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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272672 (39 seq.)
>W1711629952
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
4460486
4460409
-
Val
TAC
[ENA]
¡û
>WENV183092796
OLLL01000186
[OLLL] soil metagenome; soil
188964
189039
+
Val
TAC
[ENA]
¡û
>WENV170981268
MWVT01055025
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
477
554
+
Val
TAC
[ENA]
¡û
>WENV170982591
MWVU01153579
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
205
130
-
Val
TAC
[ENA]
¡û
>WENV170983518
MWVV01044522
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
279
202
-
Val
TAC
[ENA]
¡û
>WENV170985649
MWVX01000135
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
15270
15195
-
Val
TAC
[ENA]
¡û
>WENV170985818
MWVX01003724
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
809
886
+
Val
TAC
[ENA]
¡û
>WENV170987863
MWVX01296080
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
219
142
-
Val
TAC
[ENA]
¡û
>WENV170991077
MWWA01107001
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
415
338
-
Val
TAC
[ENA]
¡û
>WENV170992199
MWWB01005835
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
2610
2535
-
Val
TAC
[ENA]
¡û
>WENV170992855
MWWB01109804
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
77
154
+
Val
TAC
[ENA]
¡û
>W1910698777
MEPB01000019
Bacteroidota
Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 [MEPB]
12167
12242
+
Val
TAC
[ENA]
¡û
>W1810584247
QEYR01000059
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
119429
119354
-
Val
TAC
[ENA]
¡û
>W1810587241
QFKU01000009
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
338120
338195
+
Val
TAC
[ENA]
¡û
>W1810587341
QFKW01000025
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
119429
119354
-
Val
TAC
[ENA]
¡û
>W1810676189
QKLV01000005
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
93765
93840
+
Val
TAC
[ENA]
¡û
>W1810753623
QPCG01000008
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
184337
184262
-
Val
TAC
[ENA]
¡û
>W2010370748
CAHJXH010000281
Bacteroidota
Sphingobacteriaceae bacterium [CAHJXH]
5138
5213
+
Val
TAC
[ENA]
¡û
>W2010609339
JABMJI010000002
Bacteroidota
Mucilaginibacter sp. SG538B [JABMJI]
1434383
1434308
-
Val
TAC
[ENA]
¡û
>W2010832203
MEPB01000019
Bacteroidota
Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 [MEPB]
12167
12242
+
Val
TAC
[ENA]
¡û
>W2011392833
RCCR01000014
Bacteroidota
Mucilaginibacter sp. YR332 [RCCR]
339534
339459
-
Val
TAC
[ENA]
¡û
>W2011404815
RCWZ01000001
Bacteroidota
Mucilaginibacter kameinonensis SCK [RCWZ]
931596
931521
-
Val
TAC
[ENA]
¡û
>W2110028581
BMKD01000007
Bacteroidota
Mucilaginibacter rubeus CGMCC 1.15913 [BMKD]
112473
112548
+
Val
TAC
[ENA]
¡û
>C211297090
CP071878
Bacteroidota
Mucilaginibacter gossypii P3 [CP071878]
5220496
5220421
-
Val
TAC
-
¡û
>C211297160
CP071879
Bacteroidota
Mucilaginibacter rubeus P2 [CP071879]
569038
568963
-
Val
TAC
-
¡û
>C211297216
CP071880
Bacteroidota
Mucilaginibacter rubeus P2-4 [CP071880]
565600
565525
-
Val
TAC
-
¡û
>C211297226
CP071881
Bacteroidota
Mucilaginibacter rubeus P2-0.1 [CP071881]
1372258
1372333
+
Val
TAC
-
¡û
>C211297307
CP071882
Bacteroidota
Mucilaginibacter rubeus P2-0.5 [CP071882]
6410238
6410163
-
Val
TAC
-
¡û
>C211297819
CP071903
Bacteroidota
Mucilaginibacter rubeus P2-22.5 [CP071903]
1296472
1296547
+
Val
TAC
-
¡û
>C231345555
CP094527
Bacteroidota
Mucilaginibacter sp. SMC90 [CP094527]
7696710
7696787
+
Val
TAC
-
¡û
>C231590493
CP117167
Bacteroidota
Mucilaginibacter jinjuensis KACC 16571 [CP117167]
5680326
5680401
+
Val
TAC
-
¡û
>C231590494
CP117167
Bacteroidota
Mucilaginibacter jinjuensis KACC 16571 [CP117167]
5704807
5704882
+
Val
TAC
-
¡û
>C241079930
CP043449
Bacteroidota
Mucilaginibacter gossypii P4 [CP043449]
5869953
5870028
+
Val
TAC
-
¡û
>C241079984
CP043450
Bacteroidota
Mucilaginibacter rubeus P1 [CP043450]
6776863
6776788
-
Val
TAC
-
¡û
>C241080043
CP043451
Bacteroidota
Mucilaginibacter rubeus P2 [CP043451]
5870377
5870452
+
Val
TAC
-
¡û
>W1710505662
FMTV01000008
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
238656
238579
-
Val
TAC
[ENA]
¡û
>W1710516019
FNCG01000016
Bacteroidota
Mucilaginibacter gossypii [FNCG]
160796
160719
-
Val
TAC
[ENA]
¡û
>W1710546832
FOCL01000009
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
111216
111293
+
Val
TAC
[ENA]
¡û
>W1710577041
FPAM01000011
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
152853
152930
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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