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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272364 (30 seq.)
>W1711642853
MPZQ01000009
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
19614
19691
+
Pro
GGG
[ENA]
¡û
>W1711642894
MPZR01000008
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
157806
157729
-
Pro
GGG
[ENA]
¡û
>W1711642979
MPZT01000004
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
461519
461442
-
Pro
GGG
[ENA]
¡û
>W1711643035
MPZU01000007
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
176460
176383
-
Pro
GGG
[ENA]
¡û
>W1711643081
MPZV01000005
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
19593
19670
+
Pro
GGG
[ENA]
¡û
>W1711643147
MPZX01000002
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
19622
19699
+
Pro
GGG
[ENA]
¡û
>W1711947216
NBNX01000005
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
277165
277088
-
Pro
GGG
[ENA]
¡û
>W1711947263
NBNY01000004
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
406050
405973
-
Pro
GGG
[ENA]
¡û
>W1711947311
NBNZ01000010
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
74675
74598
-
Pro
GGG
[ENA]
¡û
>W1711947349
NBOA01000006
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
19140
19217
+
Pro
GGG
[ENA]
¡û
>W1711947381
NBOB01000003
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
401122
401045
-
Pro
GGG
[ENA]
¡û
>W1711959009
NBXF01000011
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
20093
20170
+
Pro
GGG
[ENA]
¡û
>C171094350
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
2794751
2794828
+
Pro
GGG
-
¡û
>W141065875
AQRC01000015
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
18346
18423
+
Pro
GGG
[ENA]
¡û
>W141082507
AUNB01000034
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
13134
13211
+
Pro
GGG
[ENA]
¡û
>WENV170486493
CEVN01289407
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
47
124
+
Pro
GGG
[ENA]
¡û
>WENV170813497
MDSW01201100
[MDSW] marine metagenome; seawater
15060
15137
+
Pro
GGG
[ENA]
¡û
>C181116804
CP025408
Alphaproteobacteria
Paracoccus tegillarcae BM15 [CP025408]
227488
227411
-
Pro
GGG
-
¡û
>W141531717
JHEH01000015
Alphaproteobacteria
Thioclava dalianensis [JHEH]
85415
85492
+
Pro
GGG
[ENA]
¡û
>W1911575812
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
2500455
2500532
+
Pro
GGG
[ENA]
¡û
>W1810584537
QFBB01000007
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
268544
268467
-
Pro
GGG
[ENA]
¡û
>W2011185626
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
2500455
2500532
+
Pro
GGG
[ENA]
¡û
>W2011654493
SOBC01000002
Alphaproteobacteria
Thioclava sp. ES.032 [SOBC]
1663743
1663666
-
Pro
GGG
[ENA]
¡û
>W2011978578
VCQM01000010
Alphaproteobacteria
Thioclava sp. BHET1 [VCQM]
85890
85967
+
Pro
GGG
[ENA]
¡û
>W2012228350
WBJS01000008
Alphaproteobacteria
Thioclava sp. JE_KL1 [WBJS]
112670
112593
-
Pro
GGG
[ENA]
¡û
>C211094087
CP053562
Alphaproteobacteria
Thioclava electrotropha Elox9 [CP053562]
2634916
2634993
+
Pro
GGG
-
¡û
>C231569192
CP115757
Alphaproteobacteria
Paracoccus sp. SCSIO 75233 [CP115757]
1511332
1511409
+
Pro
GGG
-
¡û
>C231569267
CP115768
Alphaproteobacteria
Paracoccus sp. SCSIO 76264 [CP115768]
619534
619457
-
Pro
GGG
-
¡û
>W1710513617
FNAH01000002
Alphaproteobacteria
Paracoccus isoporae [FNAH]
214666
214589
-
Pro
GGG
[ENA]
¡û
>W1710570328
FOVB01000007
Alphaproteobacteria
Thioclava dalianensis [FOVB]
85764
85841
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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