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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271641 (77 seq.)
>W1711047331
LROY01000001
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
1403272
1403347
+
Ala
TGC
[ENA]
¡û
>W1711047339
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
342035
342110
+
Ala
TGC
[ENA]
¡û
>C171097771
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
3774161
3774086
-
Ala
TGC
-
¡û
>C171097777
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
3407308
3407233
-
Ala
TGC
-
¡û
>C171097783
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
2902048
2901973
-
Ala
TGC
-
¡û
>w016587
AAQH01000004
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
696
773
+
Ala
TGC
[ENA]
¡û
>WENV180041932
LLBZ010731985
[LLBZ] soil metagenome; soil from tomato rhizosphere
516
441
-
Ala
TGC
[ENA]
¡û
>WENV180116099
OAPT01128354
[OAPT] marine metagenome; seawater
33
108
+
Ala
GGC
[ENA]
¡û
>WENV182586931
OJHK01015443
[OJHK] seawater metagenome; Sea water
1010
935
-
Ala
TGC
[ENA]
¡û
>WENV170350043
CETH01058688
[CETH] marine metagenome genome assembly TARA_122_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
346
421
+
Ala
GGC
[ENA]
¡û
>W141425809
JELR01000004
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
2809
2884
+
Ala
TGC
[ENA]
¡û
>W141425817
JELR01000008
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
426
501
+
Ala
TGC
[ENA]
¡û
>C181067762
CP022530
Gammaproteobacteria
Bacterioplanes sanyensis NV9 [CP022530]
1255731
1255806
+
Ala
TGC
-
¡û
>W1911434587
NXNX01000068
Gammaproteobacteria
Escherichia coli 25b_Esco_HA-NL [NXNX]
42029
42104
+
Ala
TGC
[ENA]
¡û
>W1911639818
PXVP01000308
Gammaproteobacteria
Salmonella enterica SEH-11 [PXVP]
701
626
-
Ala
TGC
[ENA]
¡û
>W1810270691
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
1866991
1867066
+
Ala
TGC
[ENA]
¡û
>W1810270693
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
2272645
2272720
+
Ala
TGC
[ENA]
¡û
>W1810270705
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
780583
780508
-
Ala
TGC
[ENA]
¡û
>W1810270710
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
3183
3108
-
Ala
TGC
[ENA]
¡û
>W1810893675
QUWM01000036
Gammaproteobacteria
Klebsiella pneumoniae R1700 [QUWM]
53194
53119
-
Ala
TGC
[ENA]
¡û
>W2010702912
JACHHR010000012
Gammaproteobacteria
Microbulbifer hydrolyticus DSM 11525 [JACHHR]
3257
3182
-
Ala
TGC
[ENA]
¡û
>W2010717382
JACHXZ010000009
Gammaproteobacteria
Simiduia aestuariiviva CECT 8571 [JACHXZ]
3336
3261
-
Ala
TGC
[ENA]
¡û
>W2011961588
VANI01000061
Gammaproteobacteria
Microbulbifer sp. HB161719 [VANI]
235
160
-
Ala
TGC
[ENA]
¡û
>W2011961589
VANI01000066
Gammaproteobacteria
Microbulbifer sp. HB161719 [VANI]
427
352
-
Ala
TGC
[ENA]
¡û
>W2110049893
BMYY01000037
Gammaproteobacteria
Bacterioplanes sanyensis KCTC 32220 [BMYY]
184
259
+
Ala
TGC
[ENA]
¡û
>W2110295209
JACZFR010000075
Gammaproteobacteria
Microbulbifer taiwanensis LMG 26125 [JACZFR]
2229
2304
+
Ala
TGC
[ENA]
¡û
>W2110655106
JAHVKG010000011
Gammaproteobacteria
Microbulbifer agarilyticus DP3N7-3 [JAHVKG]
1835
1910
+
Ala
TGC
[ENA]
¡û
>W2110655617
JAHVKO010000022
Gammaproteobacteria
Microbulbifer agarilyticus DP4N21-6 [JAHVKO]
433
358
-
Ala
TGC
[ENA]
¡û
>C201193056
CP046948
Gammaproteobacteria
Microbulbifer sp. SH-1 [CP046948]
569478
569553
+
Ala
TGC
-
¡û
>C201193084
CP046948
Gammaproteobacteria
Microbulbifer sp. SH-1 [CP046948]
4457370
4457445
+
Ala
TGC
-
¡û
>C201193090
CP046948
Gammaproteobacteria
Microbulbifer sp. SH-1 [CP046948]
3216705
3216630
-
Ala
TGC
-
¡û
>C201193092
CP046948
Gammaproteobacteria
Microbulbifer sp. SH-1 [CP046948]
2739984
2739909
-
Ala
TGC
-
¡û
>C201202187
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
1018412
1018487
+
Ala
TGC
-
¡û
>C201202192
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
1375365
1375440
+
Ala
TGC
-
¡û
>C201202205
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
3746975
3746900
-
Ala
TGC
-
¡û
>C201202207
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
3741129
3741054
-
Ala
TGC
-
¡û
>W2110700782
JAIUZG010000015
Gammaproteobacteria
Microbulbifer agarilyticus DP5N0-1 [JAIUZG]
3554
3479
-
Ala
TGC
[ENA]
¡û
>W2110701060
JAIUZM010000007
Gammaproteobacteria
Microbulbifer agarilyticus DP3N0-2 [JAIUZM]
300
375
+
Ala
TGC
[ENA]
¡û
>W2110703456
JAIVKJ010000026
Gammaproteobacteria
Microbulbifer elongatus SaN0-4 [JAIVKJ]
388
463
+
Ala
TGC
[ENA]
¡û
>W2110703458
JAIVKJ010000028
Gammaproteobacteria
Microbulbifer elongatus SaN0-4 [JAIVKJ]
235
310
+
Ala
TGC
[ENA]
¡û
>W2110703519
JAIVKK010000049
Gammaproteobacteria
Microbulbifer aggregans SaN0-8 [JAIVKK]
241
166
-
Ala
TGC
[ENA]
¡û
>C231003442
AP023086
Gammaproteobacteria
Marinagarivorans sp. GE09 [AP023086]
1830854
1830929
+
Ala
TGC
-
¡û
>C231003443
AP023086
Gammaproteobacteria
Marinagarivorans sp. GE09 [AP023086]
1952754
1952829
+
Ala
TGC
-
¡û
>C231244980
CP087715
Gammaproteobacteria
Microbulbifer celer KCTC 12973 [CP087715]
957332
957407
+
Ala
TGC
-
¡û
>C231244994
CP087715
Gammaproteobacteria
Microbulbifer celer KCTC 12973 [CP087715]
3694058
3693983
-
Ala
TGC
-
¡û
>C231244997
CP087715
Gammaproteobacteria
Microbulbifer celer KCTC 12973 [CP087715]
3210941
3210866
-
Ala
TGC
-
¡û
>C231245004
CP087715
Gammaproteobacteria
Microbulbifer celer KCTC 12973 [CP087715]
2758854
2758779
-
Ala
TGC
-
¡û
>C231254145
CP088953
Gammaproteobacteria
Microbulbifer elongatus DSM 6810 [CP088953]
1596194
1596269
+
Ala
TGC
-
¡û
>C231254172
CP088953
Gammaproteobacteria
Microbulbifer elongatus DSM 6810 [CP088953]
3509175
3509100
-
Ala
TGC
-
¡û
>C231287251
CP090959
Gammaproteobacteria
Simiduia sp. 21SJ11W-1 [CP090959]
1455912
1455987
+
Ala
TGC
-
¡û
>C231287267
CP090959
Gammaproteobacteria
Simiduia sp. 21SJ11W-1 [CP090959]
3455822
3455747
-
Ala
TGC
-
¡û
>C231287276
CP090959
Gammaproteobacteria
Simiduia sp. 21SJ11W-1 [CP090959]
3269457
3269382
-
Ala
TGC
-
¡û
>C241121026
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
960381
960456
+
Ala
TGC
-
¡û
>C241121034
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
2271137
2271212
+
Ala
TGC
-
¡û
>C241121052
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
4674919
4674844
-
Ala
TGC
-
¡û
>C241121059
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
4258516
4258441
-
Ala
TGC
-
¡û
>C241121075
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
15783
15708
-
Ala
TGC
-
¡û
>C241149232
CP051183
Gammaproteobacteria
Bermanella marisrubri RED65 [CP051183]
458663
458738
+
Ala
TGC
-
¡û
>C241170944
CP055157
Gammaproteobacteria
Microbulbifer sp. YPW1 [CP055157]
2123672
2123747
+
Ala
TGC
-
¡û
>C241170950
CP055157
Gammaproteobacteria
Microbulbifer sp. YPW1 [CP055157]
3049013
3049088
+
Ala
TGC
-
¡û
>C241170977
CP055157
Gammaproteobacteria
Microbulbifer sp. YPW1 [CP055157]
1402242
1402167
-
Ala
TGC
-
¡û
>C241234533
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
4387213
4387288
+
Ala
TGC
-
¡û
>C241234541
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
2567828
2567753
-
Ala
TGC
-
¡û
>C241234542
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
2238367
2238292
-
Ala
TGC
-
¡û
>C241234549
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
1795653
1795578
-
Ala
TGC
-
¡û
>C241338306
CP137555
Gammaproteobacteria
Microbulbifer pacificus SPO729 [CP137555]
2097488
2097413
-
Ala
TGC
-
¡û
>C241338308
CP137555
Gammaproteobacteria
Microbulbifer pacificus SPO729 [CP137555]
2091629
2091554
-
Ala
TGC
-
¡û
>C241338310
CP137555
Gammaproteobacteria
Microbulbifer pacificus SPO729 [CP137555]
1643273
1643198
-
Ala
TGC
-
¡û
>C241338317
CP137555
Gammaproteobacteria
Microbulbifer pacificus SPO729 [CP137555]
1319079
1319004
-
Ala
TGC
-
¡û
>C241338322
CP137555
Gammaproteobacteria
Microbulbifer pacificus SPO729 [CP137555]
742666
742591
-
Ala
TGC
-
¡û
>W1511573593
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
2916365
2916440
+
Ala
TGC
[ENA]
¡û
>W11150211
AEVK01000421
Gammaproteobacteria
gamma proteobacterium IMCC1989 [AEVK]
191
266
+
Ala
TGC
[ENA]
¡û
>C131006075
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
2075042
2074967
-
Ala
TGC
[Ensembl]
¡û
>C131006084
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
1909559
1909484
-
Ala
TGC
[Ensembl]
¡û
>C131006090
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
1037552
1037477
-
Ala
TGC
[Ensembl]
¡û
>W1610888460
LROY01000001
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
1403272
1403347
+
Ala
TGC
[ENA]
¡û
>W1610888468
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
342035
342110
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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