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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272669 (56 seq.)
>W131169847
ARFB01000004
Bacteroidota
Segetibacter koreensis DSM 18137 [ARFB]
12804
12727
-
Pro
TGG
[ENA]
¡û
>W131237216
AUNO01000253
Bacteroidota
Chitinophaga sp. JGI 0001002-D04 [AUNO]
17825
17750
-
Pro
TGG
[ENA]
¡û
>WENV180695473
OCZS013523174
[OCZS] soil metagenome; soil
86
161
+
Pro
TGG
[ENA]
¡û
>WENV170825355
MDSY01091419
[MDSY] marine metagenome; seawater
3038
3113
+
Pro
TGG
[ENA]
¡û
>WENV170942227
MDTG01374243
[MDTG] marine metagenome; seawater
125447
125522
+
Pro
TGG
[ENA]
¡û
>WENV170981613
MWVT01147128
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
437
362
-
Pro
TGG
[ENA]
¡û
>WENV170982578
MWVU01149270
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
148
73
-
Pro
TGG
[ENA]
¡û
>WENV170984310
MWVV01231670
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
229
154
-
Pro
TGG
[ENA]
¡û
>WENV170984507
MWVV01320232
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
410
335
-
Pro
TGG
[ENA]
¡û
>WENV170985399
MWVW01089807
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
82
157
+
Pro
TGG
[ENA]
¡û
>WENV170986412
MWVX01037802
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1183
1108
-
Pro
TGG
[ENA]
¡û
>WENV170986822
MWVX01083800
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
119
42
-
Pro
TGG
[ENA]
¡û
>WENV170987085
MWVX01120942
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
222
147
-
Pro
TGG
[ENA]
¡û
>WENV170988778
MWVY01005249
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
1163
1240
+
Pro
TGG
[ENA]
¡û
>WENV170989290
MWVZ01009429
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
696
771
+
Pro
TGG
[ENA]
¡û
>WENV170992264
MWWB01010040
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
216
141
-
Pro
TGG
[ENA]
¡û
>WENV170992463
MWWB01032073
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
1177
1102
-
Pro
TGG
[ENA]
¡û
>WENV170995210
MWWE01207995
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
341
266
-
Pro
TGG
[ENA]
¡û
>WENV170996759
MWWF01403194
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
16
91
+
Pro
TGG
[ENA]
¡û
>WENV170997165
MWWG01041144
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
447
522
+
Pro
TGG
[ENA]
¡û
>WENV170997879
MWWH01082783
[MWWH] soil metagenome; MG3-2 sample; Antarctic (ecotone) soil
364
289
-
Pro
TGG
[ENA]
¡û
>WENV170998552
MWWJ01041874
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
491
414
-
Pro
TGG
[ENA]
¡û
>WENV170998962
MWWJ01183932
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
264
189
-
Pro
TGG
[ENA]
¡û
>WENV170999055
MWWJ01222408
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
228
305
+
Pro
TGG
[ENA]
¡û
>W1810586448
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2529045
2528970
-
Pro
TGG
[ENA]
¡û
>W1810586449
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2496873
2496798
-
Pro
TGG
[ENA]
¡û
>W1810858524
QTJV01000002
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
635
560
-
Pro
TGG
[ENA]
¡û
>W1810858555
QTJV01000019
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
37437
37512
+
Pro
TGG
[ENA]
¡û
>W2010104573
BJYT01000012
Bacteroidota
Segetibacter aerophilus NBRC 106135 [BJYT]
177199
177274
+
Pro
TGG
[ENA]
¡û
>W2010213315
CABHMS010000001
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
254577
254652
+
Pro
TGG
[ENA]
¡û
>W2010213373
CABHMT010000001
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
254578
254653
+
Pro
TGG
[ENA]
¡û
>W2010585543
JABAIA010000001
Bacteroidota
Chitinophaga varians Ae27 [JABAIA]
2086904
2086829
-
Pro
TGG
[ENA]
¡û
>W2010585544
JABAIA010000001
Bacteroidota
Chitinophaga varians Ae27 [JABAIA]
2061915
2061840
-
Pro
TGG
[ENA]
¡û
>W2010714052
JACHVO010000007
Bacteroidota
Chitinophaga sancti 1232 [JACHVO]
17410
17335
-
Pro
TGG
[ENA]
¡û
>W2011639965
SMSK01000006
Bacteroidota
Segetibacter sp. 3557_3 [SMSK]
111122
111197
+
Pro
TGG
[ENA]
¡û
>W2012082537
VLLG01000002
Bacteroidota
Chitinophaga japonensis DSM 13484 [VLLG]
655833
655758
-
Pro
TGG
[ENA]
¡û
>W2012156564
VUOC01000001
Bacteroidota
Chitinophaga sp. BN140078 [VUOC]
53464
53389
-
Pro
TGG
[ENA]
¡û
>W2012426516
WRXN01000006
Bacteroidota
Chitinophaga sp. ysch24 [WRXN]
111766
111842
+
Pro
TGG
[ENA]
¡û
>W2012426584
WRXO01000012
Bacteroidota
Chitinophaga oryziterrae JCM 16595 [WRXO]
215210
215134
-
Pro
TGG
[ENA]
¡û
>W2110269422
JACVFB010000002
Bacteroidota
Chitinophaga varians KACC 19415 [JACVFB]
1505523
1505598
+
Pro
TGG
[ENA]
¡û
>W2110269423
JACVFB010000002
Bacteroidota
Chitinophaga varians KACC 19415 [JACVFB]
1536213
1536288
+
Pro
TGG
[ENA]
¡û
>W2110269491
JACVFC010000001
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
3038824
3038749
-
Pro
TGG
[ENA]
¡û
>W2110269492
JACVFC010000001
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
3020691
3020616
-
Pro
TGG
[ENA]
¡û
>W2110492985
JAFEWC010000003
Bacteroidota
Segetibacter sp. SYSU D00508 [JAFEWC]
346280
346355
+
Pro
TGG
[ENA]
¡û
>W2110580027
JAGXJN010000015
Bacteroidota
Chitinophaga sp. GbtcB8 [JAGXJN]
74792
74717
-
Pro
TGG
[ENA]
¡û
>C211325001
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
5933111
5933186
+
Pro
TGG
-
¡û
>C211325002
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
5961254
5961329
+
Pro
TGG
-
¡û
>C241149282
CP051204
Bacteroidota
Chitinophaga oryzae 1303 [CP051204]
947145
947220
+
Pro
TGG
-
¡û
>C241149283
CP051204
Bacteroidota
Chitinophaga oryzae 1303 [CP051204]
968371
968446
+
Pro
TGG
-
¡û
>C241149356
CP051205
Bacteroidota
Chitinophaga oryzae 1310 [CP051205]
7317288
7317363
+
Pro
TGG
-
¡û
>C241149357
CP051205
Bacteroidota
Chitinophaga oryzae 1310 [CP051205]
7338514
7338589
+
Pro
TGG
-
¡û
>W1710544804
FOBB01000001
Bacteroidota
Chitinophaga rupis [FOBB]
446417
446340
-
Pro
TGG
[ENA]
¡û
>W1710555259
FOJF01000001
Bacteroidota
Chitinophaga sp. YR573 [FOJF]
1869182
1869105
-
Pro
TGG
[ENA]
¡û
>W1710559116
FOMK01000001
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
1458838
1458761
-
Pro
TGG
[ENA]
¡û
>W1710601094
FUWZ01000002
Bacteroidota
Chitinophaga eiseniae [FUWZ]
688886
688809
-
Pro
TGG
[ENA]
¡û
>W1710601095
FUWZ01000002
Bacteroidota
Chitinophaga eiseniae [FUWZ]
639042
638967
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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