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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272697 (34 seq.)
>W1710785072
LJHO01000001
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
732541
732616
+
Phe
GAA
[ENA]
¡û
>W1711386975
MEGC01000002
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
83412
83337
-
Phe
GAA
[ENA]
¡û
>W1711505634
MKVS01000026
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
438758
438683
-
Phe
GAA
[ENA]
¡û
>C171047044
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
3238527
3238602
+
Phe
GAA
-
¡û
>W131222132
AUBA01000007
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
58715
58790
+
Phe
GAA
[ENA]
¡û
>WENV180020278
FTCZ01000908
[FTCZ] metagenome; soil
15913
15838
-
Phe
GAA
[ENA]
¡û
>WENV180020438
FTCZ01003916
[FTCZ] metagenome; soil
18
93
+
Phe
GAA
[ENA]
¡û
>WENV180026381
FTIT01019501
[FTIT] metagenome; soil
3162
3087
-
Phe
GAA
[ENA]
¡û
>WENV180028327
FTJA01087004
[FTJA] metagenome; soil
76
1
-
Phe
GAA
[ENA]
¡û
>W141223063
BACX01000842
Alphaproteobacteria
Sphingomonas-like bacterium B12 [BACX]
637
712
+
Phe
GAA
[ENA]
¡û
>W2010534580
JAAOZC010000005
Alphaproteobacteria
Sphingomonas vulcanisoli CECT 8804 [JAAOZC]
197796
197871
+
Phe
GAA
[ENA]
¡û
>W2010559779
JAASQK010000007
Alphaproteobacteria
Sphingomonas oligoaromativorans DSM 102246 [JAASQK]
76554
76629
+
Phe
GAA
[ENA]
¡û
>W2010581600
JAAZQL010000009
Alphaproteobacteria
Novosphingobium sp. SG707 [JAAZQL]
27411
27336
-
Phe
GAA
[ENA]
¡û
>W2010585593
JABAID010000004
Alphaproteobacteria
Novosphingobium sp. ERN07 [JABAID]
99068
99143
+
Phe
GAA
[ENA]
¡û
>W2010602456
JABGCB010000001
Alphaproteobacteria
Novosphingobium sp. SG751A [JABGCB]
141479
141554
+
Phe
GAA
[ENA]
¡û
>W2010669678
JACCAM010000001
Alphaproteobacteria
Sphingomonas sp. R3G8B [JACCAM]
29469
29394
-
Phe
GAA
[ENA]
¡û
>W2010719171
JACHZI010000001
Alphaproteobacteria
Novosphingobium sp. BK256 [JACHZI]
351457
351382
-
Phe
GAA
[ENA]
¡û
>W2010719765
JACHZU010000001
Alphaproteobacteria
Novosphingobium sp. BK369 [JACHZU]
351457
351382
-
Phe
GAA
[ENA]
¡û
>W2010720014
JACHZZ010000001
Alphaproteobacteria
Novosphingobium sp. BK349 [JACHZZ]
658509
658584
+
Phe
GAA
[ENA]
¡û
>W2010720124
JACIAB010000001
Alphaproteobacteria
Novosphingobium sp. BK361 [JACIAB]
605346
605421
+
Phe
GAA
[ENA]
¡û
>W2010720521
JACIAJ010000001
Alphaproteobacteria
Novosphingobium sp. BK409 [JACIAJ]
351457
351382
-
Phe
GAA
[ENA]
¡û
>W2010721141
JACIAV010000001
Alphaproteobacteria
Novosphingobium sp. BK540 [JACIAV]
351457
351382
-
Phe
GAA
[ENA]
¡û
>W2010725176
JACIDX010000012
Alphaproteobacteria
Novosphingobium sediminicola DSM 27057 [JACIDX]
34540
34465
-
Phe
GAA
[ENA]
¡û
>W2011522168
SACO01000003
Alphaproteobacteria
Novosphingobium sp. FSY-9 [SACO]
387821
387896
+
Phe
GAA
[ENA]
¡û
>W2011652450
SNZT01000003
Alphaproteobacteria
Novosphingobium sp. GV022 [SNZT]
440889
440964
+
Phe
GAA
[ENA]
¡û
>W2011652688
SNZX01000003
Alphaproteobacteria
Novosphingobium sp. GV013 [SNZX]
652289
652364
+
Phe
GAA
[ENA]
¡û
>W2011653293
SOAI01000003
Alphaproteobacteria
Novosphingobium sp. GV002 [SOAI]
652141
652216
+
Phe
GAA
[ENA]
¡û
>W2011653377
SOAK01000003
Alphaproteobacteria
Novosphingobium sp. GV057 [SOAK]
440889
440964
+
Phe
GAA
[ENA]
¡û
>C231565282
CP115174
Alphaproteobacteria
Sphingomonas sp. PAMB00755 [CP115174]
4265135
4265210
+
Phe
GAA
-
¡û
>C231595884
CP117411
Alphaproteobacteria
Sphingomonas naphthae KACC 18716 [CP117411]
3185580
3185505
-
Phe
GAA
-
¡û
>C231596028
CP117417
Alphaproteobacteria
Novosphingobium humi KACC 19094 [CP117417]
1496897
1496822
-
Phe
GAA
-
¡û
>C231603159
CP117881
Alphaproteobacteria
Novosphingobium sp. KACC 22771 [CP117881]
2386671
2386746
+
Phe
GAA
-
¡û
>C241197767
CP103868
Alphaproteobacteria
Novosphingobium humi G5 [CP103868]
2452430
2452505
+
Phe
GAA
-
¡û
>W1610719208
LLZR01000001
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
255505
255580
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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