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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272056 (104 seq.)
>W1711075762
LSKR01003669
Actinomycetota
Corynebacterium durum [LSKR]
165
240
+
Arg
CCG
[ENA]
¡û
>W1711102014
LTNI01000063
Actinomycetota
Corynebacterium sp. HMSC22B11 [LTNI]
15816
15743
-
Arg
CCG
[ENA]
¡û
>W131159314
AQUY01000001
Actinomycetota
Corynebacterium ulceribovis DSM 45146 [AQUY]
604572
604497
-
Arg
CCG
[ENA]
¡û
>W1711187638
LWPQ01000023
Actinomycetota
Corynebacterium sp. HMSC27B11 [LWPQ]
93817
93890
+
Arg
CCG
[ENA]
¡û
>W131221666
AUAQ01000015
Actinomycetota
Corynebacterium freiburgense DSM 45254 [AUAQ]
70384
70459
+
Arg
CCG
[ENA]
¡û
>W1711492363
MKKI01000011
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
330871
330944
+
Arg
CCG
[ENA]
¡û
>W141042426
AMEM01000005
Actinomycetota
Corynebacterium durum F0235 [AMEM]
157720
157645
-
Arg
CCG
[ENA]
¡û
>WENV180697346
ODDE01000021
[ODDE] human metagenome; G_DNA_Supragingival plaque
38961
39036
+
Arg
CCG
[ENA]
¡û
>WENV180727982
ODGU01018960
[ODGU] human metagenome; G_DNA_Supragingival plaque
2451
2376
-
Arg
CCG
[ENA]
¡û
>WENV180731437
ODGW01000527
[ODGW] human metagenome; G_DNA_Supragingival plaque
7001
7076
+
Arg
CCG
[ENA]
¡û
>WENV180732375
ODGY01000309
[ODGY] human metagenome; G_DNA_Supragingival plaque
17784
17859
+
Arg
CCG
[ENA]
¡û
>WENV180733740
ODGZ01000658
[ODGZ] human metagenome; G_DNA_Supragingival plaque
8939
9014
+
Arg
CCG
[ENA]
¡û
>WENV180735576
ODHB01000050
[ODHB] human metagenome; G_DNA_Supragingival plaque
12671
12596
-
Arg
CCG
[ENA]
¡û
>WENV180738409
ODHD01000017
[ODHD] human metagenome; G_DNA_Supragingival plaque
159172
159097
-
Arg
CCG
[ENA]
¡û
>WENV180750898
ODHS01011897
[ODHS] human metagenome; G_DNA_Supragingival plaque
1054
1129
+
Arg
CCG
[ENA]
¡û
>WENV180754587
ODHU01000021
[ODHU] human metagenome; G_DNA_Supragingival plaque
12657
12582
-
Arg
CCG
[ENA]
¡û
>WENV180773554
ODIJ01000555
[ODIJ] human metagenome; G_DNA_Tongue dorsum
11131
11204
+
Arg
CCG
[ENA]
¡û
>WENV180777321
ODIL01001839
[ODIL] human metagenome; G_DNA_Supragingival plaque
1943
1868
-
Arg
CCG
[ENA]
¡û
>WENV180777947
ODIM01000113
[ODIM] human metagenome; G_DNA_Supragingival plaque
26464
26539
+
Arg
CCG
[ENA]
¡û
>WENV180781463
ODIP01000151
[ODIP] human metagenome; G_DNA_Supragingival plaque
9902
9827
-
Arg
CCG
[ENA]
¡û
>WENV180787004
ODIS01000900
[ODIS] human metagenome; G_DNA_Supragingival plaque
2413
2338
-
Arg
CCG
[ENA]
¡û
>WENV180800762
ODJD01000878
[ODJD] human metagenome; G_DNA_Supragingival plaque
6485
6560
+
Arg
CCG
[ENA]
¡û
>WENV180803818
ODJG01000081
[ODJG] human metagenome; G_DNA_Supragingival plaque
37907
37832
-
Arg
CCG
[ENA]
¡û
>WENV180805475
ODJH01000018
[ODJH] human metagenome; G_DNA_Tongue dorsum
125935
126008
+
Arg
CCG
[ENA]
¡û
>WENV180813355
ODJO01000411
[ODJO] human metagenome; G_DNA_Supragingival plaque
16387
16312
-
Arg
CCG
[ENA]
¡û
>WENV180822307
ODJT01000268
[ODJT] human metagenome; G_DNA_Supragingival plaque
10875
10950
+
Arg
CCG
[ENA]
¡û
>WENV180831959
ODKC01000294
[ODKC] human metagenome; G_DNA_Supragingival plaque
11235
11160
-
Arg
CCG
[ENA]
¡û
>WENV180833828
ODKD01000398
[ODKD] human metagenome; G_DNA_Supragingival plaque
7281
7356
+
Arg
CCG
[ENA]
¡û
>WENV180845621
ODKT01001255
[ODKT] human metagenome; G_DNA_Supragingival plaque
15105
15180
+
Arg
CCG
[ENA]
¡û
>WENV180887998
ODMN01000011
[ODMN] human metagenome; G_DNA_Supragingival plaque
157143
157068
-
Arg
CCG
[ENA]
¡û
>WENV180891511
ODMQ01000577
[ODMQ] human metagenome; G_DNA_Supragingival plaque
6762
6837
+
Arg
CCG
[ENA]
¡û
>WENV180921952
ODTJ01000798
[ODTJ] human metagenome; G_DNA_Supragingival plaque
12641
12716
+
Arg
CCG
[ENA]
¡û
>WENV180923728
ODTK01000108
[ODTK] human metagenome; G_DNA_Supragingival plaque
45126
45201
+
Arg
CCG
[ENA]
¡û
>WENV180927207
ODTM01000060
[ODTM] human metagenome; G_DNA_Supragingival plaque
16921
16996
+
Arg
CCG
[ENA]
¡û
>WENV180933397
ODTR01000094
[ODTR] human metagenome; G_DNA_Supragingival plaque
51700
51775
+
Arg
CCG
[ENA]
¡û
>WENV180934534
ODTS01000274
[ODTS] human metagenome; G_DNA_Subgingival plaque
17834
17909
+
Arg
CCG
[ENA]
¡û
>WENV180937864
ODTX01000136
[ODTX] human metagenome; G_DNA_Supragingival plaque
15105
15180
+
Arg
CCG
[ENA]
¡û
>WENV180943134
ODUC01000002
[ODUC] human metagenome; G_DNA_Supragingival plaque
156348
156273
-
Arg
CCG
[ENA]
¡û
>WENV180958046
ODUL01000232
[ODUL] human metagenome; G_DNA_Supragingival plaque
15114
15189
+
Arg
CCG
[ENA]
¡û
>WENV180964750
ODUO01016509
[ODUO] human metagenome; G_DNA_Supragingival plaque
349
424
+
Arg
CCG
[ENA]
¡û
>WENV180972831
ODUW01000276
[ODUW] human metagenome; G_DNA_Supragingival plaque
10883
10808
-
Arg
CCG
[ENA]
¡û
>WENV180980350
ODVE01000072
[ODVE] human metagenome; G_DNA_Supragingival plaque
6713
6638
-
Arg
CCG
[ENA]
¡û
>WENV180982698
ODVF01000328
[ODVF] human metagenome; G_DNA_Supragingival plaque
16606
16531
-
Arg
CCG
[ENA]
¡û
>WENV180986761
ODVK01000726
[ODVK] human metagenome; G_DNA_Supragingival plaque
7687
7612
-
Arg
CCG
[ENA]
¡û
>WENV180999613
ODVT01037610
[ODVT] human metagenome; G_DNA_Buccal mucosa
109
34
-
Arg
CCG
[ENA]
¡û
>WENV181002548
ODVX01000626
[ODVX] human metagenome; G_DNA_Supragingival plaque
12664
12589
-
Arg
CCG
[ENA]
¡û
>WENV181007492
ODWE01000139
[ODWE] human metagenome; G_DNA_Supragingival plaque
31382
31307
-
Arg
CCG
[ENA]
¡û
>WENV181012348
ODWK01000052
[ODWK] human metagenome; G_DNA_Supragingival plaque
47796
47871
+
Arg
CCG
[ENA]
¡û
>WENV181019015
ODWU01000381
[ODWU] human metagenome; G_DNA_Supragingival plaque
15104
15179
+
Arg
CCG
[ENA]
¡û
>WENV181029172
ODXF01000004
[ODXF] human metagenome; G_DNA_Supragingival plaque
209123
209198
+
Arg
CCG
[ENA]
¡û
>WENV181049360
ODYD01000062
[ODYD] human metagenome; G_DNA_Supragingival plaque
16623
16548
-
Arg
CCG
[ENA]
¡û
>WENV181063104
ODYP01000074
[ODYP] human metagenome; G_DNA_Supragingival plaque
39758
39683
-
Arg
CCG
[ENA]
¡û
>WENV181066692
ODZI01000977
[ODZI] human metagenome; G_DNA_Supragingival plaque
7214
7289
+
Arg
CCG
[ENA]
¡û
>WENV181075985
OEAP01001038
[OEAP] human metagenome; G_DNA_Supragingival plaque
3260
3185
-
Arg
CCG
[ENA]
¡û
>WENV181079571
OEAS01009350
[OEAS] human metagenome; G_DNA_Supragingival plaque
4177
4252
+
Arg
CCG
[ENA]
¡û
>WENV181082097
OEAT01000002
[OEAT] human metagenome; G_DNA_Supragingival plaque
159090
159015
-
Arg
CCG
[ENA]
¡û
>WENV181082567
OEAV01000083
[OEAV] human metagenome; G_DNA_Supragingival plaque
37221
37296
+
Arg
CCG
[ENA]
¡û
>WENV181090471
OEBC01000572
[OEBC] human metagenome; G_DNA_Supragingival plaque
9157
9082
-
Arg
CCG
[ENA]
¡û
>WENV181106691
OEEI01000037
[OEEI] human metagenome; G_DNA_Supragingival plaque
15759
15834
+
Arg
CCG
[ENA]
¡û
>WENV181121039
OEFL01000202
[OEFL] human metagenome; G_DNA_Supragingival plaque
17533
17608
+
Arg
CCG
[ENA]
¡û
>WENV181123727
OEFQ01000577
[OEFQ] human metagenome; G_DNA_Supragingival plaque
9416
9341
-
Arg
CCG
[ENA]
¡û
>WENV181137119
OEGJ01000324
[OEGJ] human metagenome; G_DNA_Supragingival plaque
12667
12592
-
Arg
CCG
[ENA]
¡û
>WENV181142885
OEHM01000002
[OEHM] human metagenome; G_DNA_Supragingival plaque
234671
234746
+
Arg
CCG
[ENA]
¡û
>WENV181146179
OEHQ01001580
[OEHQ] human metagenome; G_DNA_Supragingival plaque
104
29
-
Arg
CCG
[ENA]
¡û
>WENV181151970
OEIA01000003
[OEIA] human metagenome; G_DNA_Supragingival plaque
153993
153918
-
Arg
CCG
[ENA]
¡û
>WENV181155913
OEIE01000658
[OEIE] human metagenome; G_DNA_Supragingival plaque
7288
7363
+
Arg
CCG
[ENA]
¡û
>WENV181158403
OEIH01001044
[OEIH] human metagenome; G_DNA_Supragingival plaque
8029
8104
+
Arg
CCG
[ENA]
¡û
>WENV181160618
OEIK01017280
[OEIK] human metagenome; G_DNA_Supragingival plaque
189
264
+
Arg
CCG
[ENA]
¡û
>WENV181178765
OEJT01000225
[OEJT] human metagenome; G_DNA_Supragingival plaque
42536
42611
+
Arg
CCG
[ENA]
¡û
>WENV181180539
OEJU01000196
[OEJU] human metagenome; G_DNA_Supragingival plaque
12666
12591
-
Arg
CCG
[ENA]
¡û
>WENV181181608
OEJV01000016
[OEJV] human metagenome; G_DNA_Supragingival plaque
157882
157807
-
Arg
CCG
[ENA]
¡û
>C08003953
AM942444
Actinomycetota
Corynebacterium urealyticum DSM 7109 [AM942444]
829574
829501
-
Arg
CCG
[Ensembl]
¡û
>WENV183511821
OMJG01005378
[OMJG] food metagenome; Cotija cheese
2174
2101
-
Arg
CCG
[ENA]
¡û
>C181110026
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1159843
1159770
-
Arg
CCG
-
¡û
>C181226762
LT906481
Actinomycetota
Corynebacterium urealyticum NCTC12011 [LT906481]
140501
140428
-
Arg
CCG
-
¡û
>W1910183444
BJNT01000001
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
83315
83388
+
Arg
CCG
[ENA]
¡û
>C141004810
CP006365
Actinomycetota
Corynebacterium argentoratense DSM 44202 [CP006365]
762410
762337
-
Arg
CCG
[Ensembl]
¡û
>C151013316
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
1404113
1404040
-
Arg
CCG
[Ensembl]
¡û
>W2010097059
BJNT01000001
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
83315
83388
+
Arg
CCG
[ENA]
¡û
>W2010274835
CABKVS020000001
Actinomycetota
Corynebacterium provencense [CABKVS]
292355
292428
+
Arg
CCG
[ENA]
¡û
>W2010674952
JACCFR010000001
Actinomycetota
Corynebacterium durum DSM 45333 [JACCFR]
305849
305774
-
Arg
CCG
[ENA]
¡û
>W2011957703
UZAZ01000003
Actinomycetota
Corynebacterium sp. Marseille-P3888 [UZAZ]
390874
390947
+
Arg
CCG
[ENA]
¡û
>W2011993623
VDYZ01000003
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 DE0385 [VDYZ]
117797
117870
+
Arg
CCG
[ENA]
¡û
>W2012103192
VOHM01000002
Actinomycetota
Corynebacterium canis CCUG 58627 [VOHM]
61350
61275
-
Arg
CCG
[ENA]
¡û
>W2012136182
VSZI01000001
Actinomycetota
Corynebacterium urealyticum VH4248 [VSZI]
1504051
1504124
+
Arg
CCG
[ENA]
¡û
>W2012136223
VSZJ01000001
Actinomycetota
Corynebacterium urealyticum VH4549 [VSZJ]
1150024
1150097
+
Arg
CCG
[ENA]
¡û
>W2012136304
VSZK01000001
Actinomycetota
Corynebacterium urealyticum VH5913 [VSZK]
992000
991927
-
Arg
CCG
[ENA]
¡û
>W2012139229
VTFJ01000001
Actinomycetota
Corynebacterium urealyticum VH3073 [VTFJ]
299290
299217
-
Arg
CCG
[ENA]
¡û
>C201112060
CP042429
Actinomycetota
Corynebacterium nuruki S6-4 [CP042429]
151655
151582
-
Arg
CCG
-
¡û
>C211218982
CP065982
Actinomycetota
Corynebacterium urealyticum FDAARGOS_996 [CP065982]
470330
470257
-
Arg
CCG
-
¡û
>C211221562
CP066064
Actinomycetota
Corynebacterium urealyticum FDAARGOS_994 [CP066064]
2149373
2149446
+
Arg
CCG
-
¡û
>W10124067
AEAU01000050
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
60091
60018
-
Arg
CCG
[ENA]
¡û
>C11106665
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
2115568
2115641
+
Arg
CCG
[Ensembl]
¡û
>W11130904
AEAU01000050
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
60091
60018
-
Arg
CCG
[ENA]
¡û
>W1511542058
JZEZ01000050
Actinomycetota
Corynebacterium argentoratense CNM 463/05 [JZEZ]
13678
13605
-
Arg
CCG
[ENA]
¡û
>W1511542063
JZFA01000005
Actinomycetota
Corynebacterium argentoratense CNM 601/08 [JZFA]
62467
62394
-
Arg
CCG
[ENA]
¡û
>W11164147
AFIZ01000010
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
64400
64473
+
Arg
CCG
[ENA]
¡û
>W1610163638
FAUH01000008
Actinomycetota
Corynebacterium variabile [FAUH]
57608
57535
-
Arg
CCG
[ENA]
¡û
>W1610419397
FIZC01000003
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
215682
215755
+
Arg
CCG
[ENA]
¡û
>C131005331
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1744623
1744698
+
Arg
CCG
[Ensembl]
¡û
>C131012723
CP004085
Actinomycetota
Corynebacterium urealyticum DSM 7111 [CP004085]
818903
818830
-
Arg
CCG
[Ensembl]
¡û
>W1610915067
LSKR01003669
Actinomycetota
Corynebacterium durum [LSKR]
165
240
+
Arg
CCG
[ENA]
¡û
>W1710165305
FAUH01000008
Actinomycetota
Corynebacterium variabile [FAUH]
57608
57535
-
Arg
CCG
[ENA]
¡û
>W1710419133
FIZC01000003
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
215682
215755
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK