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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272218 (43 seq.)
>W1710892750
LNEB01000015
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
308389
308464
+
Phe
GAA
[ENA]
¡û
>W1711124477
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
1359308
1359233
-
Phe
GAA
[ENA]
¡û
>W1711124513
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1258666
1258591
-
Phe
GAA
[ENA]
¡û
>W1711124535
LUKF01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
449925
449850
-
Phe
GAA
[ENA]
¡û
>W1712010645
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
2228566
2228491
-
Phe
GAA
[ENA]
¡û
>C001974
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
3666784
3666709
-
Phe
GAA
[Ensembl]
¡û
>WENV180748410
ODHN01169187
[ODHN] human metagenome; G_DNA_Stool
177
102
-
Phe
GAA
[ENA]
¡û
>WENV181381268
OFRE01052977
[OFRE] wastewater metagenome; Exp Tend NO 50WW
509
434
-
Phe
GAA
[ENA]
¡û
>WENV181480981
OGFI01000056
[OGFI] metagenome; Human gut stool
30195
30120
-
Phe
GAA
[ENA]
¡û
>WENV181897595
OGXT01000414
[OGXT] human gut metagenome; faeces
50650
50725
+
Phe
GAA
[ENA]
¡û
>WENV181990956
OHAQ01000013
[OHAQ] human gut metagenome; faeces
34881
34806
-
Phe
GAA
[ENA]
¡û
>WENV182683618
OJNX01002322
[OJNX] human gut metagenome; human gut
1718
1793
+
Phe
GAA
[ENA]
¡û
>WENV182699065
OJON01002654
[OJON] human gut metagenome; human gut
412
487
+
Phe
GAA
[ENA]
¡û
>WENV183123448
OLNW01000852
[OLNW] human gut metagenome; faeces
10048
10123
+
Phe
GAA
[ENA]
¡û
>WENV183151463
OLOQ01000149
[OLOQ] human gut metagenome; faeces
38214
38289
+
Phe
GAA
[ENA]
¡û
>WENV183160366
OLOV01000120
[OLOV] human gut metagenome; faeces
53230
53305
+
Phe
GAA
[ENA]
¡û
>WENV183164687
OLOX01000683
[OLOX] human gut metagenome; faeces
10103
10178
+
Phe
GAA
[ENA]
¡û
>WENV183199764
OLPW01000174
[OLPW] human gut metagenome; faeces
10210
10285
+
Phe
GAA
[ENA]
¡û
>WENV183277519
OLSA01001252
[OLSA] human gut metagenome; faeces
10840
10915
+
Phe
GAA
[ENA]
¡û
>WENV183417051
OMAS01046839
[OMAS] human gut metagenome; feces
161
236
+
Phe
GAA
[ENA]
¡û
>WENV170101853
CEAR01050525
[CEAR] gut metagenome; human stools
7728
7803
+
Phe
GAA
[ENA]
¡û
>WENV170109249
CECA01070405
[CECA] gut metagenome; human stools
7782
7857
+
Phe
GAA
[ENA]
¡û
>WENV170167317
CEOP01001787
[CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
197
122
-
Phe
GAA
[ENA]
¡û
>WENV170617108
FUWD012914601
[FUWD] metagenome; unknown
81
6
-
Phe
GAA
[ENA]
¡û
>WENV170708864
LNFM01000008
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
114600
114525
-
Phe
GAA
[ENA]
¡û
>C181047759
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
141775
141850
+
Phe
GAA
-
¡û
>C151003363
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
2918738
2918663
-
Phe
GAA
[Ensembl]
¡û
>C151031141
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
2381293
2381218
-
Phe
GAA
[Ensembl]
¡û
>C151087488
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
3549864
3549789
-
Phe
GAA
-
¡û
>C211116551
CP058348
Bdellovibrionota
Bdellovibrio sp. KM01 [CP058348]
3854419
3854344
-
Phe
GAA
-
¡û
>C231334539
CP093442
Bdellovibrionota
Bdellovibrio reynosensis LBG001 [CP093442]
2642469
2642544
+
Phe
GAA
-
¡û
>C231461123
CP102930
Bdellovibrionota
Bdellovibrio bacteriovorus kdesi [CP102930]
1231110
1231185
+
Phe
GAA
-
¡û
>C231505516
CP106855
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [CP106855]
1744811
1744886
+
Phe
GAA
-
¡û
>C241033507
CP030034
Bdellovibrionota
Bdellovibrio sp. NC01 [CP030034]
3862290
3862215
-
Phe
GAA
-
¡û
>C241033746
CP030082
Bdellovibrionota
Bdellovibrio sp. ZAP7 [CP030082]
4017641
4017566
-
Phe
GAA
-
¡û
>C241261610
CP125854
Bdellovibrionota
Bdellovibrio sp. 22V [CP125854]
489314
489239
-
Phe
GAA
-
¡û
>W1511399669
JTEV01000019
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
51621
51696
+
Phe
GAA
[ENA]
¡û
>C131001661
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
3880332
3880257
-
Phe
GAA
[Ensembl]
¡û
>C131004041
CP003537
Bdellovibrionota
Pseudobdellovibrio exovorus JSS [CP003537]
2536089
2536014
-
Phe
GAA
[Ensembl]
¡û
>W1610753016
LNEB01000015
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
308389
308464
+
Phe
GAA
[ENA]
¡û
>W1610935417
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
1359308
1359233
-
Phe
GAA
[ENA]
¡û
>W1610935453
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1258666
1258591
-
Phe
GAA
[ENA]
¡û
>W1610935475
LUKF01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
449925
449850
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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