
-
Asn
GTT
-
¡û
>C211219695
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
1002012
1002084
+
Asn
GTT
-
¡û
>C211221975
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
1995180
1995108
-
Asn
GTT
-
¡û
>C211222273
CP066087
Bacillota
Lactococcus garvieae FDAARGOS_1063 [CP066087]
1109480
1109552
+
Asn
GTT
-
¡û
>C211289030
CP071285
Bacillota
Lactococcus garvieae LG728 [CP071285]
1954842
1954770
-
Asn
GTT
-
¡û
>C211289089
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
1899544
1899472
-
Asn
GTT
-
¡û
>C211289147
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
1990182
1990110
-
Asn
GTT
-
¡û
>C211289210
CP071295
Bacillota
Lactococcus sp. LG1267 [CP071295]
455217
455145
-
Asn
GTT
-
¡û
>C211289264
CP071300
Bacillota
Lactococcus sp. LG592 [CP071300]
2113871
2113799
-
Asn
GTT
-
¡û
>C211289326
CP071301
Bacillota
Lactococcus sp. LG606 [CP071301]
1737161
1737089
-
Asn
GTT
-
¡û
>C211408045
CP084377
Bacillota
Lactococcus garvieae Lg-Granada [CP084377]
1579481
1579553
+
Asn
GTT
-
¡û
>C231024833
AP026069
Bacillota
Lactococcus garvieae MS210922A [AP026069]
2000683
2000611
-
Asn
GTT
-
¡û
>C231034131
CP028386
Bacillota
Lactococcus garvieae IBB3403 [CP028386]
2173055
2172983
-
Asn
GTT
-
¡û
>W1510060234
CCXC01000007
Bacillota
Lactococcus garvieae M14 [CCXC]
172
247
+
Asn
GTT
[ENA]
¡û
>W1510060351
CCXF01000007
Bacillota
Lactococcus garvieae MT14 [CCXF]
172
247
+
Asn
GTT
[ENA]
¡û
>C231227680
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
2028136
2028064
-
Asn
GTT
-
¡û
>C231227739
CP086395
Bacillota
Lactococcus formosensis I4/6O [CP086395]
2332572
2332500
-
Asn
GTT
-
¡û
>C231227799
CP086401
Bacillota
Lactococcus petauri LG4 [CP086401]
2445020
2444948
-
Asn
GTT
-
¡û
>C231230517
CP086595
Bacillota
Lactococcus petauri LG26 [CP086595]
2595082
2595010
-
Asn
GTT
-
¡û
>C231353072
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
2099671
2099599
-
Asn
GTT
-
¡û
>W2110761241
QSNN01000023
Bacillota
Lactococcus petauri RJAA.1 [QSNN]
19186
19114
-
Asn
GTT
[ENA]
¡û
>C231519393
CP109635
Bacillota
Lactococcus garvieae Alexii-11_2 [CP109635]
1981818
1981746
-
Asn
GTT
-
¡û
>C231519445
CP109636
Bacillota
Lactococcus garvieae Alexii-6_2 [CP109636]
1979790
1979718
-
Asn
GTT
-
¡û
>C231627992
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
2130239
2130167
-
Asn
GTT
-
¡û
>W2110783094
WIVG01000072
Bacillota
Lactococcus garvieae EP01 [WIVG]
6916
6844
-
Asn
GTT
[ENA]
¡û
>C241103673
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
1991251
1991179
-
Asn
GTT
-
¡û
>C241278494
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
2390421
2390349
-
Asn
GTT
-
¡û
>C242000063
AP027275
Bacillota
Lactococcus formosensis MS200408A [AP027275]
1981641
1981569
-
Asn
GTT
-
¡û
>WENV11102199
AGFT01121496
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
342
267
-
Asn
GTT
[ENA]
¡û
>C11112692
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1943658
1943583
-
Asn
GTT
[Ensembl]
¡û
>C11112752
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1957487
1957412
-
Asn
GTT
[Ensembl]
¡û
>W1511314692
JPUJ01000026
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
19165
19090
-
Asn
GTT
[ENA]
¡û
>W11157474
AFCC01000080
Bacillota
Lactococcus garvieae 21881 [AFCC]
118
193
+
Asn
GTT
[ENA]
¡û
>W11157481
AFCD01000003
Bacillota
Lactococcus garvieae 8831 [AFCD]
955
880
-
Asn
GTT
[ENA]
¡û
>W11162793
AFHF01000024
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
24412
24337
-
Asn
GTT
[ENA]
¡û
>W121016347
AGQX01000002
Bacillota
Lactococcus garvieae TB25 [AGQX]
19226
19151
-
Asn
GTT
[ENA]
¡û
>W121016393
AGQY01000015
Bacillota
Lactococcus garvieae LG9 [AGQY]
19151
19076
-
Asn
GTT
[ENA]
¡û
>W121081193
AKFO01000007
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
19230
19155
-
Asn
GTT
[ENA]
¡û
>W1610856926
LQOE01000118
Bacillota
Lactococcus sp. DD01 [LQOE]
118
193
+
Asn
GTT
[ENA]
¡û
>W1611012251
LXWL01000012
Bacillota
Lactococcus garvieae [LXWL]
26033
25958
-
Asn
GTT
[ENA]
¡û
>W1710568200
FOTJ01000021
Bacillota
Lactococcus garvieae [FOTJ]
431
506
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK