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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272485 (46 seq.)
>W1710864359
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
616285
616209
-
Pro
TGG
[ENA]
¡û
>W1710867918
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
805795
805719
-
Pro
TGG
[ENA]
¡û
>W1710876815
LMPO01000008
Actinomycetota
Curtobacterium sp. Leaf183 [LMPO]
170643
170567
-
Pro
TGG
[ENA]
¡û
>W1710879742
LMRW01000004
Actinomycetota
Agromyces sp. Soil535 [LMRW]
137429
137505
+
Pro
TGG
[ENA]
¡û
>W131217946
ATXG01000002
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
256667
256743
+
Pro
TGG
[ENA]
¡û
>W1711460885
MJGI01000006
Actinomycetota
Curtobacterium sp. MCBA15_001 [MJGI]
75491
75567
+
Pro
TGG
[ENA]
¡û
>WENV180104174
OAPB01107036
[OAPB] marine metagenome; Sterile flask
283
357
+
Pro
TGG
[ENA]
¢þ
>WENV180359676
OBNS01012705
[OBNS] marine metagenome; Seawater
225
299
+
Pro
TGG
[ENA]
¢þ
>WENV180365076
OBOB01007585
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
177
251
+
Pro
TGG
[ENA]
¢þ
>WENV180394532
OBPS01013358
[OBPS] marine metagenome; ENVO:00002010 seawater
20
94
+
Pro
TGG
[ENA]
¢þ
>WENV180395031
OBPT01000640
[OBPT] marine metagenome; ENVO:00002010 seawater
5546
5620
+
Pro
TGG
[ENA]
¢þ
>WENV180691462
OCZS010131496
[OCZS] soil metagenome; soil
424
350
-
Pro
TGG
[ENA]
¢þ
>WENV170570755
FLOH01000020
[FLOH] marine metagenome; water
194229
194155
-
Pro
TGG
[ENA]
¢þ
>WENV170625361
FUWD013196637
[FUWD] metagenome; unknown
1981
2055
+
Pro
TGG
[ENA]
¢þ
>WENV170633601
FUWD013399284
[FUWD] metagenome; unknown
1981
2055
+
Pro
TGG
[ENA]
¢þ
>C181143725
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
705266
705342
+
Pro
TGG
-
¡û
>C181169647
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
1781290
1781216
-
Pro
TGG
-
¡û
>C191055973
CP027869
Actinomycetota
Curtobacterium sp. SGAir0471 [CP027869]
1038842
1038918
+
Pro
TGG
-
¡û
>C191183327
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
1907511
1907585
+
Pro
TGG
-
¡û
>W1810568990
QEFA01000002
Actinomycetota
Agromyces badenianii 845 [QEFA]
278913
278987
+
Pro
TGG
[ENA]
¡û
>W1810680999
QKSN01000005
Actinomycetota
Curtobacterium sp. MCSS17_007 [QKSN]
139952
139876
-
Pro
TGG
[ENA]
¡û
>W1810681319
QKST01000020
Actinomycetota
Curtobacterium sp. MCLR17_007 [QKST]
14775
14699
-
Pro
TGG
[ENA]
¡û
>W1810886017
QUNT01000001
Actinomycetota
Agromyces sp. OV568 [QUNT]
681514
681588
+
Pro
TGG
[ENA]
¡û
>SRA1026808
SRR035085.296911
454 Sequencing (SRP001806)
125
199
+
Pro
TGG
[SRA]
>SRA1027566
SRR035086.148061
454 Sequencing (SRP001807)
173
247
+
Pro
TGG
[SRA]
>SRA1035939
SRR035089.409426
454 Sequencing (SRP001810)
199
273
+
Pro
TGG
[SRA]
>SRA1052653
SRR035098.245277
454 Sequencing (SRP001819)
69
143
+
Pro
TGG
[SRA]
>SRA1053121
SRR035098.342665
454 Sequencing (SRP001819)
69
143
+
Pro
TGG
[SRA]
>SRA1053135
SRR035098.346170
454 Sequencing (SRP001819)
371
445
+
Pro
TGG
[SRA]
>SRA1053535
SRR035098.431862
454 Sequencing (SRP001819)
162
88
-
Pro
TGG
[SRA]
>SRA1053876
SRR035098.523865
454 Sequencing (SRP001819)
313
239
-
Pro
TGG
[SRA]
>SRA1053900
SRR035098.530883
454 Sequencing (SRP001819)
163
89
-
Pro
TGG
[SRA]
>C161021901
CP009755
Actinomycetota
Curtobacterium sp. MR_MD2014 [CP009755]
1051913
1051989
+
Pro
TGG
[Ensembl]
¡û
>WENV059113
AACY023354195
Marine microbial communities from Global Ocean Sampling (GOS)
633
555
-
Pro
TGG
[ENA]
>W1610589974
LDRB01000008
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
1574
1498
-
Pro
TGG
[ENA]
¡û
>W1610590024
LDRC01000011
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
65849
65773
-
Pro
TGG
[ENA]
¡û
>W1610625675
LIAY01000052
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
2247
2173
-
Pro
TGG
[ENA]
¡û
>W1610726705
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
616285
616209
-
Pro
TGG
[ENA]
¡û
>W1610730264
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
805795
805719
-
Pro
TGG
[ENA]
¡û
>W1610739161
LMPO01000008
Actinomycetota
Curtobacterium sp. Leaf183 [LMPO]
170643
170567
-
Pro
TGG
[ENA]
¡û
>W1610742088
LMRW01000004
Actinomycetota
Agromyces sp. Soil535 [LMRW]
137429
137505
+
Pro
TGG
[ENA]
¡û
>W1710534553
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
2715844
2715920
+
Pro
TGG
[ENA]
¡û
>W1710594666
FSRJ01000001
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
693845
693921
+
Pro
TGG
[ENA]
¡û
>W1710709254
LDRB01000008
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
1574
1498
-
Pro
TGG
[ENA]
¡û
>W1710709304
LDRC01000011
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
65849
65773
-
Pro
TGG
[ENA]
¡û
>W1710756802
LIAY01000052
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
2247
2173
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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