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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271617 (76 seq.)
>W1710777863
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
719970
719894
-
Pro
GGG
[ENA]
¡û
>W1710777911
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
717918
717842
-
Pro
GGG
[ENA]
¡û
>W1710892057
LNDJ01000049
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
10468
10544
+
Pro
GGG
[ENA]
¡û
>W1711227898
LXWA01000097
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
44498
44574
+
Pro
GGG
[ENA]
¡û
>W1711303113
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
597154
597078
-
Pro
GGG
[ENA]
¡û
>W1711683002
MRYC01000009
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
75502
75426
-
Pro
GGG
[ENA]
¡û
>C171092392
CP019343
Gammaproteobacteria
Oceanicoccus sagamiensis NBRC 107125 [CP019343]
309003
309079
+
Pro
GGG
-
¡û
>W131168351
ARDZ01000003
Gammaproteobacteria
Dasania marina DSM 21967 [ARDZ]
204677
204601
-
Pro
GGG
[ENA]
¡û
>C015836
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
585465
585389
-
Pro
GGG
[Ensembl]
¡û
>C015999
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
582727
582651
-
Pro
GGG
[Ensembl]
¡û
>C017930
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
512378
512302
-
Pro
GGG
[Ensembl]
¡û
>w021592
AAVT01000008
Gammaproteobacteria
marine gamma proteobacterium HTCC2143 [AAVT]
150219
150297
+
Pro
GGG
[ENA]
¡û
>WENV180101042
OAOU01000032
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
12379
12455
+
Pro
GGG
[ENA]
¢þ
>WENV180101050
OAOU01000053
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
7929
8005
+
Pro
GGG
[ENA]
¢þ
>WENV180101069
OAOU01000131
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
3577
3501
-
Pro
GGG
[ENA]
¢þ
>w003196
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
967232
967154
-
Pro
GGG
[ENA]
¡û
>W141086164
AUSW01000014
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
77541
77465
-
Pro
GGG
[ENA]
¡û
>WENV181201354
OERN01003040
[OERN] metagenome; water of meat washing
170
246
+
Pro
GGG
[ENA]
¢þ
>W141195648
AYUI01000009
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
45142
45218
+
Pro
GGG
[ENA]
¡û
>W141199940
AYXM01000032
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
88724
88648
-
Pro
GGG
[ENA]
¡û
>W141199981
AYXN01000013
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
45142
45218
+
Pro
GGG
[ENA]
¡û
>W141200521
AYXZ01000119
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
88600
88524
-
Pro
GGG
[ENA]
¡û
>W141200577
AYYA01000054
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
88724
88648
-
Pro
GGG
[ENA]
¡û
>C08007233
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
585465
585392
-
Pro
GGG
[Ensembl]
¡û
>W141233984
BAWG01000009
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
76402
76478
+
Pro
GGG
[ENA]
¡û
>W141234028
BAWH01000027
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
13462
13386
-
Pro
GGG
[ENA]
¡û
>W141234059
BAWI01000008
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
41244
41168
-
Pro
GGG
[ENA]
¡û
>WENV182542098
OJAV01002805
[OJAV] seawater metagenome; Sea water
634
710
+
Pro
GGG
[ENA]
¢þ
>WENV182549781
OJBZ01000015
[OJBZ] seawater metagenome; Sea water
40095
40171
+
Pro
GGG
[ENA]
¢þ
>WENV182562370
OJDZ01001471
[OJDZ] seawater metagenome; Sea water
4241
4317
+
Pro
GGG
[ENA]
¢þ
>WENV182575064
OJFS01032980
[OJFS] seawater metagenome; Sea water
470
394
-
Pro
GGG
[ENA]
¢þ
>WENV170014627
AYSL01001493
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
178
102
-
Pro
GGG
[ENA]
¢þ
>WENV170121546
CENM01039715
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
282
206
-
Pro
GGG
[ENA]
¢þ
>WENV170243087
CEQO01118650
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
268
192
-
Pro
GGG
[ENA]
¢þ
>WENV170291449
CESA01130425
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
300
376
+
Pro
GGG
[ENA]
¢þ
>WENV170579907
FUFK010042446
[FUFK] metagenome; unknown
26639
26715
+
Pro
GGG
[ENA]
¢þ
>WENV170580075
FUFK010044046
[FUFK] metagenome; unknown
96571
96495
-
Pro
GGG
[ENA]
¢þ
>WENV170584094
FUFK010189902
[FUFK] metagenome; unknown
1019
1095
+
Pro
GGG
[ENA]
¢þ
>WENV170585609
FUFK010307171
[FUFK] metagenome; unknown
1121
1197
+
Pro
GGG
[ENA]
¢þ
>WENV170591505
FUFK010776881
[FUFK] metagenome; unknown
7320
7244
-
Pro
GGG
[ENA]
¢þ
>WENV170591587
FUFK010782197
[FUFK] metagenome; unknown
445
521
+
Pro
GGG
[ENA]
¢þ
>WENV170593060
FUFK010840209
[FUFK] metagenome; unknown
1506
1430
-
Pro
GGG
[ENA]
¢þ
>WENV170932394
MDTG01201828
[MDTG] marine metagenome; seawater
211
135
-
Pro
GGG
[ENA]
¢þ
>C181056055
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2347575
2347499
-
Pro
GGG
-
¡û
>C181185238
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
508637
508561
-
Pro
GGG
-
¡û
>C191163848
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2553958
2554034
+
Pro
GGG
-
¡û
>W09103316
AAJC01000012
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
3987
4063
+
Pro
GGG
[ENA]
¡û
>W09105586
AAPX01000019
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
38691
38615
-
Pro
GGG
[ENA]
¡û
>W1910270358
FQLF01000001
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
306018
306094
+
Pro
GGG
[ENA]
¡û
>W1910377591
FUKN01000011
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
81059
80983
-
Pro
GGG
[ENA]
¡û
>W1911203638
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1031045
1031121
+
Pro
GGG
[ENA]
¡û
>W1911397555
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
1259788
1259864
+
Pro
GGG
[ENA]
¡û
>W1810155483
PJAS01000077
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
20558
20482
-
Pro
GGG
[ENA]
¡û
>W1810155519
PJAT01000113
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
67226
67302
+
Pro
GGG
[ENA]
¡û
>W1810156165
PJBD01000003
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
71696
71772
+
Pro
GGG
[ENA]
¡û
>W1810156327
PJBF01000048
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
1204
1128
-
Pro
GGG
[ENA]
¡û
>W1810156422
PJBH01000052
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
75294
75370
+
Pro
GGG
[ENA]
¡û
>W1810157260
PJBU01000106
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
26964
27040
+
Pro
GGG
[ENA]
¡û
>W1810157394
PJBX01000174
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
47641
47565
-
Pro
GGG
[ENA]
¡û
>W1810157438
PJBY01000106
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
65589
65665
+
Pro
GGG
[ENA]
¡û
>W1810596408
QGGM01000009
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
74474
74550
+
Pro
GGG
[ENA]
¡û
>W1810671444
QJSU01000009
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
92940
92864
-
Pro
GGG
[ENA]
¡û
>W1810692684
QLKS01000005
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
74562
74638
+
Pro
GGG
[ENA]
¡û
>W11163463
AFHU01000068
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
88459
88535
+
Pro
GGG
[ENA]
¡û
>C161079295
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
687552
687476
-
Pro
GGG
[Ensembl]
¡û
>W121043494
AHVZ01000007
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
83325
83249
-
Pro
GGG
[ENA]
¡û
>W1610112404
CZJV02000095
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
74668
74744
+
Pro
GGG
[ENA]
¡û
>C131017409
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
581121
581045
-
Pro
GGG
[Ensembl]
¡û
>W1610632747
LIQB01000007
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
112572
112496
-
Pro
GGG
[ENA]
¡û
>W1610642049
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
719970
719894
-
Pro
GGG
[ENA]
¡û
>W1610642097
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
717918
717842
-
Pro
GGG
[ENA]
¡û
>W1610752323
LNDJ01000049
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
10468
10544
+
Pro
GGG
[ENA]
¡û
>W1611011862
LXWA01000097
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
44498
44574
+
Pro
GGG
[ENA]
¡û
>W1710115108
CZJV02000095
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
74668
74744
+
Pro
GGG
[ENA]
¡û
>W1710513809
FNAL01000007
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
64106
64030
-
Pro
GGG
[ENA]
¡û
>W1710767179
LIQB01000007
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
112572
112496
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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