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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271603 (74 seq.)
>W1711125693
LUNP01000005
Alphaproteobacteria
Erythrobacter sp. REDSEA-S22_B4 [LUNP]
970877
970952
+
Thr
TGT
[ENA]
¡û
>W1711125743
LUNQ01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S28_B2 [LUNQ]
43730
43655
-
Thr
TGT
[ENA]
¡û
>W1711125796
LUNR01000007
Alphaproteobacteria
Erythrobacter sp. REDSEA-S34_B3 [LUNR]
43852
43777
-
Thr
TGT
[ENA]
¡û
>W1711125825
LUNS01000068
Alphaproteobacteria
Erythrobacter sp. REDSEA-S36_B6 [LUNS]
20501
20576
+
Thr
TGT
[ENA]
¡û
>W1711125842
LUNT01000008
Alphaproteobacteria
Erythrobacter sp. REDSEA-S37_B3 [LUNT]
8327
8402
+
Thr
TGT
[ENA]
¡û
>W1711125913
LUNU01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S40_B1 [LUNU]
43852
43777
-
Thr
TGT
[ENA]
¡û
>W1711125956
LUNV01000021
Alphaproteobacteria
Erythrobacter sp. REDSEA-S41_B1 [LUNV]
232774
232849
+
Thr
TGT
[ENA]
¡û
>W1711125986
LUNW01000004
Alphaproteobacteria
Erythrobacter sp. REDSEA-S42_B5 [LUNW]
43852
43777
-
Thr
TGT
[ENA]
¡û
>W1711126030
LUNX01000014
Alphaproteobacteria
Erythrobacter sp. REDSEA-S43_B2 [LUNX]
43773
43698
-
Thr
TGT
[ENA]
¡û
>W1711126081
LUNY01000150
Alphaproteobacteria
Erythrobacter sp. REDSEA-S45_B7 [LUNY]
2302
2377
+
Thr
TGT
[ENA]
¡û
>W1711176200
LWFF01000319
Alphaproteobacteria
Erythrobacter sp. HI0063 [LWFF]
2923
2848
-
Thr
TGT
[ENA]
¡û
>w012909
AAMW01000001
Alphaproteobacteria
Erythrobacter sp. NAP1 [AAMW]
273648
273576
-
Thr
TGT
[ENA]
¡û
>WENV182549577
OJBY01002526
[OJBY] seawater metagenome; Sea water
3054
2979
-
Thr
TGT
[ENA]
¡û
>W141273311
CCSI01000003
Alphaproteobacteria
Qipengyuania vulgaris [CCSI]
189260
189335
+
Thr
TGT
[ENA]
¡û
>WENV170228792
CEQG01041772
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
176
101
-
Thr
TGT
[ENA]
¡û
>WENV170266173
CERE01046639
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
298
373
+
Thr
TGT
[ENA]
¡û
>WENV170592577
FUFK010810872
[FUFK] metagenome; unknown
1190
1265
+
Thr
TGT
[ENA]
¡û
>WENV170727330
LULE01000001
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
43852
43777
-
Thr
TGT
[ENA]
¡û
>WENV170728658
LULF01000068
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
3810
3735
-
Thr
TGT
[ENA]
¡û
>WENV170729138
LULF01010386
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
291
366
+
Thr
TGT
[ENA]
¡û
>WENV170730016
LULG01007235
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1579
1654
+
Thr
TGT
[ENA]
¡û
>WENV170730563
LULH01000334
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
8327
8402
+
Thr
TGT
[ENA]
¡û
>WENV170731434
LULI01000297
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
20501
20576
+
Thr
TGT
[ENA]
¡û
>WENV170733109
LULJ01005394
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
3
78
+
Thr
TGT
[ENA]
¡û
>WENV170733110
LULJ01005394
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
402
327
-
Thr
TGT
[ENA]
¡û
>WENV170733679
LULK01000001
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
43852
43777
-
Thr
TGT
[ENA]
¡û
>WENV170735777
LULL01012343
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
251
176
-
Thr
TGT
[ENA]
¡û
>WENV170737257
LULN01008754
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
100
25
-
Thr
TGT
[ENA]
¡û
>WENV170737412
LULO01000038
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
123123
123198
+
Thr
TGT
[ENA]
¡û
>WENV170739208
LULQ01000001
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
43730
43655
-
Thr
TGT
[ENA]
¡û
>WENV170743388
LULW01000001
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
970877
970952
+
Thr
TGT
[ENA]
¡û
>WENV170758794
LUMS01000001
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
232774
232849
+
Thr
TGT
[ENA]
¡û
>WENV170759433
LUMS01021651
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
686
761
+
Thr
TGT
[ENA]
¡û
>WENV170759554
LUMT01000006
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
43852
43777
-
Thr
TGT
[ENA]
¡û
>WENV170760735
LUMU01000013
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
43773
43698
-
Thr
TGT
[ENA]
¡û
>WENV170762234
LUMW01002710
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
2302
2377
+
Thr
TGT
[ENA]
¡û
>WENV170762496
LUMW01011852
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
355
430
+
Thr
TGT
[ENA]
¡û
>WENV170931750
MDTG01190348
[MDTG] marine metagenome; seawater
2386
2461
+
Thr
TGT
[ENA]
¡û
>WENV170937311
MDTG01289591
[MDTG] marine metagenome; seawater
1912
1837
-
Thr
TGT
[ENA]
¡û
>C181054542
CP021912
Alphaproteobacteria
Erythrobacter sp. KY5 [CP021912]
1368732
1368657
-
Thr
TGT
-
¡û
>W141700088
JMIV01000001
Alphaproteobacteria
Erythrobacter sp. JL475 [JMIV]
457406
457331
-
Thr
TGT
[ENA]
¡û
>W1911767951
QXFL01000002
Alphaproteobacteria
Erythrobacter sp. V18 [QXFL]
436533
436608
+
Thr
TGT
[ENA]
¡û
>W1911798275
QYOS01000018
Alphaproteobacteria
Erythrobacter odishensis KCTC 23981 [QYOS]
46795
46720
-
Thr
TGT
[ENA]
¡û
>W2010302749
CABVLF010000004
Alphaproteobacteria
Erythrobacter sp. EC-HK427 [CABVLF]
55349
55424
+
Thr
TGT
[ENA]
¡û
>W2011325473
QXFL01000002
Alphaproteobacteria
Erythrobacter sp. V18 [QXFL]
436533
436608
+
Thr
TGT
[ENA]
¡û
>W2011343243
QYOS01000018
Alphaproteobacteria
Erythrobacter odishensis KCTC 23981 [QYOS]
46795
46720
-
Thr
TGT
[ENA]
¡û
>W2012438682
WTYD01000001
Alphaproteobacteria
Erythrobacter pelagi JCM 17468 [WTYD]
1627594
1627669
+
Thr
TGT
[ENA]
¡û
>W2012439145
WTYN01000001
Alphaproteobacteria
Altererythrobacter oceanensis MCCC 1A09965 [WTYN]
1008258
1008333
+
Thr
TGT
[ENA]
¡û
>W2110030283
BMLK01000010
Alphaproteobacteria
Novosphingobium indicum CGMCC 1.6784 [BMLK]
70269
70194
-
Thr
TGT
[ENA]
¡û
>W2110547224
JAGHQR010000002
Alphaproteobacteria
Erythrobacter sp. A6_0 [JAGHQR]
224917
224992
+
Thr
TGT
[ENA]
¡û
>W2110677756
JAIGNJ010000001
Alphaproteobacteria
Qipengyuania sp. 1NDH10 [JAIGNJ]
418067
417992
-
Thr
TGT
[ENA]
¡û
>W2110677805
JAIGNK010000002
Alphaproteobacteria
Qipengyuania sp. 1NDH17 [JAIGNK]
474822
474897
+
Thr
TGT
[ENA]
¡û
>W2110677950
JAIGNN010000002
Alphaproteobacteria
Qipengyuania sp. 6B39 [JAIGNN]
647655
647730
+
Thr
TGT
[ENA]
¡û
>W2110678140
JAIGNR010000004
Alphaproteobacteria
Qipengyuania sp. GH29 [JAIGNR]
279063
279138
+
Thr
TGT
[ENA]
¡û
>C201224653
CP049259
Alphaproteobacteria
Altererythrobacter sp. BO-6 [CP049259]
2633165
2633090
-
Thr
TGT
-
¡û
>C231287051
CP090949
Alphaproteobacteria
Erythrobacter aurantius C5 [CP090949]
1493404
1493329
-
Thr
TGT
-
¡û
>C231317780
CP092471
Alphaproteobacteria
Qipengyuania sp. PHS-Z21 [CP092471]
1230226
1230152
-
Thr
TGT
-
¡û
>C231555494
CP114054
Alphaproteobacteria
Aurantiacibacter sp. MUD11 [CP114054]
1092688
1092763
+
Thr
TGT
-
¡û
>C241010397
AP027262
Alphaproteobacteria
Erythrobacter sp. Dej080120_24 [AP027262]
1396150
1396075
-
Thr
TGT
-
¡û
>C241162680
CP053921
Alphaproteobacteria
Erythrobacter mangrovi EB310 [CP053921]
232146
232221
+
Thr
TGT
-
¡û
>W1511398006
JTDI01000002
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
515279
515204
-
Thr
TGT
[ENA]
¡û
>W1610071231
BCTX01000024
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
59295
59220
-
Thr
TGT
[ENA]
¡û
>W1610936626
LUNP01000005
Alphaproteobacteria
Erythrobacter sp. REDSEA-S22_B4 [LUNP]
970877
970952
+
Thr
TGT
[ENA]
¡û
>W1610936676
LUNQ01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S28_B2 [LUNQ]
43730
43655
-
Thr
TGT
[ENA]
¡û
>W1610936729
LUNR01000007
Alphaproteobacteria
Erythrobacter sp. REDSEA-S34_B3 [LUNR]
43852
43777
-
Thr
TGT
[ENA]
¡û
>W1610936758
LUNS01000068
Alphaproteobacteria
Erythrobacter sp. REDSEA-S36_B6 [LUNS]
20501
20576
+
Thr
TGT
[ENA]
¡û
>W1610936775
LUNT01000008
Alphaproteobacteria
Erythrobacter sp. REDSEA-S37_B3 [LUNT]
8327
8402
+
Thr
TGT
[ENA]
¡û
>W1610936846
LUNU01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S40_B1 [LUNU]
43852
43777
-
Thr
TGT
[ENA]
¡û
>W1610936889
LUNV01000021
Alphaproteobacteria
Erythrobacter sp. REDSEA-S41_B1 [LUNV]
232774
232849
+
Thr
TGT
[ENA]
¡û
>W1610936919
LUNW01000004
Alphaproteobacteria
Erythrobacter sp. REDSEA-S42_B5 [LUNW]
43852
43777
-
Thr
TGT
[ENA]
¡û
>W1610936963
LUNX01000014
Alphaproteobacteria
Erythrobacter sp. REDSEA-S43_B2 [LUNX]
43773
43698
-
Thr
TGT
[ENA]
¡û
>W1610937014
LUNY01000150
Alphaproteobacteria
Erythrobacter sp. REDSEA-S45_B7 [LUNY]
2302
2377
+
Thr
TGT
[ENA]
¡û
>W1610984513
LWFF01000319
Alphaproteobacteria
Erythrobacter sp. HI0063 [LWFF]
2923
2848
-
Thr
TGT
[ENA]
¡û
>W1710068596
BCTX01000024
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
59295
59220
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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