This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272734 (169 seq.)
>W1710858988
LMBR01000072
Chlorobiota
Chlorobium limicola [LMBR]
3637
3563
-
Met
CAT
[ENA]
¡û
>W1711167316
LVWG01000029
Chlorobiota
Pelodictyon luteolum [LVWG]
14423
14499
+
Met
CAT
[ENA]
¡û
>W1711626103
MPJE01000108
Chlorobiota
Chlorobium sp. KB01 [MPJE]
2312
2236
-
Met
CAT
[ENA]
¡û
>C006592
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
1872397
1872470
+
Met
CAT
[Ensembl]
¡û
>C016745
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
1489391
1489467
+
Met
CAT
[Ensembl]
¡û
>C018244
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1182416
1182492
+
Met
CAT
[Ensembl]
¡û
>w018045
AASE01000015
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
13555
13633
+
Met
CAT
[ENA]
¡û
>w007187
AAIK01000007
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
12008
12086
+
Met
CAT
[ENA]
¡û
>w006117
AAHJ01000025
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
3781
3703
-
Met
CAT
[ENA]
¡û
>C08003501
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
1634260
1634334
+
Met
CAT
[Ensembl]
¡û
>C08007697
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
1704656
1704732
+
Met
CAT
[Ensembl]
¡û
>WENV183812127
PYLN01000181
[PYLN] freshwater metagenome; meromictic lake
169
245
+
Met
CAT
[ENA]
¢þ
>WENV170613665
FUWD012816068
[FUWD] metagenome; unknown
43298
43222
-
Met
CAT
[ENA]
¢þ
>WENV170614042
FUWD012824120
[FUWD] metagenome; unknown
4747
4671
-
Met
CAT
[ENA]
¢þ
>WENV170620068
FUWD013025222
[FUWD] metagenome; unknown
7267
7341
+
Met
CAT
[ENA]
¢þ
>WENV170620448
FUWD013031848
[FUWD] metagenome; unknown
1137
1063
-
Met
CAT
[ENA]
¢þ
>WENV170628195
FUWD013243146
[FUWD] metagenome; unknown
7267
7341
+
Met
CAT
[ENA]
¢þ
>WENV170628591
FUWD013249344
[FUWD] metagenome; unknown
1137
1063
-
Met
CAT
[ENA]
¢þ
>W09102655
AAIB01000010
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
37935
38009
+
Met
CAT
[ENA]
¡û
>W09103335
AAJD01000001
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
179490
179566
+
Met
CAT
[ENA]
¡û
>SRA1019570
SRR035082.477647
454 Sequencing (SRP001803)
96
172
+
Met
CAT
[SRA]
>SRA1019895
SRR035083.17363
454 Sequencing (SRP001804)
489
413
-
Met
CAT
[SRA]
>SRA1020017
SRR035083.42247
454 Sequencing (SRP001804)
145
221
+
Met
CAT
[SRA]
>SRA1020135
SRR035083.61491
454 Sequencing (SRP001804)
354
430
+
Met
CAT
[SRA]
>SRA1020149
SRR035083.63761
454 Sequencing (SRP001804)
497
421
-
Met
CAT
[SRA]
>SRA1020369
SRR035083.103279
454 Sequencing (SRP001804)
148
224
+
Met
CAT
[SRA]
>SRA1020380
SRR035083.104528
454 Sequencing (SRP001804)
156
80
-
Met
CAT
[SRA]
>SRA1020438
SRR035083.115746
454 Sequencing (SRP001804)
343
267
-
Met
CAT
[SRA]
>SRA1020452
SRR035083.117832
454 Sequencing (SRP001804)
200
276
+
Met
CAT
[SRA]
>SRA1020508
SRR035083.125922
454 Sequencing (SRP001804)
35
111
+
Met
CAT
[SRA]
>SRA1020721
SRR035083.155340
454 Sequencing (SRP001804)
269
193
-
Met
CAT
[SRA]
>SRA1020785
SRR035083.164377
454 Sequencing (SRP001804)
39
115
+
Met
CAT
[SRA]
>SRA1020793
SRR035083.165807
454 Sequencing (SRP001804)
327
403
+
Met
CAT
[SRA]
>SRA1020810
SRR035083.167388
454 Sequencing (SRP001804)
271
347
+
Met
CAT
[SRA]
>SRA1020861
SRR035083.174331
454 Sequencing (SRP001804)
204
280
+
Met
CAT
[SRA]
>SRA1020864
SRR035083.174590
454 Sequencing (SRP001804)
334
258
-
Met
CAT
[SRA]
>SRA1020977
SRR035083.192433
454 Sequencing (SRP001804)
206
282
+
Met
CAT
[SRA]
>SRA1021018
SRR035083.198164
454 Sequencing (SRP001804)
11
87
+
Met
CAT
[SRA]
>SRA1021081
SRR035083.205907
454 Sequencing (SRP001804)
323
247
-
Met
CAT
[SRA]
>SRA1021086
SRR035083.206292
454 Sequencing (SRP001804)
148
72
-
Met
CAT
[SRA]
>SRA1021091
SRR035083.207098
454 Sequencing (SRP001804)
377
301
-
Met
CAT
[SRA]
>SRA1021226
SRR035083.226871
454 Sequencing (SRP001804)
228
152
-
Met
CAT
[SRA]
>SRA1021344
SRR035083.246181
454 Sequencing (SRP001804)
171
247
+
Met
CAT
[SRA]
>SRA1021520
SRR035083.268910
454 Sequencing (SRP001804)
237
161
-
Met
CAT
[SRA]
>SRA1021629
SRR035083.283654
454 Sequencing (SRP001804)
111
35
-
Met
CAT
[SRA]
>SRA1021634
SRR035083.283981
454 Sequencing (SRP001804)
17
93
+
Met
CAT
[SRA]
>SRA1021667
SRR035083.290163
454 Sequencing (SRP001804)
89
165
+
Met
CAT
[SRA]
>SRA1021757
SRR035083.303701
454 Sequencing (SRP001804)
171
247
+
Met
CAT
[SRA]
>SRA1021774
SRR035083.307125
454 Sequencing (SRP001804)
75
151
+
Met
CAT
[SRA]
>SRA1021820
SRR035083.313621
454 Sequencing (SRP001804)
204
280
+
Met
CAT
[SRA]
>SRA1021956
SRR035083.332140
454 Sequencing (SRP001804)
157
233
+
Met
CAT
[SRA]
>SRA1021976
SRR035083.334022
454 Sequencing (SRP001804)
143
219
+
Met
CAT
[SRA]
>SRA1021978
SRR035083.334105
454 Sequencing (SRP001804)
417
341
-
Met
CAT
[SRA]
>SRA1022210
SRR035083.368690
454 Sequencing (SRP001804)
281
357
+
Met
CAT
[SRA]
>SRA1022300
SRR035083.385400
454 Sequencing (SRP001804)
353
429
+
Met
CAT
[SRA]
>SRA1022331
SRR035083.391196
454 Sequencing (SRP001804)
332
256
-
Met
CAT
[SRA]
>SRA1022350
SRR035083.393626
454 Sequencing (SRP001804)
111
35
-
Met
CAT
[SRA]
>SRA1022366
SRR035083.396988
454 Sequencing (SRP001804)
186
110
-
Met
CAT
[SRA]
>SRA1022379
SRR035083.398444
454 Sequencing (SRP001804)
442
366
-
Met
CAT
[SRA]
>SRA1022388
SRR035083.399013
454 Sequencing (SRP001804)
137
61
-
Met
CAT
[SRA]
>SRA1022424
SRR035083.404026
454 Sequencing (SRP001804)
158
82
-
Met
CAT
[SRA]
>SRA1022503
SRR035083.415004
454 Sequencing (SRP001804)
111
35
-
Met
CAT
[SRA]
>SRA1022527
SRR035083.420935
454 Sequencing (SRP001804)
111
35
-
Met
CAT
[SRA]
>SRA1022578
SRR035083.427763
454 Sequencing (SRP001804)
327
403
+
Met
CAT
[SRA]
>SRA1022618
SRR035083.433608
454 Sequencing (SRP001804)
171
247
+
Met
CAT
[SRA]
>SRA1022628
SRR035083.434893
454 Sequencing (SRP001804)
332
256
-
Met
CAT
[SRA]
>SRA1022631
SRR035083.435168
454 Sequencing (SRP001804)
95
171
+
Met
CAT
[SRA]
>SRA1022638
SRR035083.436169
454 Sequencing (SRP001804)
324
400
+
Met
CAT
[SRA]
>SRA1022719
SRR035083.447063
454 Sequencing (SRP001804)
171
247
+
Met
CAT
[SRA]
>SRA1022746
SRR035083.452797
454 Sequencing (SRP001804)
55
131
+
Met
CAT
[SRA]
>SRA1022750
SRR035083.453626
454 Sequencing (SRP001804)
269
193
-
Met
CAT
[SRA]
>SRA1022775
SRR035083.459045
454 Sequencing (SRP001804)
265
189
-
Met
CAT
[SRA]
>SRA1022808
SRR035083.464497
454 Sequencing (SRP001804)
6
82
+
Met
CAT
[SRA]
>SRA1022901
SRR035083.482457
454 Sequencing (SRP001804)
373
449
+
Met
CAT
[SRA]
>SRA1023023
SRR035083.507057
454 Sequencing (SRP001804)
186
110
-
Met
CAT
[SRA]
>SRA1023043
SRR035083.511702
454 Sequencing (SRP001804)
339
415
+
Met
CAT
[SRA]
>SRA1023055
SRR035083.512757
454 Sequencing (SRP001804)
162
238
+
Met
CAT
[SRA]
>SRA1023096
SRR035083.519587
454 Sequencing (SRP001804)
63
139
+
Met
CAT
[SRA]
>SRA1029765
SRR035087.177920
454 Sequencing (SRP001808)
245
321
+
Met
CAT
[SRA]
>SRA1030639
SRR035087.308359
454 Sequencing (SRP001808)
57
133
+
Met
CAT
[SRA]
>SRA1032581
SRR035088.53787
454 Sequencing (SRP001809)
148
72
-
Met
CAT
[SRA]
>SRA1032746
SRR035088.93400
454 Sequencing (SRP001809)
333
409
+
Met
CAT
[SRA]
>SRA1033281
SRR035088.213415
454 Sequencing (SRP001809)
50
126
+
Met
CAT
[SRA]
>SRA1033460
SRR035088.263752
454 Sequencing (SRP001809)
291
215
-
Met
CAT
[SRA]
>SRA1033823
SRR035088.366605
454 Sequencing (SRP001809)
284
360
+
Met
CAT
[SRA]
>SRA1035402
SRR035089.298918
454 Sequencing (SRP001810)
40
116
+
Met
CAT
[SRA]
>SRA1035694
SRR035089.356123
454 Sequencing (SRP001810)
208
132
-
Met
CAT
[SRA]
>SRA1036806
SRR035090.11567
454 Sequencing (SRP001811)
8
84
+
Met
CAT
[SRA]
>SRA1036932
SRR035090.40669
454 Sequencing (SRP001811)
35
111
+
Met
CAT
[SRA]
>SRA1036990
SRR035090.53621
454 Sequencing (SRP001811)
172
96
-
Met
CAT
[SRA]
>SRA1037012
SRR035090.58841
454 Sequencing (SRP001811)
88
164
+
Met
CAT
[SRA]
>SRA1037032
SRR035090.61985
454 Sequencing (SRP001811)
173
97
-
Met
CAT
[SRA]
>SRA1037070
SRR035090.69528
454 Sequencing (SRP001811)
228
152
-
Met
CAT
[SRA]
>SRA1037091
SRR035090.72392
454 Sequencing (SRP001811)
274
198
-
Met
CAT
[SRA]
>SRA1037126
SRR035090.78196
454 Sequencing (SRP001811)
172
96
-
Met
CAT
[SRA]
>SRA1037252
SRR035090.102365
454 Sequencing (SRP001811)
228
152
-
Met
CAT
[SRA]
>SRA1037283
SRR035090.106895
454 Sequencing (SRP001811)
228
152
-
Met
CAT
[SRA]
>SRA1037345
SRR035090.119970
454 Sequencing (SRP001811)
172
96
-
Met
CAT
[SRA]
>SRA1037430
SRR035090.134661
454 Sequencing (SRP001811)
230
154
-
Met
CAT
[SRA]
>SRA1037484
SRR035090.140937
454 Sequencing (SRP001811)
17
93
+
Met
CAT
[SRA]
>SRA1037514
SRR035090.144959
454 Sequencing (SRP001811)
99
23
-
Met
CAT
[SRA]
>SRA1037794
SRR035090.197545
454 Sequencing (SRP001811)
464
388
-
Met
CAT
[SRA]
>SRA1037800
SRR035090.198756
454 Sequencing (SRP001811)
165
241
+
Met
CAT
[SRA]
>SRA1037823
SRR035090.201687
454 Sequencing (SRP001811)
117
41
-
Met
CAT
[SRA]
>SRA1037835
SRR035090.203069
454 Sequencing (SRP001811)
64
140
+
Met
CAT
[SRA]
>SRA1037864
SRR035090.207810
454 Sequencing (SRP001811)
310
234
-
Met
CAT
[SRA]
>SRA1037900
SRR035090.216025
454 Sequencing (SRP001811)
229
153
-
Met
CAT
[SRA]
>SRA1037918
SRR035090.218523
454 Sequencing (SRP001811)
212
136
-
Met
CAT
[SRA]
>SRA1037931
SRR035090.220785
454 Sequencing (SRP001811)
29
105
+
Met
CAT
[SRA]
>SRA1037952
SRR035090.226155
454 Sequencing (SRP001811)
45
121
+
Met
CAT
[SRA]
>SRA1037959
SRR035090.226606
454 Sequencing (SRP001811)
110
34
-
Met
CAT
[SRA]
>SRA1037965
SRR035090.227109
454 Sequencing (SRP001811)
228
152
-
Met
CAT
[SRA]
>SRA1038036
SRR035090.236199
454 Sequencing (SRP001811)
29
105
+
Met
CAT
[SRA]
>SRA1038045
SRR035090.238766
454 Sequencing (SRP001811)
110
186
+
Met
CAT
[SRA]
>SRA1038071
SRR035090.242060
454 Sequencing (SRP001811)
229
153
-
Met
CAT
[SRA]
>SRA1038145
SRR035090.253753
454 Sequencing (SRP001811)
442
366
-
Met
CAT
[SRA]
>SRA1038182
SRR035090.260027
454 Sequencing (SRP001811)
228
152
-
Met
CAT
[SRA]
>SRA1038276
SRR035090.278460
454 Sequencing (SRP001811)
327
251
-
Met
CAT
[SRA]
>SRA1038336
SRR035090.289278
454 Sequencing (SRP001811)
362
438
+
Met
CAT
[SRA]
>SRA1038343
SRR035090.289927
454 Sequencing (SRP001811)
165
241
+
Met
CAT
[SRA]
>SRA1038392
SRR035090.296626
454 Sequencing (SRP001811)
347
423
+
Met
CAT
[SRA]
>SRA1038434
SRR035090.304645
454 Sequencing (SRP001811)
353
429
+
Met
CAT
[SRA]
>SRA1038438
SRR035090.305111
454 Sequencing (SRP001811)
310
234
-
Met
CAT
[SRA]
>SRA1038449
SRR035090.306962
454 Sequencing (SRP001811)
21
97
+
Met
CAT
[SRA]
>SRA1038485
SRR035090.313928
454 Sequencing (SRP001811)
38
114
+
Met
CAT
[SRA]
>SRA1038735
SRR035090.356813
454 Sequencing (SRP001811)
439
363
-
Met
CAT
[SRA]
>SRA1038739
SRR035090.357552
454 Sequencing (SRP001811)
166
242
+
Met
CAT
[SRA]
>SRA1038778
SRR035090.364158
454 Sequencing (SRP001811)
386
310
-
Met
CAT
[SRA]
>SRA1038797
SRR035090.367677
454 Sequencing (SRP001811)
22
98
+
Met
CAT
[SRA]
>SRA1038863
SRR035090.382779
454 Sequencing (SRP001811)
166
242
+
Met
CAT
[SRA]
>SRA1039081
SRR035090.421046
454 Sequencing (SRP001811)
82
158
+
Met
CAT
[SRA]
>SRA1039083
SRR035090.421427
454 Sequencing (SRP001811)
166
242
+
Met
CAT
[SRA]
>SRA1039098
SRR035090.424474
454 Sequencing (SRP001811)
38
114
+
Met
CAT
[SRA]
>SRA1039103
SRR035090.425896
454 Sequencing (SRP001811)
106
182
+
Met
CAT
[SRA]
>SRA1039109
SRR035090.427029
454 Sequencing (SRP001811)
38
114
+
Met
CAT
[SRA]
>SRA1039157
SRR035090.433793
454 Sequencing (SRP001811)
221
145
-
Met
CAT
[SRA]
>SRA1039163
SRR035090.435380
454 Sequencing (SRP001811)
446
370
-
Met
CAT
[SRA]
>SRA1039183
SRR035090.438370
454 Sequencing (SRP001811)
191
267
+
Met
CAT
[SRA]
>SRA1039224
SRR035090.446856
454 Sequencing (SRP001811)
230
154
-
Met
CAT
[SRA]
>SRA1039230
SRR035090.447861
454 Sequencing (SRP001811)
213
289
+
Met
CAT
[SRA]
>SRA1039235
SRR035090.448362
454 Sequencing (SRP001811)
166
242
+
Met
CAT
[SRA]
>SRA1039259
SRR035090.453555
454 Sequencing (SRP001811)
166
242
+
Met
CAT
[SRA]
>SRA1039274
SRR035090.455627
454 Sequencing (SRP001811)
166
242
+
Met
CAT
[SRA]
>SRA1039420
SRR035090.487701
454 Sequencing (SRP001811)
138
214
+
Met
CAT
[SRA]
>SRA1039598
SRR035090.525272
454 Sequencing (SRP001811)
257
181
-
Met
CAT
[SRA]
>SRA1039612
SRR035090.529430
454 Sequencing (SRP001811)
107
183
+
Met
CAT
[SRA]
>SRA1039641
SRR035090.535115
454 Sequencing (SRP001811)
277
353
+
Met
CAT
[SRA]
>SRA1039735
SRR035090.556140
454 Sequencing (SRP001811)
186
262
+
Met
CAT
[SRA]
>SRA1039757
SRR035090.561059
454 Sequencing (SRP001811)
361
437
+
Met
CAT
[SRA]
>SRA1039808
SRR035090.574738
454 Sequencing (SRP001811)
158
82
-
Met
CAT
[SRA]
>SRA1039818
SRR035090.576609
454 Sequencing (SRP001811)
271
347
+
Met
CAT
[SRA]
>SRA1039832
SRR035090.579683
454 Sequencing (SRP001811)
38
114
+
Met
CAT
[SRA]
>SRA1039880
SRR035090.590435
454 Sequencing (SRP001811)
237
161
-
Met
CAT
[SRA]
>SRA1039931
SRR035090.606211
454 Sequencing (SRP001811)
30
106
+
Met
CAT
[SRA]
>SRA1040691
SRR035091.133956
454 Sequencing (SRP001812)
283
359
+
Met
CAT
[SRA]
>SRA1041893
SRR035091.311571
454 Sequencing (SRP001812)
262
338
+
Met
CAT
[SRA]
>SRA1042735
SRR035091.437925
454 Sequencing (SRP001812)
41
117
+
Met
CAT
[SRA]
>SRA1045809
SRR035093.173783
454 Sequencing (SRP001814)
401
325
-
Met
CAT
[SRA]
>SRA1047518
SRR035093.564664
454 Sequencing (SRP001814)
217
141
-
Met
CAT
[SRA]
>SRA1047564
SRR035093.580943
454 Sequencing (SRP001814)
42
118
+
Met
CAT
[SRA]
>SRA1052816
SRR035098.281277
454 Sequencing (SRP001819)
162
86
-
Met
CAT
[SRA]
>SRA1053321
SRR035098.382486
454 Sequencing (SRP001819)
246
322
+
Met
CAT
[SRA]
>SRA1054231
SRR035099.89155
454 Sequencing (SRP001820)
299
375
+
Met
CAT
[SRA]
>SRA1054327
SRR035099.107773
454 Sequencing (SRP001820)
303
379
+
Met
CAT
[SRA]
>SRA1054388
SRR035099.120914
454 Sequencing (SRP001820)
398
322
-
Met
CAT
[SRA]
>SRA1054392
SRR035099.122921
454 Sequencing (SRP001820)
85
9
-
Met
CAT
[SRA]
>SRA1054552
SRR035099.160760
454 Sequencing (SRP001820)
311
387
+
Met
CAT
[SRA]
>W1610721334
LMBR01000072
Chlorobiota
Chlorobium limicola [LMBR]
3637
3563
-
Met
CAT
[ENA]
¡û
>W1610977647
LVWG01000029
Chlorobiota
Pelodictyon luteolum [LVWG]
14423
14499
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK