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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272557 (169 seq.)
>W1710858983
LMBR01000048
Chlorobiota
Chlorobium limicola [LMBR]
3781
3855
+
Pro
GGG
[ENA]
¡û
>W1711167308
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
34182
34108
-
Pro
GGG
[ENA]
¡û
>C171049479
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
300529
300455
-
Pro
GGG
-
¡û
>C171113993
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
305367
305441
+
Pro
GGG
-
¡û
>C006577
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
337928
338001
+
Pro
GGG
[Ensembl]
¡û
>C016755
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
2158139
2158066
-
Pro
GGG
[Ensembl]
¡û
>C018260
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1762517
1762444
-
Pro
GGG
[Ensembl]
¡û
>w007186
AAIK01000006
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
90518
90440
-
Pro
GGG
[ENA]
¡û
>w007167
AAIJ01000008
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
44702
44780
+
Pro
GGG
[ENA]
¡û
>w006964
AAIC01000032
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
25255
25333
+
Pro
GGG
[ENA]
¡û
>w006107
AAHJ01000007
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
89035
88957
-
Pro
GGG
[ENA]
¡û
>C08003492
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
275772
275846
+
Pro
GGG
[Ensembl]
¡û
>C08003633
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
356741
356815
+
Pro
GGG
[Ensembl]
¡û
>C08003609
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
2049008
2048934
-
Pro
GGG
[Ensembl]
¡û
>C08007713
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
2730274
2730200
-
Pro
GGG
[Ensembl]
¡û
>C08007152
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
344459
344533
+
Pro
GGG
[Ensembl]
¡û
>WENV183513222
OMKS01003411
[OMKS] sediment metagenome; hot spring sediment
9123
9049
-
Pro
GGG
[ENA]
¢þ
>WENV183812119
PYLN01000081
[PYLN] freshwater metagenome; meromictic lake
6691
6617
-
Pro
GGG
[ENA]
¢þ
>WENV170606606
FUWD010692023
[FUWD] metagenome; unknown
308
234
-
Pro
GGG
[ENA]
¢þ
>WENV170613595
FUWD012814624
[FUWD] metagenome; unknown
33039
33113
+
Pro
GGG
[ENA]
¢þ
>WENV170613996
FUWD012823313
[FUWD] metagenome; unknown
8465
8539
+
Pro
GGG
[ENA]
¢þ
>WENV170624375
FUWD013180802
[FUWD] metagenome; unknown
10147
10221
+
Pro
GGG
[ENA]
¢þ
>WENV170632661
FUWD013385895
[FUWD] metagenome; unknown
10147
10221
+
Pro
GGG
[ENA]
¢þ
>C181068769
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
349836
349910
+
Pro
GGG
-
¡û
>W09102665
AAIB01000023
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
5487
5413
-
Pro
GGG
[ENA]
¡û
>W09103373
AAJD01000016
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
20920
20994
+
Pro
GGG
[ENA]
¡û
>W1810062181
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2606765
2606691
-
Pro
GGG
[ENA]
¡û
>SRA1017835
SRR035082.204388
454 Sequencing (SRP001803)
178
252
+
Pro
GGG
[SRA]
>SRA1019970
SRR035083.32652
454 Sequencing (SRP001804)
457
531
+
Pro
GGG
[SRA]
>SRA1020062
SRR035083.52084
454 Sequencing (SRP001804)
31
105
+
Pro
GGG
[SRA]
>SRA1020074
SRR035083.53315
454 Sequencing (SRP001804)
32
106
+
Pro
GGG
[SRA]
>SRA1020085
SRR035083.55791
454 Sequencing (SRP001804)
320
394
+
Pro
GGG
[SRA]
>SRA1020193
SRR035083.71726
454 Sequencing (SRP001804)
284
358
+
Pro
GGG
[SRA]
>SRA1020342
SRR035083.99337
454 Sequencing (SRP001804)
164
90
-
Pro
GGG
[SRA]
>SRA1020368
SRR035083.102770
454 Sequencing (SRP001804)
89
163
+
Pro
GGG
[SRA]
>SRA1020383
SRR035083.105395
454 Sequencing (SRP001804)
443
369
-
Pro
GGG
[SRA]
>SRA1020422
SRR035083.112371
454 Sequencing (SRP001804)
175
101
-
Pro
GGG
[SRA]
>SRA1020450
SRR035083.117402
454 Sequencing (SRP001804)
266
340
+
Pro
GGG
[SRA]
>SRA1020513
SRR035083.128446
454 Sequencing (SRP001804)
112
38
-
Pro
GGG
[SRA]
>SRA1020521
SRR035083.129903
454 Sequencing (SRP001804)
156
82
-
Pro
GGG
[SRA]
>SRA1020534
SRR035083.130854
454 Sequencing (SRP001804)
187
113
-
Pro
GGG
[SRA]
>SRA1020611
SRR035083.140858
454 Sequencing (SRP001804)
125
51
-
Pro
GGG
[SRA]
>SRA1020635
SRR035083.144966
454 Sequencing (SRP001804)
300
374
+
Pro
GGG
[SRA]
>SRA1020744
SRR035083.158404
454 Sequencing (SRP001804)
168
94
-
Pro
GGG
[SRA]
>SRA1020750
SRR035083.159262
454 Sequencing (SRP001804)
242
168
-
Pro
GGG
[SRA]
>SRA1020775
SRR035083.162514
454 Sequencing (SRP001804)
45
119
+
Pro
GGG
[SRA]
>SRA1020875
SRR035083.176791
454 Sequencing (SRP001804)
122
48
-
Pro
GGG
[SRA]
>SRA1020928
SRR035083.186757
454 Sequencing (SRP001804)
152
226
+
Pro
GGG
[SRA]
>SRA1021077
SRR035083.205853
454 Sequencing (SRP001804)
299
225
-
Pro
GGG
[SRA]
>SRA1021171
SRR035083.219519
454 Sequencing (SRP001804)
303
377
+
Pro
GGG
[SRA]
>SRA1021262
SRR035083.232525
454 Sequencing (SRP001804)
333
407
+
Pro
GGG
[SRA]
>SRA1021263
SRR035083.232719
454 Sequencing (SRP001804)
187
113
-
Pro
GGG
[SRA]
>SRA1021363
SRR035083.250253
454 Sequencing (SRP001804)
321
247
-
Pro
GGG
[SRA]
>SRA1021425
SRR035083.256720
454 Sequencing (SRP001804)
89
15
-
Pro
GGG
[SRA]
>SRA1021526
SRR035083.269275
454 Sequencing (SRP001804)
278
204
-
Pro
GGG
[SRA]
>SRA1021600
SRR035083.279195
454 Sequencing (SRP001804)
324
250
-
Pro
GGG
[SRA]
>SRA1021606
SRR035083.281028
454 Sequencing (SRP001804)
156
82
-
Pro
GGG
[SRA]
>SRA1021688
SRR035083.292753
454 Sequencing (SRP001804)
49
123
+
Pro
GGG
[SRA]
>SRA1021752
SRR035083.301999
454 Sequencing (SRP001804)
407
481
+
Pro
GGG
[SRA]
>SRA1021913
SRR035083.327186
454 Sequencing (SRP001804)
167
93
-
Pro
GGG
[SRA]
>SRA1022031
SRR035083.341948
454 Sequencing (SRP001804)
385
459
+
Pro
GGG
[SRA]
>SRA1022066
SRR035083.348136
454 Sequencing (SRP001804)
48
122
+
Pro
GGG
[SRA]
>SRA1022275
SRR035083.380280
454 Sequencing (SRP001804)
373
447
+
Pro
GGG
[SRA]
>SRA1022278
SRR035083.380591
454 Sequencing (SRP001804)
119
193
+
Pro
GGG
[SRA]
>SRA1022309
SRR035083.386512
454 Sequencing (SRP001804)
241
167
-
Pro
GGG
[SRA]
>SRA1022381
SRR035083.398515
454 Sequencing (SRP001804)
333
407
+
Pro
GGG
[SRA]
>SRA1022510
SRR035083.416410
454 Sequencing (SRP001804)
270
344
+
Pro
GGG
[SRA]
>SRA1022517
SRR035083.419181
454 Sequencing (SRP001804)
322
248
-
Pro
GGG
[SRA]
>SRA1022579
SRR035083.428410
454 Sequencing (SRP001804)
212
138
-
Pro
GGG
[SRA]
>SRA1022658
SRR035083.438179
454 Sequencing (SRP001804)
181
107
-
Pro
GGG
[SRA]
>SRA1022679
SRR035083.441533
454 Sequencing (SRP001804)
193
119
-
Pro
GGG
[SRA]
>SRA1022710
SRR035083.445543
454 Sequencing (SRP001804)
200
274
+
Pro
GGG
[SRA]
>SRA1022817
SRR035083.466600
454 Sequencing (SRP001804)
302
228
-
Pro
GGG
[SRA]
>SRA1022828
SRR035083.468429
454 Sequencing (SRP001804)
100
26
-
Pro
GGG
[SRA]
>SRA1022923
SRR035083.487347
454 Sequencing (SRP001804)
262
188
-
Pro
GGG
[SRA]
>SRA1031671
SRR035087.468146
454 Sequencing (SRP001808)
214
140
-
Pro
GGG
[SRA]
>SRA1032389
SRR035087.620122
454 Sequencing (SRP001808)
23
97
+
Pro
GGG
[SRA]
>SRA1032787
SRR035088.103157
454 Sequencing (SRP001809)
257
331
+
Pro
GGG
[SRA]
>SRA1032989
SRR035088.145383
454 Sequencing (SRP001809)
26
100
+
Pro
GGG
[SRA]
>SRA1033469
SRR035088.266911
454 Sequencing (SRP001809)
99
25
-
Pro
GGG
[SRA]
>SRA1033735
SRR035088.340195
454 Sequencing (SRP001809)
189
263
+
Pro
GGG
[SRA]
>SRA1033774
SRR035088.350936
454 Sequencing (SRP001809)
236
310
+
Pro
GGG
[SRA]
>SRA1033996
SRR035088.438391
454 Sequencing (SRP001809)
167
93
-
Pro
GGG
[SRA]
>SRA1034439
SRR035089.96474
454 Sequencing (SRP001810)
201
275
+
Pro
GGG
[SRA]
>SRA1034936
SRR035089.202694
454 Sequencing (SRP001810)
466
540
+
Pro
GGG
[SRA]
>SRA1036134
SRR035089.452115
454 Sequencing (SRP001810)
20
94
+
Pro
GGG
[SRA]
>SRA1037045
SRR035090.63815
454 Sequencing (SRP001811)
253
179
-
Pro
GGG
[SRA]
>SRA1037103
SRR035090.73823
454 Sequencing (SRP001811)
110
36
-
Pro
GGG
[SRA]
>SRA1037113
SRR035090.75595
454 Sequencing (SRP001811)
115
189
+
Pro
GGG
[SRA]
>SRA1037138
SRR035090.80271
454 Sequencing (SRP001811)
149
75
-
Pro
GGG
[SRA]
>SRA1037148
SRR035090.82028
454 Sequencing (SRP001811)
110
36
-
Pro
GGG
[SRA]
>SRA1037160
SRR035090.86012
454 Sequencing (SRP001811)
287
361
+
Pro
GGG
[SRA]
>SRA1037211
SRR035090.93543
454 Sequencing (SRP001811)
372
446
+
Pro
GGG
[SRA]
>SRA1037230
SRR035090.97330
454 Sequencing (SRP001811)
289
363
+
Pro
GGG
[SRA]
>SRA1037232
SRR035090.99651
454 Sequencing (SRP001811)
165
239
+
Pro
GGG
[SRA]
>SRA1037325
SRR035090.115052
454 Sequencing (SRP001811)
291
217
-
Pro
GGG
[SRA]
>SRA1037339
SRR035090.118935
454 Sequencing (SRP001811)
74
148
+
Pro
GGG
[SRA]
>SRA1037341
SRR035090.119057
454 Sequencing (SRP001811)
145
71
-
Pro
GGG
[SRA]
>SRA1037344
SRR035090.119814
454 Sequencing (SRP001811)
109
35
-
Pro
GGG
[SRA]
>SRA1037448
SRR035090.136565
454 Sequencing (SRP001811)
16
90
+
Pro
GGG
[SRA]
>SRA1037474
SRR035090.139672
454 Sequencing (SRP001811)
197
123
-
Pro
GGG
[SRA]
>SRA1037489
SRR035090.141727
454 Sequencing (SRP001811)
112
38
-
Pro
GGG
[SRA]
>SRA1037519
SRR035090.145865
454 Sequencing (SRP001811)
150
76
-
Pro
GGG
[SRA]
>SRA1037571
SRR035090.156909
454 Sequencing (SRP001811)
144
70
-
Pro
GGG
[SRA]
>SRA1037589
SRR035090.159625
454 Sequencing (SRP001811)
163
237
+
Pro
GGG
[SRA]
>SRA1037804
SRR035090.199259
454 Sequencing (SRP001811)
218
292
+
Pro
GGG
[SRA]
>SRA1037817
SRR035090.201172
454 Sequencing (SRP001811)
235
309
+
Pro
GGG
[SRA]
>SRA1037832
SRR035090.202480
454 Sequencing (SRP001811)
374
448
+
Pro
GGG
[SRA]
>SRA1037845
SRR035090.203994
454 Sequencing (SRP001811)
236
162
-
Pro
GGG
[SRA]
>SRA1037947
SRR035090.224465
454 Sequencing (SRP001811)
275
201
-
Pro
GGG
[SRA]
>SRA1037980
SRR035090.229053
454 Sequencing (SRP001811)
198
272
+
Pro
GGG
[SRA]
>SRA1038044
SRR035090.238626
454 Sequencing (SRP001811)
215
289
+
Pro
GGG
[SRA]
>SRA1038083
SRR035090.242727
454 Sequencing (SRP001811)
145
71
-
Pro
GGG
[SRA]
>SRA1038112
SRR035090.247647
454 Sequencing (SRP001811)
159
233
+
Pro
GGG
[SRA]
>SRA1038113
SRR035090.247717
454 Sequencing (SRP001811)
289
363
+
Pro
GGG
[SRA]
>SRA1038167
SRR035090.257436
454 Sequencing (SRP001811)
165
239
+
Pro
GGG
[SRA]
>SRA1038295
SRR035090.281781
454 Sequencing (SRP001811)
323
249
-
Pro
GGG
[SRA]
>SRA1038415
SRR035090.300088
454 Sequencing (SRP001811)
157
83
-
Pro
GGG
[SRA]
>SRA1038571
SRR035090.329137
454 Sequencing (SRP001811)
389
463
+
Pro
GGG
[SRA]
>SRA1038619
SRR035090.337882
454 Sequencing (SRP001811)
110
36
-
Pro
GGG
[SRA]
>SRA1038621
SRR035090.338542
454 Sequencing (SRP001811)
112
38
-
Pro
GGG
[SRA]
>SRA1038626
SRR035090.338883
454 Sequencing (SRP001811)
249
323
+
Pro
GGG
[SRA]
>SRA1038633
SRR035090.339942
454 Sequencing (SRP001811)
254
328
+
Pro
GGG
[SRA]
>SRA1038638
SRR035090.341504
454 Sequencing (SRP001811)
259
333
+
Pro
GGG
[SRA]
>SRA1038714
SRR035090.354068
454 Sequencing (SRP001811)
76
2
-
Pro
GGG
[SRA]
>SRA1038888
SRR035090.388889
454 Sequencing (SRP001811)
227
301
+
Pro
GGG
[SRA]
>SRA1038948
SRR035090.398328
454 Sequencing (SRP001811)
52
126
+
Pro
GGG
[SRA]
>SRA1038952
SRR035090.399542
454 Sequencing (SRP001811)
257
183
-
Pro
GGG
[SRA]
>SRA1038983
SRR035090.403135
454 Sequencing (SRP001811)
142
68
-
Pro
GGG
[SRA]
>SRA1039001
SRR035090.406423
454 Sequencing (SRP001811)
85
159
+
Pro
GGG
[SRA]
>SRA1039022
SRR035090.409402
454 Sequencing (SRP001811)
132
58
-
Pro
GGG
[SRA]
>SRA1039040
SRR035090.413387
454 Sequencing (SRP001811)
257
331
+
Pro
GGG
[SRA]
>SRA1039049
SRR035090.416555
454 Sequencing (SRP001811)
276
350
+
Pro
GGG
[SRA]
>SRA1039188
SRR035090.439311
454 Sequencing (SRP001811)
82
156
+
Pro
GGG
[SRA]
>SRA1039248
SRR035090.451216
454 Sequencing (SRP001811)
160
234
+
Pro
GGG
[SRA]
>SRA1039302
SRR035090.464229
454 Sequencing (SRP001811)
129
55
-
Pro
GGG
[SRA]
>SRA1039337
SRR035090.471031
454 Sequencing (SRP001811)
144
70
-
Pro
GGG
[SRA]
>SRA1039338
SRR035090.471254
454 Sequencing (SRP001811)
89
163
+
Pro
GGG
[SRA]
>SRA1039353
SRR035090.474742
454 Sequencing (SRP001811)
158
232
+
Pro
GGG
[SRA]
>SRA1039390
SRR035090.482829
454 Sequencing (SRP001811)
161
235
+
Pro
GGG
[SRA]
>SRA1039407
SRR035090.485660
454 Sequencing (SRP001811)
149
223
+
Pro
GGG
[SRA]
>SRA1039446
SRR035090.493762
454 Sequencing (SRP001811)
146
72
-
Pro
GGG
[SRA]
>SRA1039503
SRR035090.505502
454 Sequencing (SRP001811)
148
222
+
Pro
GGG
[SRA]
>SRA1039536
SRR035090.511115
454 Sequencing (SRP001811)
145
71
-
Pro
GGG
[SRA]
>SRA1039585
SRR035090.520464
454 Sequencing (SRP001811)
297
223
-
Pro
GGG
[SRA]
>SRA1039708
SRR035090.550840
454 Sequencing (SRP001811)
295
369
+
Pro
GGG
[SRA]
>SRA1039733
SRR035090.555838
454 Sequencing (SRP001811)
107
33
-
Pro
GGG
[SRA]
>SRA1039770
SRR035090.565480
454 Sequencing (SRP001811)
53
127
+
Pro
GGG
[SRA]
>SRA1039789
SRR035090.569564
454 Sequencing (SRP001811)
86
12
-
Pro
GGG
[SRA]
>SRA1039801
SRR035090.573240
454 Sequencing (SRP001811)
145
71
-
Pro
GGG
[SRA]
>SRA1039805
SRR035090.573963
454 Sequencing (SRP001811)
179
253
+
Pro
GGG
[SRA]
>SRA1039962
SRR035090.614902
454 Sequencing (SRP001811)
112
38
-
Pro
GGG
[SRA]
>SRA1040218
SRR035091.60840
454 Sequencing (SRP001812)
149
75
-
Pro
GGG
[SRA]
>SRA1041301
SRR035091.225364
454 Sequencing (SRP001812)
289
215
-
Pro
GGG
[SRA]
>SRA1047235
SRR035093.491100
454 Sequencing (SRP001814)
225
151
-
Pro
GGG
[SRA]
>SRA1048884
SRR035094.274434
454 Sequencing (SRP001815)
58
132
+
Pro
GGG
[SRA]
>SRA1049174
SRR035095.32498
454 Sequencing (SRP001816)
135
61
-
Pro
GGG
[SRA]
>SRA1050112
SRR035095.194884
454 Sequencing (SRP001816)
141
67
-
Pro
GGG
[SRA]
>SRA1051703
SRR035098.61332
454 Sequencing (SRP001819)
177
103
-
Pro
GGG
[SRA]
>SRA1051923
SRR035098.103855
454 Sequencing (SRP001819)
182
108
-
Pro
GGG
[SRA]
>SRA1052251
SRR035098.167881
454 Sequencing (SRP001819)
182
108
-
Pro
GGG
[SRA]
>SRA1054003
SRR035099.31181
454 Sequencing (SRP001820)
268
342
+
Pro
GGG
[SRA]
>SRA1054036
SRR035099.39261
454 Sequencing (SRP001820)
103
29
-
Pro
GGG
[SRA]
>SRA1054048
SRR035099.43552
454 Sequencing (SRP001820)
166
240
+
Pro
GGG
[SRA]
>SRA1054109
SRR035099.59181
454 Sequencing (SRP001820)
243
317
+
Pro
GGG
[SRA]
>SRA1054278
SRR035099.98600
454 Sequencing (SRP001820)
292
218
-
Pro
GGG
[SRA]
>SRA1054827
SRR035099.224168
454 Sequencing (SRP001820)
299
225
-
Pro
GGG
[SRA]
>W1610721329
LMBR01000048
Chlorobiota
Chlorobium limicola [LMBR]
3781
3855
+
Pro
GGG
[ENA]
¡û
>W1610977639
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
34182
34108
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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