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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271693 (87 seq.)
>W1711413655
MGWQ01000122
Betaproteobacteria
Gallionellales bacterium GWA2_59_43 [MGWQ]
13810
13886
+
Arg
TCT
[ENA]
¡û
>W1711413702
MGWR01000070
Betaproteobacteria
Gallionellales bacterium GWA2_60_142 [MGWR]
37212
37288
+
Arg
TCT
[ENA]
¡û
>W1711413719
MGWS01000008
Betaproteobacteria
Gallionellales bacterium GWA2_60_18 [MGWS]
79476
79400
-
Arg
TCT
[ENA]
¡û
>W1711505601
MKVR01000047
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
11995
12071
+
Arg
TCT
[ENA]
¡û
>W1711582061
MNUX01000030
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_325 [MNUX]
11931
12007
+
Arg
TCT
[ENA]
¡û
>C014760
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
1460903
1460827
-
Arg
TCT
[Ensembl]
¡û
>C014801
CP000450
Betaproteobacteria
Nitrosomonas eutropha C91 [CP000450]
1329304
1329228
-
Arg
TCT
[Ensembl]
¡û
>C015140
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
253241
253317
+
Arg
TCT
[Ensembl]
¡û
>w002424
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
1460905
1460832
-
Arg
TCT
[ENA]
¡û
>WENV181144267
OEHO01001130
[OEHO] metagenome; unknown
563
639
+
Arg
TCT
[ENA]
¢þ
>WENV181168347
OEIU01291114
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
101
25
-
Arg
TCT
[ENA]
¢þ
>WENV181184586
OEKM01000106
[OEKM] metagenome; 1998
113
37
-
Arg
TCT
[ENA]
¢þ
>WENV181292152
OFHD01047293
[OFHD] soil metagenome; Clay
376
300
-
Arg
TCT
[ENA]
¢þ
>WENV181293537
OFHG01007289
[OFHG] soil metagenome; Clay
815
739
-
Arg
TCT
[ENA]
¢þ
>WENV181294856
OFHH01055330
[OFHH] soil metagenome; Clay
241
165
-
Arg
TCT
[ENA]
¢þ
>WENV181296964
OFHK01003295
[OFHK] soil metagenome; Clay
2779
2855
+
Arg
TCT
[ENA]
¢þ
>WENV181387246
OFRL01067951
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
125
49
-
Arg
TCT
[ENA]
¢þ
>WENV170426285
CEUQ01070010
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9779
9855
+
Arg
TCT
[ENA]
¢þ
>WENV170434105
CEUS01235625
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
252
176
-
Arg
TCT
[ENA]
¢þ
>WENV170451855
CEUZ01220629
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
20094
20170
+
Arg
TCT
[ENA]
¢þ
>WENV170455802
CEVA01141796
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
387
311
-
Arg
TCT
[ENA]
¢þ
>WENV170556636
CXWL01011449
[CXWL] groundwater metagenome; biofilm material
10474
10398
-
Arg
TCT
[ENA]
¢þ
>WENV170712870
LNFM01019203
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3344
3420
+
Arg
TCT
[ENA]
¢þ
>WENV170961384
MLJW01000021
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
143527
143451
-
Arg
TCT
[ENA]
¢þ
>WENV170961403
MLJW01000026
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
176878
176954
+
Arg
TCT
[ENA]
¢þ
>WENV170961561
MLJW01000152
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
38187
38111
-
Arg
TCT
[ENA]
¢þ
>WENV170961589
MLJW01000192
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2992
2916
-
Arg
TCT
[ENA]
¢þ
>C181049332
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
353600
353524
-
Arg
TCT
-
¡û
>C191004576
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
1706676
1706752
+
Arg
TCT
-
¡û
>W141558425
JHVX01000005
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
216739
216663
-
Arg
TCT
[ENA]
¡û
>W09103414
AAJE01000029
Betaproteobacteria
Nitrosomonas eutropha C71 [AAJE]
18710
18634
-
Arg
TCT
[ENA]
¡û
>W09134933
ACVF01000001
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [ACVF]
160459
160535
+
Arg
TCT
[ENA]
¡û
>W141817329
JQKP01000003
Betaproteobacteria
Ferriphaselus sp. R-1 [JQKP]
192086
192162
+
Arg
TCT
[ENA]
¡û
>W1910226491
FMWO01000032
Betaproteobacteria
Nitrosomonas mobilis [FMWO]
28402
28326
-
Arg
TCT
[ENA]
¡û
>W1910228559
FNVK01000010
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
51123
51047
-
Arg
TCT
[ENA]
¡û
>W1911496910
OCMZ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
411380
411304
-
Arg
TCT
[ENA]
¡û
>W1810463553
PZZQ01000008
Betaproteobacteria
Nitrosomonas eutropha Nm19 [PZZQ]
88117
88193
+
Arg
TCT
[ENA]
¡û
>W1810463594
PZZR01000003
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
383105
383029
-
Arg
TCT
[ENA]
¡û
>W1810463653
PZZS01000015
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
2296
2220
-
Arg
TCT
[ENA]
¡û
>W1810464102
QAAC01000028
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
14180
14256
+
Arg
TCT
[ENA]
¡û
>W1810476943
QAOK01000012
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
53540
53616
+
Arg
TCT
[ENA]
¡û
>W1810477123
QAOO01000009
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
64665
64589
-
Arg
TCT
[ENA]
¡û
>W1810477289
QAOR01000028
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
14180
14256
+
Arg
TCT
[ENA]
¡û
>W1810477421
QAOU01000004
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
68033
68109
+
Arg
TCT
[ENA]
¡û
>W1810503436
QBKC01000011
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
31507
31431
-
Arg
TCT
[ENA]
¡û
>W1810628660
QICQ01000036
Betaproteobacteria
Nitrosomonas eutropha Nm 57 [QICQ]
9915
9991
+
Arg
TCT
[ENA]
¡û
>W1810696197
QLTB01000015
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
60971
61047
+
Arg
TCT
[ENA]
¡û
>W1810696244
QLTC01000028
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
3779
3703
-
Arg
TCT
[ENA]
¡û
>W1810696248
QLTD01000001
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
58096
58172
+
Arg
TCT
[ENA]
¡û
>C151082869
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
3145991
3145915
-
Arg
TCT
[Ensembl]
¡û
>C151094445
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
1993614
1993690
+
Arg
TCT
-
¡û
>W1510017291
BBTH01000002
Betaproteobacteria
Ferriphaselus amnicola OYT1 [BBTH]
72823
72899
+
Arg
TCT
[ENA]
¡û
>C10111863
CP001965
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [CP001965]
1506349
1506425
+
Arg
TCT
[Ensembl]
¡û
>W1511508785
JXQM01000026
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
3228
3152
-
Arg
TCT
[ENA]
¡û
>W1610574708
JZQZ01000303
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
4280
4356
+
Arg
TCT
[ENA]
¡û
>W1710505683
FMTW01000006
Betaproteobacteria
Nitrosomonas eutropha [FMTW]
88301
88377
+
Arg
TCT
[ENA]
¡û
>W1710505968
FMUF01000008
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
20221
20297
+
Arg
TCT
[ENA]
¡û
>W1710507307
FMVD01000024
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
2474
2398
-
Arg
TCT
[ENA]
¡û
>W1710507956
FMVQ01000017
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
1641
1565
-
Arg
TCT
[ENA]
¡û
>W1710509163
FMWY01000022
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
51872
51948
+
Arg
TCT
[ENA]
¡û
>W1710517429
FNDH01000116
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
438
514
+
Arg
TCT
[ENA]
¡û
>W1710527365
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
341623
341547
-
Arg
TCT
[ENA]
¡û
>W1710528516
FNNH01000003
Betaproteobacteria
Nitrosomonas communis [FNNH]
1722
1646
-
Arg
TCT
[ENA]
¡û
>W1710528754
FNNM01000001
Betaproteobacteria
Nitrosomonas eutropha [FNNM]
161586
161510
-
Arg
TCT
[ENA]
¡û
>W1710529352
FNNX01000005
Betaproteobacteria
Nitrosomonas europaea [FNNX]
71174
71098
-
Arg
TCT
[ENA]
¡û
>W1710530700
FNOY01000032
Betaproteobacteria
Nitrosomonas halophila [FNOY]
22066
22142
+
Arg
TCT
[ENA]
¡û
>W1710531184
FNPJ01000008
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
53236
53312
+
Arg
TCT
[ENA]
¡û
>W1710531587
FNPQ01000045
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
17928
18004
+
Arg
TCT
[ENA]
¡û
>W1710532575
FNQL01000001
Betaproteobacteria
Nitrosospira multiformis [FNQL]
413113
413037
-
Arg
TCT
[ENA]
¡û
>W1710541292
FNYF01000011
Betaproteobacteria
Nitrosomonas eutropha [FNYF]
59786
59862
+
Arg
TCT
[ENA]
¡û
>W1710545217
FOBH01000019
Betaproteobacteria
Nitrosovibrio tenuis [FOBH]
10238
10162
-
Arg
TCT
[ENA]
¡û
>W1710547243
FOCT01000012
Betaproteobacteria
Nitrosospira multiformis [FOCT]
65912
65988
+
Arg
TCT
[ENA]
¡û
>W1710548594
FODX01000006
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
60837
60913
+
Arg
TCT
[ENA]
¡û
>W1710553105
FOHI01000002
Betaproteobacteria
Nitrosospira multiformis [FOHI]
59840
59916
+
Arg
TCT
[ENA]
¡û
>W1710554028
FOID01000005
Betaproteobacteria
Nitrosomonas europaea [FOID]
71174
71098
-
Arg
TCT
[ENA]
¡û
>W1710563656
FOPV01000034
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
11913
11989
+
Arg
TCT
[ENA]
¡û
>W1710565292
FORD01000006
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
41978
41902
-
Arg
TCT
[ENA]
¡û
>W1710569047
FOUB01000026
Betaproteobacteria
Nitrosomonas communis [FOUB]
51534
51610
+
Arg
TCT
[ENA]
¡û
>W1710569223
FOUF01000020
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
54455
54379
-
Arg
TCT
[ENA]
¡û
>W1710570779
FOVJ01000003
Betaproteobacteria
Nitrosospira briensis [FOVJ]
46294
46370
+
Arg
TCT
[ENA]
¡û
>W1710571487
FOVY01000010
Betaproteobacteria
Nitrosospira briensis [FOVY]
79572
79496
-
Arg
TCT
[ENA]
¡û
>W1710578257
FPBL01000002
Betaproteobacteria
Nitrosomonas eutropha [FPBL]
95339
95263
-
Arg
TCT
[ENA]
¡û
>W1710578961
FPBZ01000004
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
59525
59601
+
Arg
TCT
[ENA]
¡û
>W1710579585
FPIQ01000018
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
2863
2787
-
Arg
TCT
[ENA]
¡û
>W1710591613
FRBV01000011
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
69666
69590
-
Arg
TCT
[ENA]
¡û
>W1710600389
FUWK01000005
Betaproteobacteria
Nitrosomonas europaea [FUWK]
71399
71323
-
Arg
TCT
[ENA]
¡û
>W1710691943
JZQZ01000303
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
4280
4356
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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