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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272536 (52 seq.)
>W1711175708
LWEY01000612
Gammaproteobacteria
Oleiphilus sp. HI0043 [LWEY]
733
658
-
Thr
GGT
[ENA]
¡û
>W1711175887
LWFB01000774
Gammaproteobacteria
Oleiphilus sp. HI0050 [LWFB]
75
1
-
Thr
GGT
[ENA]
¡û
>W1711175926
LWFB01001968
Gammaproteobacteria
Oleiphilus sp. HI0050 [LWFB]
679
604
-
Thr
GGT
[ENA]
¡û
>W1711176157
LWFE01001297
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
5972
6047
+
Thr
GGT
[ENA]
¡û
>W1711176355
LWFI01000157
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
24054
24129
+
Thr
GGT
[ENA]
¡û
>W1711176359
LWFI01000304
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
344
269
-
Thr
GGT
[ENA]
¡û
>W1711176460
LWFJ01001921
Gammaproteobacteria
Oleiphilus sp. HI0068 [LWFJ]
315
390
+
Thr
GGT
[ENA]
¡û
>W1711176512
LWFK01001862
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
595
520
-
Thr
GGT
[ENA]
¡û
>W1711176607
LWFM01000421
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
730
655
-
Thr
GGT
[ENA]
¡û
>W1711176615
LWFM01000913
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
120
195
+
Thr
GGT
[ENA]
¡û
>W1711176706
LWFN01001986
Gammaproteobacteria
Oleiphilus sp. HI0073 [LWFN]
16397
16472
+
Thr
GGT
[ENA]
¡û
>W1711176964
LWFS01000215
Gammaproteobacteria
Oleiphilus sp. HI0078 [LWFS]
1335
1410
+
Thr
GGT
[ENA]
¡û
>W1711177080
LWFU01000755
Gammaproteobacteria
Oleiphilus sp. HI0080 [LWFU]
1067
992
-
Thr
GGT
[ENA]
¡û
>W1711177113
LWFV01000745
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
813
738
-
Thr
GGT
[ENA]
¡û
>W1711177123
LWFV01001286
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
86
11
-
Thr
GGT
[ENA]
¡û
>W1711177280
LWFY01000153
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
3624
3699
+
Thr
GGT
[ENA]
¡û
>W1711177353
LWFZ01000701
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
616
541
-
Thr
GGT
[ENA]
¡û
>W1711177363
LWFZ01000849
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
246
321
+
Thr
GGT
[ENA]
¡û
>W1711177407
LWGA01000694
Gammaproteobacteria
Oleiphilus sp. HI0117 [LWGA]
776
701
-
Thr
GGT
[ENA]
¡û
>W1711177470
LWGB01001601
Gammaproteobacteria
Oleiphilus sp. HI0118 [LWGB]
329
254
-
Thr
GGT
[ENA]
¡û
>W1711177506
LWGB01002272
Gammaproteobacteria
Oleiphilus sp. HI0118 [LWGB]
388
313
-
Thr
GGT
[ENA]
¡û
>W1711177627
LWGD01000701
Gammaproteobacteria
Oleiphilus sp. HI0122 [LWGD]
368
293
-
Thr
GGT
[ENA]
¡û
>W1711177645
LWGD01001446
Gammaproteobacteria
Oleiphilus sp. HI0122 [LWGD]
1204
1129
-
Thr
GGT
[ENA]
¡û
>W1711177680
LWGE01000027
Gammaproteobacteria
Oleiphilus sp. HI0123 [LWGE]
106
31
-
Thr
GGT
[ENA]
¡û
>W1711177811
LWGG01000937
Gammaproteobacteria
Oleiphilus sp. HI0128 [LWGG]
832
907
+
Thr
GGT
[ENA]
¡û
>W1711177943
LWGJ01000336
Gammaproteobacteria
Oleiphilus sp. HI0132 [LWGJ]
571
496
-
Thr
GGT
[ENA]
¡û
>WENV180370731
OBOH01190180
[OBOH] marine metagenome; ENVO:00002010
21
96
+
Thr
GGT
[ENA]
¡û
>WENV182575538
OJFV01000042
[OJFV] seawater metagenome; Sea water
106228
106153
-
Thr
GGT
[ENA]
¡û
>WENV170298387
CESF01107891
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
70
145
+
Thr
GGT
[ENA]
¡û
>C231365283
CP096016
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12582 [CP096016]
4536550
4536625
+
Thr
GGT
-
¡û
>C231365328
CP096017
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12638 [CP096017]
3115875
3115950
+
Thr
GGT
-
¡û
>C231365380
CP096018
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12817 [CP096018]
3116191
3116266
+
Thr
GGT
-
¡û
>C231426254
CP100390
Gammaproteobacteria
Alkalimarinus sp. A2M4 [CP100390]
3900433
3900358
-
Thr
GGT
-
¡û
>C231437846
CP101527
Gammaproteobacteria
Alkalimarinus sediminis FA028 [CP101527]
426174
426249
+
Thr
GGT
-
¡û
>W1610984021
LWEY01000612
Gammaproteobacteria
Oleiphilus sp. HI0043 [LWEY]
733
658
-
Thr
GGT
[ENA]
¡û
>W1610984200
LWFB01000774
Gammaproteobacteria
Oleiphilus sp. HI0050 [LWFB]
75
1
-
Thr
GGT
[ENA]
¡û
>W1610984239
LWFB01001968
Gammaproteobacteria
Oleiphilus sp. HI0050 [LWFB]
679
604
-
Thr
GGT
[ENA]
¡û
>W1610984470
LWFE01001297
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
5972
6047
+
Thr
GGT
[ENA]
¡û
>W1610984773
LWFJ01001921
Gammaproteobacteria
Oleiphilus sp. HI0068 [LWFJ]
315
390
+
Thr
GGT
[ENA]
¡û
>W1610984825
LWFK01001862
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
595
520
-
Thr
GGT
[ENA]
¡û
>W1610984920
LWFM01000421
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
730
655
-
Thr
GGT
[ENA]
¡û
>W1610984928
LWFM01000913
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
120
195
+
Thr
GGT
[ENA]
¡û
>W1610985277
LWFS01000215
Gammaproteobacteria
Oleiphilus sp. HI0078 [LWFS]
1335
1410
+
Thr
GGT
[ENA]
¡û
>W1610985426
LWFV01000745
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
813
738
-
Thr
GGT
[ENA]
¡û
>W1610985436
LWFV01001286
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
86
11
-
Thr
GGT
[ENA]
¡û
>W1610985593
LWFY01000153
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
3624
3699
+
Thr
GGT
[ENA]
¡û
>W1610985666
LWFZ01000701
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
616
541
-
Thr
GGT
[ENA]
¡û
>W1610985676
LWFZ01000849
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
246
321
+
Thr
GGT
[ENA]
¡û
>W1610985720
LWGA01000694
Gammaproteobacteria
Oleiphilus sp. HI0117 [LWGA]
776
701
-
Thr
GGT
[ENA]
¡û
>W1610985993
LWGE01000027
Gammaproteobacteria
Oleiphilus sp. HI0123 [LWGE]
106
31
-
Thr
GGT
[ENA]
¡û
>W1610986124
LWGG01000937
Gammaproteobacteria
Oleiphilus sp. HI0128 [LWGG]
832
907
+
Thr
GGT
[ENA]
¡û
>W1610986256
LWGJ01000336
Gammaproteobacteria
Oleiphilus sp. HI0132 [LWGJ]
571
496
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK