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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271426 (58 seq.)
>W1711262637
LYXZ01000006
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
76399
76474
+
Thr
CGT
[ENA]
¡û
>W1711407965
MGLI01000170
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
2797
2722
-
Thr
CGT
[ENA]
¡û
>W1711407981
MGLM01000457
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
468
393
-
Thr
CGT
[ENA]
¡û
>WENV181371095
OFQU01023875
[OFQU] wastewater metagenome; Exp Tend CN 90WW
588
513
-
Thr
CGT
[ENA]
¡û
>W08010815
ABRU01000015
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
24032
23960
-
Thr
CGT
[ENA]
¡û
>WENV170000074
AERA01005798
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
22460
22535
+
Thr
CGT
[ENA]
¡û
>WENV170557291
CXWL01023153
[CXWL] groundwater metagenome; biofilm material
1784
1709
-
Thr
CGT
[ENA]
¡û
>WENV170566454
FKKE01031243
[FKKE] freshwater metagenome; freshwater
447
522
+
Thr
CGT
[ENA]
¡û
>WENV170576285
FRDC01000308
[FRDC] freshwater metagenome; water
22341
22416
+
Thr
CGT
[ENA]
¡û
>WENV170576403
FRDC01000547
[FRDC] freshwater metagenome; water
24894
24819
-
Thr
CGT
[ENA]
¡û
>WENV170576575
FRDC01000960
[FRDC] freshwater metagenome; water
5626
5551
-
Thr
CGT
[ENA]
¡û
>WENV170578003
FSSH01005558
[FSSH] freshwater metagenome; drinking water
1079
1154
+
Thr
CGT
[ENA]
¡û
>WENV170649465
JRYC01009936
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
4356
4431
+
Thr
CGT
[ENA]
¡û
>WENV170649466
JRYC01009939
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
1757
1682
-
Thr
CGT
[ENA]
¡û
>WENV170650109
JRYD01011724
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
587
662
+
Thr
CGT
[ENA]
¡û
>WENV170652273
JRYH01000474
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
122534
122609
+
Thr
CGT
[ENA]
¡û
>WENV170654764
JRYL01014634
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
1034
959
-
Thr
CGT
[ENA]
¡û
>WENV170655019
JTFN01002144
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
442
367
-
Thr
CGT
[ENA]
¡û
>W141485413
JFZJ01000005
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
8088
8013
-
Thr
CGT
[ENA]
¡û
>C191094024
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
1153035
1152960
-
Thr
CGT
-
¡û
>C191189128
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
3089892
3089967
+
Thr
CGT
-
¡û
>W141712441
JMQR01000035
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
15365
15290
-
Thr
CGT
[ENA]
¡û
>W1910725260
MGLK01000017
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
50274
50199
-
Thr
CGT
[ENA]
¡û
>W1910725286
MGLL01000057
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
4473
4548
+
Thr
CGT
[ENA]
¡û
>W1910744280
MIAJ01000046
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 [MIAJ]
20204
20129
-
Thr
CGT
[ENA]
¡û
>W1810325487
PUEJ01000002
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
343421
343346
-
Thr
CGT
[ENA]
¡û
>W2010724641
JACIDM010000001
Alphaproteobacteria
Brevundimonas lenta DSM 23960 [JACIDM]
585072
584997
-
Thr
CGT
[ENA]
¡û
>W2010858687
MGLK01000017
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
50274
50199
-
Thr
CGT
[ENA]
¡û
>W2010858713
MGLL01000057
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
4473
4548
+
Thr
CGT
[ENA]
¡û
>W2010877712
MIAJ01000046
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 [MIAJ]
20204
20129
-
Thr
CGT
[ENA]
¡û
>W2011481480
RQWJ01000002
Alphaproteobacteria
Brevundimonas sp. LA-55 [RQWJ]
27019
27094
+
Thr
CGT
[ENA]
¡û
>W2011513016
RZNF01000012
Alphaproteobacteria
Rhodomicrobium sp. JA980 [RZNF]
807081
807156
+
Thr
CGT
[ENA]
¡û
>W2011667276
SPDV01000003
Alphaproteobacteria
Sphingomonas sp. 17J27-24 [SPDV]
140841
140766
-
Thr
CGT
[ENA]
¡û
>W2011954342
UXHF01000092
Alphaproteobacteria
Brevundimonas mediterranea [UXHF]
7254
7179
-
Thr
CGT
[ENA]
¡û
>W2012141159
VTOM01000003
Alphaproteobacteria
Jiella sp. R10 [VTOM]
278299
278374
+
Thr
CGT
[ENA]
¡û
>W2012398262
WNJP01000125
Alphaproteobacteria
Sandarakinorhabdus sp. NM-18 [WNJP]
7228
7153
-
Thr
CGT
[ENA]
¡û
>W2110026827
BMIQ01000002
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
717919
717844
-
Thr
CGT
[ENA]
¡û
>W2110429671
JAEMUJ010000116
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [JAEMUJ]
9700
9625
-
Thr
CGT
[ENA]
¡û
>W2110429750
JAEMUK010000078
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JAEMUK]
425
350
-
Thr
CGT
[ENA]
¡û
>W2110555366
JAGIPY010000004
Alphaproteobacteria
Labrys sp. LIt4 [JAGIPY]
205170
205095
-
Thr
CGT
[ENA]
¡û
>W2110600603
JAHFZG010000001
Alphaproteobacteria
Rhodomicrobium sp. Az07 [JAHFZG]
8101
8026
-
Thr
CGT
[ENA]
¡û
>C201133531
CP043489
Alphaproteobacteria
Labrys neptuniae KNU-23 [CP043488, CP043489]
2559687
2559762
+
Thr
CGT
-
¡û
>C201159372
CP045456
Alphaproteobacteria
Brevundimonas sp. Bb-A [CP045456]
3250802
3250877
+
Thr
CGT
-
¡û
>C201217705
CP048751
Alphaproteobacteria
Brevundimonas mediterranea D151-2-6 [CP048751]
937088
937163
+
Thr
CGT
-
¡û
>C211376904
CP080376
Alphaproteobacteria
Brevundimonas sp. PAMC22021 [CP080376]
215551
215626
+
Thr
CGT
-
¡û
>W10112721
ADFF01000048
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
13107
13182
+
Thr
CGT
[ENA]
¡û
>C231388771
CP097649
Alphaproteobacteria
Brevundimonas albigilva TT17 [CP097649]
2467195
2467120
-
Thr
CGT
-
¡û
>C231550743
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
1947428
1947353
-
Thr
CGT
-
¡û
>C231572105
CP116005
Alphaproteobacteria
Sphingosinicella microcystinivorans DMF-3 [CP116005]
2058707
2058632
-
Thr
CGT
-
¡û
>C241261769
CP125860
Alphaproteobacteria
Rhodomicrobium lacus DSM 166 [CP125860]
3401037
3400962
-
Thr
CGT
-
¡û
>W2310022548
BSFD01000002
Alphaproteobacteria
Brevundimonas intermedia VKM B-1499 [BSFD]
709639
709714
+
Thr
CGT
[ENA]
¡û
>W2310026094
BSPC01000005
Alphaproteobacteria
Labrys miyagiensis NBRC 101365 [BSPC]
182173
182098
-
Thr
CGT
[ENA]
¡û
>WENV11100432
AERA01005798
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
22460
22535
+
Thr
CGT
[ENA]
¡û
>W11115948
ADFF01000048
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
13107
13182
+
Thr
CGT
[ENA]
¡û
>C11119024
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
3415611
3415536
-
Thr
CGT
[Ensembl]
¡û
>C161047053
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
3443349
3443424
+
Thr
CGT
[Ensembl]
¡û
>W1611024504
LYXZ01000006
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
76399
76474
+
Thr
CGT
[ENA]
¡û
>W1710576172
FOZV01000001
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
745455
745380
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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