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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271643 (28 seq.)
>W1711097973
LTJE01000023
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
73805
73881
+
Asp
GTC
[ENA]
¡û
>W1711097974
LTJE01000023
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
73916
73990
+
Asp
GTC
[ENA]
¡û
>W141266266
CCMH01000052
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
44477
44553
+
Asp
GTC
[ENA]
¡û
>W141266267
CCMH01000052
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
44590
44666
+
Asp
GTC
[ENA]
¡û
>WENV183726990
PJTO01001389
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
1853
1779
-
Asp
GTC
[ENA]
¢þ
>WENV183728739
PJTQ01000345
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
12713
12787
+
Asp
GTC
[ENA]
¢þ
>WENV183737387
PJUD01005881
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1041
1115
+
Asp
GTC
[ENA]
¢þ
>WENV183740147
PJUF01000476
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
24693
24619
-
Asp
GTC
[ENA]
¢þ
>WENV170000222
AERA01027590
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
130
204
+
Asp
GTC
[ENA]
¢þ
>C191132763
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
2101005
2100931
-
Asp
GTC
-
¡û
>C191132764
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
2100879
2100805
-
Asp
GTC
-
¡û
>C191181532
CP040694
Bacteroidota
Elizabethkingia sp. JS20170427COW [CP040694]
900369
900443
+
Asp
GTC
-
¡û
>C191181574
CP040694
Bacteroidota
Elizabethkingia sp. JS20170427COW [CP040694]
332809
332735
-
Asp
GTC
-
¡û
>C191210746
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1687746
1687672
-
Asp
GTC
-
¡û
>C191210747
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1687634
1687560
-
Asp
GTC
-
¡û
>W1810282700
PSZL01000004
Bacteroidota
Apibacter sp. wkB309 [PSZL]
31571
31645
+
Asp
GTC
[ENA]
¡û
>W1810282701
PSZL01000004
Bacteroidota
Apibacter sp. wkB309 [PSZL]
31698
31772
+
Asp
GTC
[ENA]
¡û
>WENV11100580
AERA01027590
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
130
204
+
Asp
GTC
[ENA]
¡û
>C11123794
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1420650
1420726
+
Asp
GTC
[Ensembl]
¡û
>C11123795
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1420762
1420836
+
Asp
GTC
[Ensembl]
¡û
>W1610207162
FCOR01000007
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
100155
100079
-
Asp
GTC
[ENA]
¡û
>W1610207163
FCOR01000007
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
100029
99953
-
Asp
GTC
[ENA]
¡û
>W1610637949
LIVM01000007
Bacteroidota
Apibacter mensalis [LIVM]
100155
100079
-
Asp
GTC
[ENA]
¡û
>W1610637950
LIVM01000007
Bacteroidota
Apibacter mensalis [LIVM]
100029
99953
-
Asp
GTC
[ENA]
¡û
>W1710207856
FCOR01000007
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
100155
100079
-
Asp
GTC
[ENA]
¡û
>W1710207857
FCOR01000007
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
100029
99953
-
Asp
GTC
[ENA]
¡û
>W1710772722
LIVM01000007
Bacteroidota
Apibacter mensalis [LIVM]
100155
100079
-
Asp
GTC
[ENA]
¡û
>W1710772723
LIVM01000007
Bacteroidota
Apibacter mensalis [LIVM]
100029
99953
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK