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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271611 (85 seq.)
>W1710777838
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
368799
368875
+
Pro
TGG
[ENA]
¡û
>W1710777891
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
345715
345791
+
Pro
TGG
[ENA]
¡û
>W1710892068
LNDJ01000107
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
41409
41485
+
Pro
TGG
[ENA]
¡û
>W1710915843
LNUO01000022
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
51772
51848
+
Pro
TGG
[ENA]
¡û
>W1711227882
LXWA01000053
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
47019
47095
+
Pro
TGG
[ENA]
¡û
>W1711303098
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
359474
359550
+
Pro
TGG
[ENA]
¡û
>W1711682911
MRYA01000003
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
410718
410794
+
Pro
TGG
[ENA]
¡û
>W1711682958
MRYB01000007
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
106392
106316
-
Pro
TGG
[ENA]
¡û
>W1711682983
MRYC01000001
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
44471
44395
-
Pro
TGG
[ENA]
¡û
>C171019142
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1700812
1700736
-
Pro
TGG
-
¡û
>C171131054
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
341073
341149
+
Pro
TGG
-
¡û
>W131180567
ARNF01000060
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
29054
28978
-
Pro
TGG
[ENA]
¡û
>C015796
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
269965
270041
+
Pro
TGG
[Ensembl]
¡û
>C015959
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
299721
299797
+
Pro
TGG
[Ensembl]
¡û
>C017924
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2527083
2527007
-
Pro
TGG
[Ensembl]
¡û
>WENV180101033
OAOU01000013
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
25023
24947
-
Pro
TGG
[ENA]
¢þ
>w003202
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
395108
395030
-
Pro
TGG
[ENA]
¡û
>WENV180366843
OBOD01169060
[OBOD] marine metagenome; ENVO:00002010
7
83
+
Pro
TGG
[ENA]
¢þ
>W141086186
AUSW01000032
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
39989
40065
+
Pro
TGG
[ENA]
¡û
>W141195650
AYUI01000011
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
65849
65925
+
Pro
TGG
[ENA]
¡û
>W141199944
AYXM01000038
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
17476
17552
+
Pro
TGG
[ENA]
¡û
>W141199989
AYXN01000017
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
65849
65925
+
Pro
TGG
[ENA]
¡û
>W141200514
AYXZ01000085
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
73213
73137
-
Pro
TGG
[ENA]
¡û
>W141200566
AYYA01000044
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
166997
166921
-
Pro
TGG
[ENA]
¡û
>C08007193
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
269965
270041
+
Pro
TGG
[Ensembl]
¡û
>W141233961
BAWG01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
398165
398241
+
Pro
TGG
[ENA]
¡û
>W141234002
BAWH01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
113322
113398
+
Pro
TGG
[ENA]
¡û
>W141234034
BAWI01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
375679
375755
+
Pro
TGG
[ENA]
¡û
>W141234088
BAWJ01000005
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
32198
32122
-
Pro
TGG
[ENA]
¡û
>WENV182549757
OJBZ01000001
[OJBZ] seawater metagenome; Sea water
200211
200135
-
Pro
TGG
[ENA]
¢þ
>WENV182562346
OJDZ01001194
[OJDZ] seawater metagenome; Sea water
4488
4412
-
Pro
TGG
[ENA]
¢þ
>WENV183709582
PDWI01030514
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5042
5118
+
Pro
TGG
[ENA]
¢þ
>WENV183718539
PDWJ01004723
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9917
9841
-
Pro
TGG
[ENA]
¢þ
>WENV170014628
AYSL01001568
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
2853
2929
+
Pro
TGG
[ENA]
¢þ
>WENV170121542
CENM01039698
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3136
3060
-
Pro
TGG
[ENA]
¢þ
>WENV170563224
CZCB01012178
[CZCB] anaerobic digester metagenome; anaerobic digester
1114
1038
-
Pro
TGG
[ENA]
¢þ
>WENV170579048
FUFK010037828
[FUFK] metagenome; unknown
25167
25091
-
Pro
TGG
[ENA]
¢þ
>WENV170581718
FUFK010066801
[FUFK] metagenome; unknown
1949
2025
+
Pro
TGG
[ENA]
¢þ
>WENV170583933
FUFK010176131
[FUFK] metagenome; unknown
2125
2049
-
Pro
TGG
[ENA]
¢þ
>WENV170590984
FUFK010746817
[FUFK] metagenome; unknown
4794
4718
-
Pro
TGG
[ENA]
¢þ
>WENV170793923
MDSV01124168
[MDSV] marine metagenome; seawater
2123
2047
-
Pro
TGG
[ENA]
¢þ
>C181056038
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2063143
2063219
+
Pro
TGG
-
¡û
>C181185232
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2363392
2363316
-
Pro
TGG
-
¡û
>C191163857
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2899728
2899652
-
Pro
TGG
-
¡û
>W09103305
AAJC01000004
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
24332
24408
+
Pro
TGG
[ENA]
¡û
>W09105587
AAPX01000021
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
45739
45663
-
Pro
TGG
[ENA]
¡û
>W141701346
JMKP01000013
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
50124
50048
-
Pro
TGG
[ENA]
¡û
>W1910372475
FUGD01000060
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
39237
39313
+
Pro
TGG
[ENA]
¡û
>W1910372513
FUGE01000054
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
6849
6773
-
Pro
TGG
[ENA]
¡û
>W1910377610
FUKN01000014
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
433331
433407
+
Pro
TGG
[ENA]
¡û
>W1910891626
NEXR01000001
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
395846
395922
+
Pro
TGG
[ENA]
¡û
>W1910891768
NEXU01000051
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
12276
12352
+
Pro
TGG
[ENA]
¡û
>W1911203651
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1345961
1345885
-
Pro
TGG
[ENA]
¡û
>W1911397568
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2325059
2325135
+
Pro
TGG
[ENA]
¡û
>W1911534862
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1483558
1483634
+
Pro
TGG
[ENA]
¡û
>W1810155456
PJAS01000052
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
87593
87517
-
Pro
TGG
[ENA]
¡û
>W1810155503
PJAT01000092
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
538
462
-
Pro
TGG
[ENA]
¡û
>W1810156167
PJBD01000007
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
56537
56613
+
Pro
TGG
[ENA]
¡û
>W1810156335
PJBF01000058
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
127569
127645
+
Pro
TGG
[ENA]
¡û
>W1810156431
PJBH01000062
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
23691
23767
+
Pro
TGG
[ENA]
¡û
>W1810157272
PJBU01000114
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
76085
76161
+
Pro
TGG
[ENA]
¡û
>W1810157377
PJBX01000159
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
65243
65319
+
Pro
TGG
[ENA]
¡û
>W1810157412
PJBY01000067
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
34796
34872
+
Pro
TGG
[ENA]
¡û
>W1810596403
QGGM01000007
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
117936
118012
+
Pro
TGG
[ENA]
¡û
>W1810671417
QJSU01000001
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
255013
254937
-
Pro
TGG
[ENA]
¡û
>W1810692675
QLKS01000003
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
229849
229773
-
Pro
TGG
[ENA]
¡û
>C151097225
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1788332
1788408
+
Pro
TGG
-
¡û
>W11163491
AFHU01000188
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
8786
8710
-
Pro
TGG
[ENA]
¡û
>C161042725
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
356215
356291
+
Pro
TGG
-
¡û
>C161042773
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
344850
344926
+
Pro
TGG
[Ensembl]
¡û
>C161079253
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
341784
341860
+
Pro
TGG
[Ensembl]
¡û
>W121043483
AHVZ01000003
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
62518
62442
-
Pro
TGG
[ENA]
¡û
>W1610071742
BCUH01000020
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
4959
5035
+
Pro
TGG
[ENA]
¡û
>W1610112398
CZJV02000092
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
82211
82287
+
Pro
TGG
[ENA]
¡û
>C131017369
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
300583
300659
+
Pro
TGG
[Ensembl]
¡û
>W1610632723
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
135445
135369
-
Pro
TGG
[ENA]
¡û
>W1610642024
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
368799
368875
+
Pro
TGG
[ENA]
¡û
>W1610642077
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
345715
345791
+
Pro
TGG
[ENA]
¡û
>W1610752334
LNDJ01000107
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
41409
41485
+
Pro
TGG
[ENA]
¡û
>W1610774082
LNUO01000022
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
51772
51848
+
Pro
TGG
[ENA]
¡û
>W1611011846
LXWA01000053
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
47019
47095
+
Pro
TGG
[ENA]
¡û
>W1710068944
BCUH01000020
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
4959
5035
+
Pro
TGG
[ENA]
¡û
>W1710115102
CZJV02000092
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
82211
82287
+
Pro
TGG
[ENA]
¡û
>W1710513788
FNAL01000001
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
107660
107736
+
Pro
TGG
[ENA]
¡û
>W1710767155
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
135445
135369
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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