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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272325 (17 seq.)
>W1911424693
NXGL01000004
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGCAS [NXGL]
31651
31574
-
Gly
GCC
[ENA]
¡û
>W1911424697
NXGM01000002
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGNEO [NXGM]
33353
33429
+
Gly
GCC
[ENA]
¡û
>W1911424700
NXGM01000109
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGNEO [NXGM]
72552
72476
-
Gly
GCC
[ENA]
¡û
>W1911424703
NXGN01000004
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGSEP [NXGN]
33203
33127
-
Gly
GCC
[ENA]
¡û
>W1911424708
NXGO01000005
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGTDC [NXGO]
18523
18447
-
Gly
GCC
[ENA]
¡û
>W1911424725
NXGQ01000006
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGSDC [NXGQ]
18506
18430
-
Gly
GCC
[ENA]
¡û
>W1911424730
NXGR01000003
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGTCS [NXGR]
18723
18800
+
Gly
GCC
[ENA]
¡û
>W1911424739
NXGT01000003
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGTRE [NXGT]
29230
29154
-
Gly
GCC
[ENA]
¡û
>W2011144375
NXGL01000004
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGCAS [NXGL]
31651
31574
-
Gly
GCC
[ENA]
¡û
>W2011144379
NXGM01000002
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGNEO [NXGM]
33353
33429
+
Gly
GCC
[ENA]
¡û
>W2011144382
NXGM01000109
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGNEO [NXGM]
72552
72476
-
Gly
GCC
[ENA]
¡û
>W2011144385
NXGN01000004
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGSEP [NXGN]
33203
33127
-
Gly
GCC
[ENA]
¡û
>W2011144390
NXGO01000005
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGTDC [NXGO]
18523
18447
-
Gly
GCC
[ENA]
¡û
>W2011144407
NXGQ01000006
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGSDC [NXGQ]
18506
18430
-
Gly
GCC
[ENA]
¡û
>W2011144412
NXGR01000003
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGTCS [NXGR]
18723
18800
+
Gly
GCC
[ENA]
¡û
>W2011144421
NXGT01000003
Alphaproteobacteria
Candidatus Hodgkinia cicadicola MAGTRE [NXGT]
29230
29154
-
Gly
GCC
[ENA]
¡û
>W1511524902
JYFR01000003
Alphaproteobacteria
Candidatus Hodgkinia cicadicola [JYFR]
29230
29154
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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