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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272303 (42 seq.)
>W1711502767
MKSZ01000112
Bacteroidota
Bacteroidales bacterium 36-12 [MKSZ]
29332
29255
-
Pro
TGG
[ENA]
¡û
>W1711629348
MPOV01000087
Bacteroidota
Proteiniphilum sp. EBM-39 [MPOV]
29022
28945
-
Pro
TGG
[ENA]
¡û
>C171129288
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
1374829
1374904
+
Pro
TGG
-
¡û
>WENV180334067
OBLF01004463
[OBLF] metagenome; feces
7086
7161
+
Pro
TGG
[ENA]
¡û
>WENV180340549
OBLI01029427
[OBLI] pig gut metagenome; faeces
1729
1804
+
Pro
TGG
[ENA]
¡û
>WENV180905270
ODPF01009516
[ODPF] human metagenome; G_DNA_Stool
2546
2621
+
Pro
TGG
[ENA]
¡û
>WENV182530993
OIWV01021044
[OIWV] human gut metagenome; faeces
145
70
-
Pro
TGG
[ENA]
¡û
>WENV182533502
OIXA01029291
[OIXA] human gut metagenome; faeces
1939
2014
+
Pro
TGG
[ENA]
¡û
>WENV182534134
OIXG01000166
[OIXG] human gut metagenome; faeces
74754
74829
+
Pro
TGG
[ENA]
¡û
>WENV182676869
OJNR01001449
[OJNR] human gut metagenome; human gut
875
800
-
Pro
TGG
[ENA]
¡û
>WENV183027669
OLFV01000240
[OLFV] human gut metagenome; faeces
54450
54375
-
Pro
TGG
[ENA]
¡û
>WENV183033435
OLFY01003431
[OLFY] human gut metagenome; faeces
12659
12734
+
Pro
TGG
[ENA]
¡û
>WENV183051732
OLGJ01001933
[OLGJ] human gut metagenome; faeces
8192
8267
+
Pro
TGG
[ENA]
¡û
>WENV183271084
OLRV01056701
[OLRV] human gut metagenome; faeces
126
51
-
Pro
TGG
[ENA]
¡û
>WENV183353923
OLXB01003736
[OLXB] human gut metagenome; feces
218
143
-
Pro
TGG
[ENA]
¡û
>WENV183373984
OLXY01014520
[OLXY] human gut metagenome; feces
158
83
-
Pro
TGG
[ENA]
¡û
>WENV170560940
CZCA01001297
[CZCA] anaerobic digester metagenome; anaerobic digester
15
92
+
Pro
TGG
[ENA]
¡û
>WENV170563046
CZCB01009184
[CZCB] anaerobic digester metagenome; anaerobic digester
3176
3253
+
Pro
TGG
[ENA]
¡û
>WENV170656032
JTFN01118790
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
221
296
+
Pro
TGG
[ENA]
¡û
>WENV170656376
JTFO01011875
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
151
226
+
Pro
TGG
[ENA]
¡û
>WENV170677118
LDZT01002650
[LDZT] terrestrial metagenome; oil reservoir sample SB1
94
169
+
Pro
TGG
[ENA]
¡û
>WENV170679027
LDZU01006694
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1268
1343
+
Pro
TGG
[ENA]
¡û
>WENV170717780
LSQX01049595
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
75
152
+
Pro
TGG
[ENA]
¡û
>WENV170718364
LSQX01072529
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1286
1361
+
Pro
TGG
[ENA]
¡û
>WENV170719640
LSQX01121511
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2665
2742
+
Pro
TGG
[ENA]
¡û
>WENV170720058
LSQX01139225
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6104
6029
-
Pro
TGG
[ENA]
¡û
>WENV170720719
LSQX01163621
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4
79
+
Pro
TGG
[ENA]
¡û
>WENV170967523
MTKW01001791
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5323
5400
+
Pro
TGG
[ENA]
¡û
>WENV170967920
MTKW01004418
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
39690
39615
-
Pro
TGG
[ENA]
¡û
>WENV170968929
MTKW01016950
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9
86
+
Pro
TGG
[ENA]
¡û
>WENV170969934
MTKW01045436
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
95
18
-
Pro
TGG
[ENA]
¡û
>C181102355
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
115404
115329
-
Pro
TGG
-
¡û
>C181123631
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
564956
565031
+
Pro
TGG
-
¡û
>W1911247383
NSLL01000013
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
47211
47136
-
Pro
TGG
[ENA]
¡û
>W1911247909
NSLX01000052
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
10777
10702
-
Pro
TGG
[ENA]
¡û
>W2011070888
NSLL01000013
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
47211
47136
-
Pro
TGG
[ENA]
¡û
>W2011071414
NSLX01000052
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
10777
10702
-
Pro
TGG
[ENA]
¡û
>C211273652
CP070276
Bacteroidota
Dysgonomonadaceae bacterium zrk40 [CP070276]
2277882
2277957
+
Pro
TGG
-
¡û
>C11117307
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
1965359
1965436
+
Pro
TGG
[Ensembl]
¡û
>W1610614533
LGHH01000237
Bacteroidota
Proteiniphilum sp. 51_7 [LGHH]
1268
1343
+
Pro
TGG
[ENA]
¡û
>W1710578566
FPBR01000018
Bacteroidota
Porphyromonadaceae bacterium KHP3R9 [FPBR]
45182
45107
-
Pro
TGG
[ENA]
¡û
>W1710735514
LGHH01000237
Bacteroidota
Proteiniphilum sp. 51_7 [LGHH]
1268
1343
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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