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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272539 (118 seq.)
>W131170001
ARFF01000006
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
536110
536185
+
Ile
GAT
[ENA]
¡û
>W131170014
ARFF01000012
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
1952
2027
+
Ile
GAT
[ENA]
¡û
>W131170018
ARFF01000013
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
3639
3564
-
Ile
GAT
[ENA]
¡û
>W131170033
ARFF01000026
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
10813
10738
-
Ile
GAT
[ENA]
¡û
>W1712050003
NFUV01000002
Bacteroidota
Chitinophagaceae bacterium IBVUCB2 [NFUV]
591722
591797
+
Ile
GAT
[ENA]
¡û
>WENV180015492
FQKF010748856
[FQKF] soil metagenome; Soil
236
311
+
Ile
GAT
[ENA]
¡û
>WENV180693417
OCZS011218093
[OCZS] soil metagenome; soil
1
78
+
Ile
GAT
[ENA]
¡û
>WENV181163741
OEIQ01229961
[OEIQ] soil metagenome; soil
175
100
-
Ile
GAT
[ENA]
¡û
>WENV181164540
OEIR01220434
[OEIR] soil metagenome; soil
81
156
+
Ile
GAT
[ENA]
¡û
>WENV181168369
OEIU01308753
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
138
213
+
Ile
GAT
[ENA]
¡û
>WENV181188922
OEOE01481468
[OEOE] activated sludge metagenome; Activated Sludge
85
10
-
Ile
GAT
[ENA]
¡û
>WENV181222499
OFDB01000824
[OFDB] metagenome; soil
774
851
+
Ile
GAT
[ENA]
¡û
>WENV181308307
OFIS01003220
[OFIS] sludge metagenome; sludge
463
540
+
Ile
GAT
[ENA]
¡û
>WENV181312155
OFJB01050038
[OFJB] sludge metagenome; sludge
667
590
-
Ile
GAT
[ENA]
¡û
>WENV181401759
OFTX01005211
[OFTX] sludge metagenome; sludge
2356
2279
-
Ile
GAT
[ENA]
¡û
>WENV181402564
OFTY01004365
[OFTY] sludge metagenome; sludge
2334
2257
-
Ile
GAT
[ENA]
¡û
>WENV181402639
OFTY01011329
[OFTY] sludge metagenome; sludge
2
77
+
Ile
GAT
[ENA]
¡û
>WENV181845566
OGVX01004170
[OGVX] freshwater metagenome; freshwater
1810
1885
+
Ile
GAT
[ENA]
¡û
>WENV182866266
OKRQ01043721
[OKRQ] freshwater metagenome; freshwater
314
239
-
Ile
GAT
[ENA]
¡û
>WENV183703119
PDVJ01003289
[PDVJ] alkali sediment metagenome; glacial lake sediment
1488
1563
+
Ile
GAT
[ENA]
¡û
>WENV183729051
PJTQ01003292
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
3052
2977
-
Ile
GAT
[ENA]
¡û
>WENV183729367
PJTQ01028514
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
556
479
-
Ile
GAT
[ENA]
¡û
>WENV183730240
PJTR01006688
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
191
268
+
Ile
GAT
[ENA]
¡û
>WENV183734563
PJTZ01018079
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
608
685
+
Ile
GAT
[ENA]
¡û
>WENV183737593
PJUD01017562
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
176
253
+
Ile
GAT
[ENA]
¡û
>WENV183738018
PJUD01067395
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
246
171
-
Ile
GAT
[ENA]
¡û
>WENV183740822
PJUF01012004
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1126
1051
-
Ile
GAT
[ENA]
¡û
>WENV183740858
PJUF01013616
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1005
928
-
Ile
GAT
[ENA]
¡û
>WENV170555522
CXWL01000903
[CXWL] groundwater metagenome; biofilm material
505956
505879
-
Ile
GAT
[ENA]
¡û
>WENV170565929
FKKE01002337
[FKKE] freshwater metagenome; freshwater
2343
2268
-
Ile
GAT
[ENA]
¡û
>WENV170713894
LNFM01045840
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3452
3377
-
Ile
GAT
[ENA]
¡û
>WENV170954705
MJUI01028991
[MJUI] soil metagenome; viral particles from soil sample MG3
217
294
+
Ile
GAT
[ENA]
¡û
>WENV170980988
MWVT01014491
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
146
69
-
Ile
GAT
[ENA]
¡û
>WENV170981383
MWVT01078421
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
60
137
+
Ile
GAT
[ENA]
¡û
>WENV170981703
MWVT01176922
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
86
163
+
Ile
GAT
[ENA]
¡û
>WENV170982319
MWVU01064471
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
506
431
-
Ile
GAT
[ENA]
¡û
>WENV170983483
MWVV01041094
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
358
281
-
Ile
GAT
[ENA]
¡û
>WENV170983766
MWVV01086405
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
652
575
-
Ile
GAT
[ENA]
¡û
>WENV170984078
MWVV01162120
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
241
318
+
Ile
GAT
[ENA]
¡û
>WENV170984684
MWVV01392227
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
263
340
+
Ile
GAT
[ENA]
¡û
>WENV170984920
MWVW01003492
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1991
1914
-
Ile
GAT
[ENA]
¡û
>WENV170984951
MWVW01004997
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
234
309
+
Ile
GAT
[ENA]
¡û
>WENV170985023
MWVW01011747
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
640
563
-
Ile
GAT
[ENA]
¡û
>WENV170985126
MWVW01026380
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
321
398
+
Ile
GAT
[ENA]
¡û
>WENV170985788
MWVX01002745
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1362
1439
+
Ile
GAT
[ENA]
¡û
>WENV170986101
MWVX01016096
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
508
433
-
Ile
GAT
[ENA]
¡û
>WENV170986427
MWVX01039300
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
867
792
-
Ile
GAT
[ENA]
¡û
>WENV170986478
MWVX01043377
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
242
317
+
Ile
GAT
[ENA]
¡û
>WENV170986855
MWVX01087792
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
598
521
-
Ile
GAT
[ENA]
¡û
>WENV170986911
MWVX01095743
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
561
484
-
Ile
GAT
[ENA]
¡û
>WENV170987253
MWVX01155302
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
652
575
-
Ile
GAT
[ENA]
¡û
>WENV170987682
MWVX01245120
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
285
208
-
Ile
GAT
[ENA]
¡û
>WENV170987910
MWVX01311557
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
204
279
+
Ile
GAT
[ENA]
¡û
>WENV170988739
MWVY01001607
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
109
184
+
Ile
GAT
[ENA]
¡û
>WENV170989181
MWVZ01001438
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
191
114
-
Ile
GAT
[ENA]
¡û
>WENV170989313
MWVZ01012291
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
503
580
+
Ile
GAT
[ENA]
¡û
>WENV170990318
MWWA01000869
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
7534
7457
-
Ile
GAT
[ENA]
¡û
>WENV170990402
MWWA01004453
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
787
710
-
Ile
GAT
[ENA]
¡û
>WENV170990646
MWWA01025370
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1135
1058
-
Ile
GAT
[ENA]
¡û
>WENV170991010
MWWA01091448
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
61
138
+
Ile
GAT
[ENA]
¡û
>WENV170991059
MWWA01102604
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
503
580
+
Ile
GAT
[ENA]
¡û
>WENV170991107
MWWA01112454
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
48
125
+
Ile
GAT
[ENA]
¡û
>WENV170992504
MWWB01036453
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
757
834
+
Ile
GAT
[ENA]
¡û
>WENV170993126
MWWB01190920
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
46
123
+
Ile
GAT
[ENA]
¡û
>WENV170993259
MWWB01238547
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
398
321
-
Ile
GAT
[ENA]
¡û
>WENV170993333
MWWB01267813
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
192
115
-
Ile
GAT
[ENA]
¡û
>WENV170994510
MWWE01002227
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
2254
2331
+
Ile
GAT
[ENA]
¡û
>WENV170995063
MWWE01139475
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
215
140
-
Ile
GAT
[ENA]
¡û
>WENV170995441
MWWF01007811
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1621
1546
-
Ile
GAT
[ENA]
¡û
>WENV170996481
MWWF01289568
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
342
417
+
Ile
GAT
[ENA]
¡û
>WENV170996716
MWWF01385288
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
157
234
+
Ile
GAT
[ENA]
¡û
>WENV170997044
MWWG01022093
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
684
759
+
Ile
GAT
[ENA]
¡û
>WENV170997178
MWWG01042820
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
10
87
+
Ile
GAT
[ENA]
¡û
>WENV170997615
MWWG01212303
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
276
199
-
Ile
GAT
[ENA]
¡û
>WENV170998143
MWWI01023041
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
549
472
-
Ile
GAT
[ENA]
¡û
>WENV170998769
MWWJ01105162
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
109
34
-
Ile
GAT
[ENA]
¡û
>WENV170999413
MWWK01051663
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
186
109
-
Ile
GAT
[ENA]
¡û
>W1810090170
PGFG01000001
Bacteroidota
Thermoflavifilum aggregans DSM 27268 [PGFG]
2457242
2457167
-
Ile
GAT
[ENA]
¡û
>W1810533344
QCZJ01000017
Bacteroidota
Terrimonas sp. NS-102 [QCZJ]
107663
107740
+
Ile
GAT
[ENA]
¡û
>W1810692648
QLKR01000020
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
3672
3595
-
Ile
GAT
[ENA]
¡û
>C151016379
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
4617148
4617225
+
Ile
GAT
[Ensembl]
¡û
>C151016388
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
2227535
2227458
-
Ile
GAT
[Ensembl]
¡û
>W2011402483
RCSU01000031
Bacteroidota
Pseudoflavitalea rhizosphaerae KACC 18655 [RCSU]
1438
1515
+
Ile
GAT
[ENA]
¡û
>W2011404259
RCWL01000017
Bacteroidota
Chitinophagaceae bacterium HBUM179779 [RCWL]
3323
3248
-
Ile
GAT
[ENA]
¡û
>W2011578096
SGXA01000008
Bacteroidota
Pseudobacter ginsenosidimutans DSM 18116 [SGXA]
1805
1882
+
Ile
GAT
[ENA]
¡û
>W2012002650
VEHN01000150
Bacteroidota
Filimonas lacunae DE0057 [VEHN]
1848
1925
+
Ile
GAT
[ENA]
¡û
>W2012103376
VOHQ01000012
Bacteroidota
Terrimonas sp. YJ03 [VOHQ]
30036
29959
-
Ile
GAT
[ENA]
¡û
>W2012208580
VYQF01000001
Bacteroidota
Chitinophagaceae bacterium BR5-29 [VYQF]
1185524
1185449
-
Ile
GAT
[ENA]
¡û
>W2110597210
JAHEAH010000002
Bacteroidota
Flavihumibacter sp. IMCC34838 [JAHEAH]
170432
170509
+
Ile
GAT
[ENA]
¡û
>W2110597270
JAHEAI010000003
Bacteroidota
Flavihumibacter sp. IMCC34837 [JAHEAI]
1021
1096
+
Ile
GAT
[ENA]
¡û
>W2110641874
JAHSPG010000021
Bacteroidota
Parasegetibacter sp. MAH-26 [JAHSPG]
1771
1848
+
Ile
GAT
[ENA]
¡û
>W2110692699
JAIQDI010000003
Bacteroidota
Niabella sp. 3A5MI-3 [JAIQDI]
1945
2020
+
Ile
GAT
[ENA]
¡û
>W2110694325
JAIQXE010000001
Bacteroidota
Flavihumibacter profundi KCTC 62290 [JAIQXE]
2136082
2136007
-
Ile
GAT
[ENA]
¡û
>C211367316
CP079215
Bacteroidota
Niabella sp. I65 [CP079215]
3346344
3346419
+
Ile
GAT
-
¡û
>C211367324
CP079215
Bacteroidota
Niabella sp. I65 [CP079215]
5679124
5679049
-
Ile
GAT
-
¡û
>C211401688
CP083388
Bacteroidota
Ferruginibacter sp. KIS38-8 [CP083388]
767406
767481
+
Ile
GAT
-
¡û
>C231314616
CP092333
Bacteroidota
Flavihumibacter fluminis (ex Park et al. 2022) IMCC34837 [CP092333]
208842
208917
+
Ile
GAT
-
¡û
>C231314652
CP092334
Bacteroidota
Flavihumibacter rivuli IMCC34838 [CP092334]
87793
87870
+
Ile
GAT
-
¡û
>C231619817
CP119311
Bacteroidota
Pseudobacter sp. [CP119311]
2638318
2638393
+
Ile
GAT
-
¡û
>C231619854
CP119311
Bacteroidota
Pseudobacter sp. [CP119311]
3760
3685
-
Ile
GAT
-
¡û
>C241065887
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
3522646
3522723
+
Ile
GAT
-
¡û
>C241065914
CP042431
Bacteroidota
Pseudobacter ginsenosidimutans Gsoil 221 [CP042431]
500030
499953
-
Ile
GAT
-
¡û
>C241352456
CP139960
Bacteroidota
Niabella yanshanensis HAMBI_3031 [CP139960]
4530616
4530693
+
Ile
GAT
-
¡û
>C241352480
CP139960
Bacteroidota
Niabella yanshanensis HAMBI_3031 [CP139960]
1094401
1094324
-
Ile
GAT
-
¡û
>W1511300725
JPHF01000035
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
1136
1213
+
Ile
GAT
[ENA]
¡û
>W1511387789
JSVC01000053
Bacteroidota
Flavihumibacter solisilvae 3-3 [JSVC]
3482
3407
-
Ile
GAT
[ENA]
¡û
>WENV048897
AACY022758132
Marine microbial communities from Global Ocean Sampling (GOS)
106
185
+
Ile
GAT
[ENA]
>C161090527
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
993076
993151
+
Ile
GAT
[Ensembl]
¡û
>C161090530
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
1425234
1425309
+
Ile
GAT
[Ensembl]
¡û
>W121017741
AGSA01000025
Bacteroidota
Niabella soli DSM 19437 [AGSA]
265077
265000
-
Ile
GAT
[ENA]
¡û
>W1610617820
LGYU01000045
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
2386
2463
+
Ile
GAT
[ENA]
¡û
>W1610935518
LUKG01000026
Bacteroidota
Flavihumibacter sp. CACIAM 22H1 [LUKG]
1113
1036
-
Ile
GAT
[ENA]
¡û
>ENV003814
DQ010158
Environmental sample from ENV division of INSDC
988
1067
+
Ile
GAT
[ENA]
>W1710512691
FMZO01000042
Bacteroidota
Niabella drilacis [FMZO]
3691
3614
-
Ile
GAT
[ENA]
¡û
>W1710579435
FPCJ01000001
Bacteroidota
Thermoflavifilum thermophilum thermophila [FPCJ]
1917512
1917587
+
Ile
GAT
[ENA]
¡û
>W1710583441
FQUU01000002
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
417793
417716
-
Ile
GAT
[ENA]
¡û
>W1710583452
FQUU01000007
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
209515
209438
-
Ile
GAT
[ENA]
¡û
>W1710743873
LGYU01000045
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
2386
2463
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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