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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272104 (108 seq.)
>W1711631529
MPRJ01000027
Gammaproteobacteria
Solemya velesiana gill symbiont gill symbiont [MPRJ]
9522
9446
-
Pro
CGG
[ENA]
¡û
>C171071293
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
342967
342894
-
Pro
CGG
-
¡û
>C171073897
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
527448
527375
-
Pro
CGG
-
¡û
>C171110923
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
342965
342892
-
Pro
CGG
-
¡û
>C171127868
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
343011
342938
-
Pro
CGG
-
¡û
>W131220218
ATZE01000023
Gammaproteobacteria
Sedimenticola selenatireducens DSM 17993 [ATZE]
27889
27965
+
Pro
CGG
[ENA]
¡û
>W131249958
CAUE01000103
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
2031
2104
+
Pro
CGG
[ENA]
¡û
>W131251104
CAVF010000005
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
118503
118430
-
Pro
CGG
[ENA]
¡û
>C005241
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
342959
342886
-
Pro
CGG
[Ensembl]
¡û
>w024156
AAYJ01000008
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
43307
43231
-
Pro
CGG
[ENA]
¡û
>w020070
AAUP01000006
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
41636
41560
-
Pro
CGG
[ENA]
¡û
>w016784
AAQO01000067
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
847
771
-
Pro
CGG
[ENA]
¡û
>w016636
AAQI01000007
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
60892
60816
-
Pro
CGG
[ENA]
¡û
>WENV180051178
MPLU02196201
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
1048
1124
+
Pro
CGG
[ENA]
¢þ
>WENV180060317
MPLX02162362
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
4646
4570
-
Pro
CGG
[ENA]
¢þ
>WENV180062321
MPLX02279841
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
1011
935
-
Pro
CGG
[ENA]
¢þ
>WENV180063778
MPLX02375307
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
661
585
-
Pro
CGG
[ENA]
¢þ
>WENV180068939
MPLZ02075725
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
93
17
-
Pro
CGG
[ENA]
¢þ
>WENV180083588
MPMD02081206
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
156
80
-
Pro
CGG
[ENA]
¢þ
>WENV180088092
MPMF02011849
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
7764
7840
+
Pro
CGG
[ENA]
¢þ
>WENV180089983
MPMF02113820
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
2500
2576
+
Pro
CGG
[ENA]
¢þ
>WENV180093152
MPMF02303572
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
4697
4621
-
Pro
CGG
[ENA]
¢þ
>W141027223
AKYP01000001
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
1985
2058
+
Pro
CGG
[ENA]
¡û
>WENV180351028
OBLQ010022008
[OBLQ] soil metagenome; soil
726
650
-
Pro
CGG
[ENA]
¢þ
>WENV181305767
OFIH01014672
[OFIH] marine metagenome; seawater
157
233
+
Pro
CGG
[ENA]
¢þ
>WENV181307195
OFIP01003924
[OFIP] marine metagenome; seawater
401
477
+
Pro
CGG
[ENA]
¢þ
>WENV181309730
OFIX01002120
[OFIX] marine metagenome; seawater
147
223
+
Pro
CGG
[ENA]
¢þ
>WENV181310527
OFIZ01044542
[OFIZ] marine metagenome; seawater
310
234
-
Pro
CGG
[ENA]
¢þ
>WENV181315286
OFJO01001451
[OFJO] marine metagenome; seawater
572
648
+
Pro
CGG
[ENA]
¢þ
>WENV181316023
OFJR01013893
[OFJR] marine metagenome; seawater
451
375
-
Pro
CGG
[ENA]
¢þ
>WENV181319011
OFKC01003100
[OFKC] marine metagenome; seawater
443
367
-
Pro
CGG
[ENA]
¢þ
>C08003008
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
1679631
1679704
+
Pro
CGG
[Ensembl]
¡û
>C08003072
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
419074
419001
-
Pro
CGG
[Ensembl]
¡û
>W141254775
CBTH010000003
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
6721
6648
-
Pro
CGG
[ENA]
¡û
>W141260650
CCAH010000005
Gammaproteobacteria
Coxiella burnetii [CCAH]
119336
119263
-
Pro
CGG
[ENA]
¡û
>W141260692
CCAI010000005
Gammaproteobacteria
Coxiella burnetii [CCAI]
118416
118343
-
Pro
CGG
[ENA]
¡û
>W141260734
CCAJ010000010
Gammaproteobacteria
Coxiella burnetii [CCAJ]
97456
97383
-
Pro
CGG
[ENA]
¡û
>W141260777
CCAK010000047
Gammaproteobacteria
Coxiella burnetii [CCAK]
7609
7536
-
Pro
CGG
[ENA]
¡û
>W141260778
CCAK010000048
Gammaproteobacteria
Coxiella burnetii [CCAK]
220
147
-
Pro
CGG
[ENA]
¡û
>W141260809
CCAK010000201
Gammaproteobacteria
Coxiella burnetii [CCAK]
927
854
-
Pro
CGG
[ENA]
¡û
>W141260827
CCAL010000005
Gammaproteobacteria
Coxiella burnetii [CCAL]
118364
118291
-
Pro
CGG
[ENA]
¡û
>W141260870
CCAM010000011
Gammaproteobacteria
Coxiella burnetii [CCAM]
32804
32731
-
Pro
CGG
[ENA]
¡û
>W141267621
CCNR01000057
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
2022
2095
+
Pro
CGG
[ENA]
¡û
>WENV183626670
OOGJ01007930
[OOGJ] marine metagenome; seawater
263
339
+
Pro
CGG
[ENA]
¢þ
>WENV183794158
PVBE010074075
[PVBE] marine metagenome; water
6356
6280
-
Pro
CGG
[ENA]
¢þ
>WENV183794230
PVBE010079500
[PVBE] marine metagenome; water
755
679
-
Pro
CGG
[ENA]
¢þ
>WENV183794440
PVBE010098115
[PVBE] marine metagenome; water
516
592
+
Pro
CGG
[ENA]
¢þ
>WENV183801333
PVBE010666786
[PVBE] marine metagenome; water
174
98
-
Pro
CGG
[ENA]
¢þ
>WENV183806068
PVBE011080920
[PVBE] marine metagenome; water
2505
2429
-
Pro
CGG
[ENA]
¢þ
>WENV170013097
ATLU01000011
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
92806
92882
+
Pro
CGG
[ENA]
¢þ
>WENV170013971
AVFP01000780
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
1052
976
-
Pro
CGG
[ENA]
¢þ
>WENV170487274
CEVO01041420
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
202
126
-
Pro
CGG
[ENA]
¢þ
>WENV170599916
FUWD010098151
[FUWD] metagenome; unknown
165
89
-
Pro
CGG
[ENA]
¢þ
>WENV170618415
FUWD012967043
[FUWD] metagenome; unknown
196
272
+
Pro
CGG
[ENA]
¢þ
>WENV170620745
FUWD013038142
[FUWD] metagenome; unknown
270
346
+
Pro
CGG
[ENA]
¢þ
>WENV170628888
FUWD013255324
[FUWD] metagenome; unknown
270
346
+
Pro
CGG
[ENA]
¢þ
>WENV170762821
LWDU01000016
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
14655
14579
-
Pro
CGG
[ENA]
¢þ
>WENV170764122
LWDU01030945
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
906
830
-
Pro
CGG
[ENA]
¢þ
>WENV170870211
MDTB01188406
[MDTB] marine metagenome; seawater
190
114
-
Pro
CGG
[ENA]
¢þ
>WENV170884985
MDTC01193902
[MDTC] marine metagenome; seawater
93
17
-
Pro
CGG
[ENA]
¢þ
>WENV170946805
MDUS01004091
[MDUS] marine metagenome; 300 m water sample from station 6
1102
1178
+
Pro
CGG
[ENA]
¢þ
>C191091558
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
956415
956342
-
Pro
CGG
-
¡û
>C191134942
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
623540
623467
-
Pro
CGG
-
¡û
>C191174680
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
342828
342755
-
Pro
CGG
-
¡û
>W141810524
JPVV01000015
Gammaproteobacteria
Coxiella burnetii [JPVV]
104871
104798
-
Pro
CGG
[ENA]
¡û
>C09102982
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
1579295
1579368
+
Pro
CGG
[Ensembl]
¡û
>C09103049
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
527451
527378
-
Pro
CGG
[Ensembl]
¡û
>W1911118970
NOLM01000021
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
2215
2288
+
Pro
CGG
[ENA]
¡û
>W1911119012
NOLN01000020
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
2215
2288
+
Pro
CGG
[ENA]
¡û
>W1911119032
NOLO01000002
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
305103
305030
-
Pro
CGG
[ENA]
¡û
>W1911119096
NOLP01000035
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
2196
2269
+
Pro
CGG
[ENA]
¡û
>W1911119116
NOLQ01000002
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
305068
304995
-
Pro
CGG
[ENA]
¡û
>W1911119160
NOLR01000005
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
118294
118221
-
Pro
CGG
[ENA]
¡û
>W1911119200
NOLS01000002
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
305101
305028
-
Pro
CGG
[ENA]
¡û
>W1911119242
NOLT01000002
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
305101
305028
-
Pro
CGG
[ENA]
¡û
>W1911119284
NOLU01000002
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
305101
305028
-
Pro
CGG
[ENA]
¡û
>W1911119326
NOLV01000002
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
305101
305028
-
Pro
CGG
[ENA]
¡û
>W1911136625
NOVF01000002
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
305101
305028
-
Pro
CGG
[ENA]
¡û
>W1911136670
NOVG01000003
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
83308
83235
-
Pro
CGG
[ENA]
¡û
>W1911136709
NOVH01000002
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
305103
305030
-
Pro
CGG
[ENA]
¡û
>W1911136753
NOVI01000007
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
97297
97224
-
Pro
CGG
[ENA]
¡û
>W1911136793
NOVJ01000002
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
305091
305018
-
Pro
CGG
[ENA]
¡û
>W1911136835
NOVK01000002
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
305091
305018
-
Pro
CGG
[ENA]
¡û
>W1810059850
PDLP01000018
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
2771
2844
+
Pro
CGG
[ENA]
¡û
>W1810196650
PNEV01000186
Gammaproteobacteria
Gammaproteobacteria bacterium E01.OSU.003 [PNEV]
2550
2474
-
Pro
CGG
[ENA]
¡û
>W1810235684
PPFM01000004
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
2175
2248
+
Pro
CGG
[ENA]
¡û
>W1810235730
PPFN01000008
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
2175
2248
+
Pro
CGG
[ENA]
¡û
>W1810235768
PPFO01000004
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
2175
2248
+
Pro
CGG
[ENA]
¡û
>W1810235801
PPFP01000016
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
2199
2272
+
Pro
CGG
[ENA]
¡û
>W1810235852
PPFQ01000004
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
2175
2248
+
Pro
CGG
[ENA]
¡û
>W1810235879
PPFR01000004
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
2111
2184
+
Pro
CGG
[ENA]
¡û
>SRA1009596
SRR020491.289619
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
155
79
-
Pro
CGG
[SRA]
>C151082460
CP011412
Gammaproteobacteria
Sedimenticola thiotaurini SIP-G1 [CP011412]
3217571
3217495
-
Pro
CGG
[Ensembl]
¡û
>C151102395
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
342995
342922
-
Pro
CGG
-
¡û
>W1510060737
CCXO01000001
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
504614
504541
-
Pro
CGG
[ENA]
¡û
>W1510061141
CCYB01000057
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
2022
2095
+
Pro
CGG
[ENA]
¡û
>W1510064651
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
366484
366411
-
Pro
CGG
[ENA]
¡û
>W1510064652
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
366235
366162
-
Pro
CGG
[ENA]
¡û
>W1510064653
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
365279
365206
-
Pro
CGG
[ENA]
¡û
>W1511555132
JZWL01000002
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
63456
63529
+
Pro
CGG
[ENA]
¡û
>W11175998
AFWS01000002
Gammaproteobacteria
Thiorhodovibrio frisius 970 [AFWS]
220216
220292
+
Pro
CGG
[ENA]
¡û
>C161017369
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
526423
526350
-
Pro
CGG
[Ensembl]
¡û
>C161059064
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
956496
956423
-
Pro
CGG
-
¡û
>C161071929
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
898677
898604
-
Pro
CGG
-
¡û
>C161095382
CP016268
Gammaproteobacteria
Woeseia oceani XK5 [CP016268]
2514321
2514397
+
Pro
CGG
[Ensembl]
¡û
>W1610599320
LFLB01000021
Gammaproteobacteria
Candidatus Spongiihabitans thiooxidans LS_SOB [LFLB]
18314
18238
-
Pro
CGG
[ENA]
¡û
>WENV080933
ABEF01015261
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
470
548
+
Pro
CGG
[ENA]
>W1710720752
LFLB01000021
Gammaproteobacteria
Candidatus Spongiihabitans thiooxidans LS_SOB [LFLB]
18314
18238
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK