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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272172 (38 seq.)
>W1711229617
LXYP01000017
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
2019
2095
+
Ile
GAT
[ENA]
¡û
>WENV180069867
MPLZ02134713
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
47
123
+
Ile
GAT
[ENA]
¢þ
>WENV180074002
MPMA02114124
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
843
767
-
Ile
GAT
[ENA]
¢þ
>WENV180074004
MPMA02114149
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
516
440
-
Ile
GAT
[ENA]
¢þ
>WENV180091318
MPMF02188285
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
768
844
+
Ile
GAT
[ENA]
¢þ
>WENV181209524
OFBE01006854
[OFBE] metagenome; hydrothermal vent
427
503
+
Ile
GAT
[ENA]
¢þ
>WENV181216269
OFCB01014550
[OFCB] metagenome; hydrothermal vent
33
109
+
Ile
GAT
[ENA]
¢þ
>WENV181228152
OFDO01001133
[OFDO] metagenome; hydrothermal vent
2128
2052
-
Ile
GAT
[ENA]
¢þ
>WENV181403498
OFUB01000660
[OFUB] marine metagenome; seawater
259
335
+
Ile
GAT
[ENA]
¢þ
>W141202884
AZHQ01000013
Alphaproteobacteria
alpha proteobacterium SCGC AAA288-E13 [AZHQ]
5222
5298
+
Ile
GAT
[ENA]
¡û
>WENV182589669
OJIF01001213
[OJIF] seawater metagenome; Sea water
715
639
-
Ile
GAT
[ENA]
¢þ
>WENV183799543
PVBE010515301
[PVBE] marine metagenome; water
738
662
-
Ile
GAT
[ENA]
¢þ
>WENV183809994
PVBE011439970
[PVBE] marine metagenome; water
517
441
-
Ile
GAT
[ENA]
¢þ
>WENV170598423
FUWD010034993
[FUWD] metagenome; unknown
364
288
-
Ile
GAT
[ENA]
¢þ
>WENV170945962
MDUQ01007151
[MDUQ] marine metagenome; 100 m water sample from station 6
885
809
-
Ile
GAT
[ENA]
¢þ
>WENV170947181
MDUS01031105
[MDUS] marine metagenome; 300 m water sample from station 6
359
283
-
Ile
GAT
[ENA]
¢þ
>C181062158
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1540746
1540670
-
Ile
GAT
-
¡û
>C181062161
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1530315
1530239
-
Ile
GAT
-
¡û
>C181068286
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
320735
320659
-
Ile
GAT
-
¡û
>C181068289
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
303960
303884
-
Ile
GAT
-
¡û
>W1810527932
QCSA01000029
Alphaproteobacteria
Pelagibacteraceae bacterium AG-464-P07 [QCSA]
4033
3957
-
Ile
GAT
[ENA]
¡û
>SRA1009990
SRR020491.422597
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
84
160
+
Ile
GAT
[SRA]
>SRA1011571
SRR020492.470278
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
163
239
+
Ile
GAT
[SRA]
>SRA1013083
SRR020514.2626
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
3
79
+
Ile
GAT
[SRA]
>SRA1013248
SRR020514.88088
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
3
79
+
Ile
GAT
[SRA]
>C161073946
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
815044
815120
+
Ile
GAT
[Ensembl]
¡û
>C161073949
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
830145
830221
+
Ile
GAT
[Ensembl]
¡û
>W1611013487
LXYP01000017
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
2019
2095
+
Ile
GAT
[ENA]
¡û
>WENV078503
AAGA01024520
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
472
550
+
Ile
GAT
[ENA]
>ENV000251
AF151277
Environmental sample from ENV division of INSDC
794
870
+
Ile
GAT
[ENA]
>ENV001018
AY458633
Environmental sample from ENV division of INSDC
9609
9685
+
Ile
GAT
[ENA]
>ENV001704
AY933705
Environmental sample from ENV division of INSDC
121
197
+
Ile
GAT
[ENA]
>ENV001767
AY933739
Environmental sample from ENV division of INSDC
119
195
+
Ile
GAT
[ENA]
>ENV002174
AY933955
Environmental sample from ENV division of INSDC
114
190
+
Ile
GAT
[ENA]
>ENV002225
AY933982
Environmental sample from ENV division of INSDC
119
195
+
Ile
GAT
[ENA]
>ENV002241
AY933990
Environmental sample from ENV division of INSDC
124
200
+
Ile
GAT
[ENA]
>ENV002524
AY934157
Environmental sample from ENV division of INSDC
120
196
+
Ile
GAT
[ENA]
>ENV002693
AY934244
Environmental sample from ENV division of INSDC
121
197
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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